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Structural basis of signaling complex inhibition by IL-6 domain-swapped dimers Structure (IF 4.4) Pub Date : 2024-11-19 Anna Yudenko, Sergey Bukhdruker, Pavel Shishkin, Sergey Rodin, Anastasia Burtseva, Aleksandr Petrov, Natalia Pigareva, Alexey Sokolov, Egor Zinovev, Igor Eliseev, Alina Remeeva, Egor Marin, Alexey Mishin, Valentin Gordeliy, Ivan Gushchin, Aleksandr Ischenko, Valentin Borshchevskiy
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The ALS drug riluzole binds to the C-terminal domain of SARS-CoV-2 nucleocapsid protein and has antiviral activity Structure (IF 4.4) Pub Date : 2024-11-13 María Ángeles Márquez-Moñino, Clara M. Santiveri, Patricia de León, Sergio Camero, Ramón Campos-Olivas, M. Ángeles Jiménez, Margarita Sáiz, Beatriz González, José Manuel Pérez-Cañadillas
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Deciphering the molecular mechanism underlying morphology transition in two-component DNA-protein cophase separation Structure (IF 4.4) Pub Date : 2024-11-13 Cheng Li, Yunqiang Bian, Yiting Tang, Lingyu Meng, Peipei Yin, Ye Hong, Jun Cheng, Yuchen Li, Jie Lin, Chao Tang, Chunlai Chen, Wenfei Li, Zhi Qi
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Structural and biochemical insights into the mechanism of the anti-CRISPR protein AcrIE3 Structure (IF 4.4) Pub Date : 2024-11-13 Jasung Koo, Gyujin Lee, Changkon Park, Hyejin Oh, Sung-Hyun Hong, Jeong-Yong Suh, Euiyoung Bae
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Mechanism of negative μ-opioid receptor modulation by sodium ions Structure (IF 4.4) Pub Date : 2024-11-12 Neil J. Thomson, Ulrich Zachariae
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Visualizing the dual interaction of calcineurin with PI4KA and FAM126A Structure (IF 4.4) Pub Date : 2024-11-07 Qingtong Zhou, Xiao Liu, Ming-Wei Wang
In this issue of Structure, Shaw et al.1 visualize the PI4KA-TTC7B-FAM126A-calcineurin complex by combining cryo-EM, HDX-MS, and AlphaFold3, and reveal a dual interaction of calcineurin with PI4KA and FAM126A. This work promotes our understanding of calcineurin-regulated PI4KA activity and paves the way for further exploration of the roles of PI4KA in the plasma membrane.
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Targeting adhesion G protein-coupled receptors. Current status and future perspectives Structure (IF 4.4) Pub Date : 2024-11-08 Fabian Liessmann, Lukas von Bredow, Jens Meiler, Ines Liebscher
G protein-coupled receptors (GPCRs) orchestrate many physiological functions and are a crucial target in drug discovery. Adhesion GPCRs (aGPCRs), the second largest family within this superfamily, are promising yet underexplored targets for treating various diseases, including obesity, psychiatric disorders, and cancer. However, the receptors’ unique and complex structure and miscellaneous interactions
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Structure, function, surf, repeat: A week at Lorne Proteins 2024 Structure (IF 4.4) Pub Date : 2024-11-07 Rosemary J. Cater, Renae M. Ryan, Jonathan S. Oakhill, Peter Czabotar, James M. Murphy, Melissa J. Call
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Multi-step shapeshifting of SARS-CoV-2 Omicron spikes during fusion Structure (IF 4.4) Pub Date : 2024-11-07 Wang Xu, Yang Han, Maolin Lu
In this issue of Structure, Dey et al.1 employ single-molecule FRET to map the conformational trajectory of Omicron spikes during fusion, revealing a transition from pre-fusion to post-fusion through two intermediates. This study highlights the roles of acidic environments, Ca2+, and receptors in promoting SARS-CoV-2 cell entry.
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Traces of convergent evolution left in the structure of EgtB-IV Structure (IF 4.4) Pub Date : 2024-11-07 Taku Mizutani, Ikuro Abe
The enzymatically regioselective catalyzed incorporation of cysteine sulfoxide into histidine generates physiologically important antioxidants such as ergothioneine and ovothiol. In this issue of Structure, Ireland et al.1 report the crystal structure of EgtB-IV, which provides insights into the convergent evolution of sulfoxide synthase.
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Ringing the changes: Regulation of Parkin activity by different ubiquitin and ubiquitin-like proteins Structure (IF 4.4) Pub Date : 2024-11-07 Shalini Iyer, Chittaranjan Das
Phosphorylation of ubiquitin and the ubiquitin-like domain of Parkin, mediated by the kinase PINK1, is essential for the liberation of the E3 ligase from its autoinhibited state. In this issue of Structure, Lenka et al.1 provide the structural basis for the specificity and stronger Parkin activation by phospho-NEDD8 compared to phospho-ubiquitin.
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IspE kinase as an anti-infective target: Role of a hydrophobic pocket in inhibitor binding Structure (IF 4.4) Pub Date : 2024-11-06 Rawia Hamid, Danica J. Walsh, Eleonora Diamanti, Diana Aguilar, Antoine Lacour, Mostafa M. Hamed, Anna K.H. Hirsch
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AI-driven mechanistic analysis of conformational dynamics in CNNM/CorC Mg2+ transporters Structure (IF 4.4) Pub Date : 2024-11-06 Jie Ma, Xingyu Song, Yosuke Funato, Xinyu Teng, Yichen Huang, Hiroaki Miki, Wenning Wang, Motoyuki Hattori
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Two cooperative lipid binding sites within the pleckstrin homology domain are necessary for AKT binding and stabilization to the plasma membrane Structure (IF 4.4) Pub Date : 2024-11-05 Chrysa Soteriou, Mengfan Xu, Simon D. Connell, Arwen I.I. Tyler, Antreas C. Kalli, James L. Thorne
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Archaeal NusA2 is the ancestor of ribosomal protein eS7 in eukaryotes Structure (IF 4.4) Pub Date : 2024-11-05 Duy Khanh Phung, Simona Pilotto, Dorota Matelska, Fabian Blombach, Nikos Pinotsis, Ladislav Hovan, Francesco Luigi Gervasio, Finn Werner
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LEDGF interacts with the NID domain of MeCP2 and modulates MeCP2 condensates Structure (IF 4.4) Pub Date : 2024-11-04 Saskia Lesire, Rodrigo Lata, Yannick Hoogvliets, Kune Herrebosch, Paulien Van De Velde, Anouk Speleers, Frauke Christ, Siska Van Belle, Zeger Debyser
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Structure-function analyses of human TRPV6 ancestral and derived haplotypes Structure (IF 4.4) Pub Date : 2024-11-04 Arthur Neuberger, Alexey Shalygin, Yury A. Trofimov, Irina I. Veretenenko, Kirill D. Nadezhdin, Nikolay A. Krylov, Thomas Gudermann, Roman G. Efremov, Vladimir Chubanov, Alexander I. Sobolevsky
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Crystal structure of the alternative complex III from the phototrophic bacterium Chloroflexus aurantiacus Structure (IF 4.4) Pub Date : 2024-11-04 Wenping Wu, Han Fang, Huimin He, Jingyi Wu, Zijun Gong, Chunyang Li, Xinkai Pei, Xiaoling Xu
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High-resolution cryo-EM analysis of a Streptococcus pyogenes M-protein/human plasminogen complex Structure (IF 4.4) Pub Date : 2024-11-04 Bradley M. Readnour, Sheiny Tjia-Fleck, Nathan R. McCann, Yetunde A. Ayinuola, Francis J. Castellino
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Structural and functional studies of the EGF20-27 region reveal new features of the human Notch receptor important for optimal activation Structure (IF 4.4) Pub Date : 2024-11-01 Zhihan Bo, Thomas Rowntree, Steven Johnson, Hilman Nurmahdi, Richard J. Suckling, Johan Hill, Boguslawa Korona, Philip C. Weisshuhn, Devon Sheppard, Yao Meng, Shaoyan Liang, Edward D. Lowe, Susan M. Lea, Christina Redfield, Penny A. Handford
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GeoNet enables the accurate prediction of protein-ligand binding sites through interpretable geometric deep learning Structure (IF 4.4) Pub Date : 2024-11-01 Jiyun Han, Shizhuo Zhang, Mingming Guan, Qiuyu Li, Xin Gao, Juntao Liu
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Tau seeds catalyze fibril-type structures from GFP tau biosensor cells Structure (IF 4.4) Pub Date : 2024-11-01 Jinliang Wang, Christopher K. Williams, Michael A. DeTure, Shino D. Magaki, Dennis W. Dickson, Harry V. Vinters, Paul M. Seidler
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Conformational dynamics of SARS-CoV-2 Omicron spike trimers during fusion activation at single molecule resolution Structure (IF 4.4) Pub Date : 2024-10-30 Shuvankar Dey, Purba Pahari, Srija Mukherjee, James B. Munro, Dibyendu Kumar Das
(Structure 32, 1–16; November 7, 2024)
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T6SS-associated Rhs toxin-encapsulating shells: Structural and bioinformatical insights into bacterial weaponry and self-protection Structure (IF 4.4) Pub Date : 2024-10-30 Claudia S. Kielkopf, Mikhail M. Shneider, Petr G. Leiman, Nicholas M.I. Taylor
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Native mass spectrometry prescreening of G protein-coupled receptor complexes for cryo-EM structure determination Structure (IF 4.4) Pub Date : 2024-10-28 Donggyun Kim, Weijing Liu, Rosa Viner, Vadim Cherezov
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Three-dimensional structures of Vibrio cholerae typing podophage VP1 in two states Structure (IF 4.4) Pub Date : 2024-10-28 Hao Pang, Fenxia Fan, Jing Zheng, Hao Xiao, Zhixue Tan, Jingdong Song, Biao Kan, Hongrong Liu
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Structural insight into rabies virus neutralization revealed by an engineered antibody scaffold Structure (IF 4.4) Pub Date : 2024-10-28 Ashwini Kedari, Rommel Iheozor-Ejiofor, Petja Salminen, Hasan Uğurlu, Anna R. Mäkelä, Lev Levanov, Olli Vapalahti, Vesa P. Hytönen, Kalle Saksela, Ilona Rissanen
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Structural requirements for the specific binding of CRABP2 to cyclin D3 Structure (IF 4.4) Pub Date : 2024-10-26 Martyna W. Pastok, Charles W.E. Tomlinson, Shannon Turberville, Abbey M. Butler, Arnaud Baslé, Martin E.M. Noble, Jane A. Endicott, Ehmke Pohl, Natalie J. Tatum
(Structure 32, 1–15; December 5, 2024)
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ANTIPASTI: Interpretable prediction of antibody binding affinity exploiting normal modes and deep learning Structure (IF 4.4) Pub Date : 2024-10-25 Kevin Michalewicz, Mauricio Barahona, Barbara Bravi
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Exploiting cryo-EM structures of actomyosin-5a to reveal the physical properties of its lever Structure (IF 4.4) Pub Date : 2024-10-24 Molly S.C. Gravett, David P. Klebl, Oliver G. Harlen, Daniel J. Read, Stephen P. Muench, Sarah A. Harris, Michelle Peckham
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The mechanism of allosteric activation of SYK kinase derived from multiple phospho-ITAM-bound structures Structure (IF 4.4) Pub Date : 2024-10-22 William J. Bradshaw, Gemma Harris, Opher Gileadi, Vittorio L. Katis
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Insights into the distinct membrane targeting mechanisms of WDR91 family proteins Structure (IF 4.4) Pub Date : 2024-10-18 Xinli Ma, Jian Li, Nan Liu, Surajit Banerjee, Xiaotong Hu, Xiaoyu Wang, Jianshu Dong, Kangdong Liu, Chonglin Yang, Zigang Dong
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Structural insights into the DNA-binding mechanism of BCL11A: The integral role of ZnF6 Structure (IF 4.4) Pub Date : 2024-10-17 Thibault Viennet, Maolu Yin, Abhilash Jayaraj, Woojin Kim, Zhen-Yu J. Sun, Yuko Fujiwara, Kevin Zhang, Davide Seruggia, Hyuk-Soo Seo, Sirano Dhe-Paganon, Stuart H. Orkin, Haribabu Arthanari
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ATTRv-V30M amyloid fibrils from heart and nerves exhibit structural homogeneity Structure (IF 4.4) Pub Date : 2024-10-17 Binh An Nguyen, Shumaila Afrin, Anna Yakubovska, Virender Singh, Rose Pedretti, Parker Bassett, Maja Pekala, Jaime Vaquer Alicea, Peter Kunach, Lanie Wang, Andrew Lemoff, Barbara Kluve-Beckerman, Lorena Saelices
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Ribosome-inactivation by a class of widely distributed C-tail anchored membrane proteins Structure (IF 4.4) Pub Date : 2024-10-16 Robert Karari Njenga, Julian Boele, Friedel Drepper, Kasturica Sinha, Eirini Marouda, Pitter F. Huesgen, Crysten Blaby-Haas, Hans-Georg Koch
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Structural requirements for the specific binding of CRABP2 to cyclin D3 Structure (IF 4.4) Pub Date : 2024-10-16 Martyna W. Pastok, Charles W.E. Tomlinson, Shannon Turberville, Abbey M. Butler, Arnaud Baslé, Martin E.M. Noble, Jane A. Endicott, Ehmke Pohl, Natalie J. Tatum
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PARG inhibition induces nuclear aggregation of PARylated PARP1 Structure (IF 4.4) Pub Date : 2024-10-14 Sateja Paradkar, Julia Purcell, Annie Cui, Sam Friedman, Katelyn J. Noronha, Matthew A. Murray, Ranjini K. Sundaram, Ranjit S. Bindra, Ryan B. Jensen
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Structural basis for the ligand promiscuity of the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes Structure (IF 4.4) Pub Date : 2024-10-11 Jorge Fernandez-Perez, Akinobu Senoo, Jose M.M. Caaveiro, Makoto Nakakido, Susana de Vega, Ichiro Nakagawa, Kouhei Tsumoto
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Structural dissection of the CMP-pseudaminic acid synthetase, PseF Structure (IF 4.4) Pub Date : 2024-10-10 Tessa Keenan, Andrew R. Cowan, Emily K.P. Flack, Natasha E. Hatton, Abigail J. Walklett, Gavin H. Thomas, Glyn R. Hemsworth, Martin A. Fascione
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PROTAC-mediated activation, rather than degradation, of a nuclear receptor reveals complex ligand-receptor interaction network Structure (IF 4.4) Pub Date : 2024-10-09 Andrew D. Huber, Wenwei Lin, Shyaron Poudel, Darcie J. Miller, Taosheng Chen
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Cryo-EM structures of Clostridium perfringens enterotoxin bound to its human receptor, claudin-4 Structure (IF 4.4) Pub Date : 2024-10-08 Sewwandi S. Rathnayake, Satchal K. Erramilli, Anthony A. Kossiakoff, Alex J. Vecchio
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Structural mechanism of HP1⍺-dependent transcriptional repression and chromatin compaction Structure (IF 4.4) Pub Date : 2024-10-08 Vladyslava Sokolova, Jacob Miratsky, Vladimir Svetlov, Michael Brenowitz, John Vant, Tyler S. Lewis, Kelly Dryden, Gahyun Lee, Shayan Sarkar, Evgeny Nudler, Abhishek Singharoy, Dongyan Tan
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Structural basis of selective beta-carotene binding by a soluble protein Structure (IF 4.4) Pub Date : 2024-10-08 Nikita A. Egorkin, Eva E. Dominnik, Roman I. Raevskii, Daria D. Kuklina, Larisa A. Varfolomeeva, Vladimir O. Popov, Konstantin M. Boyko, Nikolai N. Sluchanko
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Structural biology of the human papillomavirus Structure (IF 4.4) Pub Date : 2024-10-04 Feng Han, Xin-ying Guo, Ming-xia Jiang, Ning-shao Xia, Ying Gu, Shao-wei Li
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Mechanism of phospho-Ubls’ specificity and conformational changes that regulate Parkin activity Structure (IF 4.4) Pub Date : 2024-10-04 Dipti Ranjan Lenka, Shradha Chaurasiya, Loknath Ratnakar, Atul Kumar
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Predicting protein interactions of the kinase Lck critical to T cell modulation Structure (IF 4.4) Pub Date : 2024-10-04 Mu Gao, Jeffrey Skolnick
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First contact(in): The complete structure of contactin 2 Structure (IF 4.4) Pub Date : 2024-10-03 Lucas M.P. Chataigner, Bert J.C. Janssen
In this issue of Structure, Fan et al.1 report the structure of the full contactin 2 ectodomain, representing the first for the contactin family. The work reveals six immunoglobulin domains are essential for intercellular interactions, explores differences in proposed contactin 2 homodimerization mechanisms, and provides an updated model for contactin 2 organization on and between cells.
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Aberrant tau condensates as catalytic microcompartments propel tau fibrillation Structure (IF 4.4) Pub Date : 2024-10-03 Agustín Mangiarotti, Asima Nayak, Dragomir Milovanovic
In this issue of Structure, Soeda et al.1 employed optogenetic tools and demonstrate that an N-terminal truncation of tau and microtubule-binding deficiency lead to the formation of tau condensates, accelerating its fibrillation.
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One RING to rule them all: Mind bomb-1 ccRING3 controls Notch signaling Structure (IF 4.4) Pub Date : 2024-10-03 Kristen M. Ramsey, Doug Barrick
In this issue of Structure, Cao et al.1 use X-ray crystallography, biochemical, and genetic studies to define the key role of the Mind bomb-1 ccRING3 domain in triggering Notch signaling, and they demonstrate that ccRING3-mediated dimerization is a key step in ligand activation.
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Ubiquitous ubiquitin: From bacteria to eukaryotes Structure (IF 4.4) Pub Date : 2024-10-03 Mohit Misra, Ivan Ðikić
In a recent issue of Nature, Chambers et al.1 combined bioinformatics, biochemistry, and X-ray crystallography to uncover the presence of a ubiquitin-like machinery in bacteria, which was believed to be unique to archaea and eukaryotes. This study highlights the prevalence of a ubiquitin-like system in bacteria that was later adopted by the eukaryotes for various purposes such as protein degradation
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Conformational dynamics of SARS-CoV-2 Omicron spike trimers during fusion activation at single molecule resolution Structure (IF 4.4) Pub Date : 2024-10-03 Shuvankar Dey, Purba Pahari, Srija Mukherjee, James B. Munro, Dibyendu Kumar Das
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Probing hot spots of protein-protein interactions mediated by the safety-belt region of REV7 Structure (IF 4.4) Pub Date : 2024-10-03 Radha Charan Dash, Gianluca A. Arianna, Seema M. Patel, Alessandro A. Rizzo, Noah J. Harrahill, Dmitry M. Korzhnev, M. Kyle Hadden
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The variable structural flexibility of the Bacillus circulans β-galactosidase isoforms determines their unique functionalities Structure (IF 4.4) Pub Date : 2024-09-30 Michaela Hovorková, Barbora Kaščáková, Lucie Petrásková, Petra Havlíčková, Jiří Nováček, Daniel Pinkas, Zdenko Gardian, Vladimír Křen, Pavla Bojarová, Ivana Kutá Smatanová
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Assessing AF2’s ability to predict structural ensembles of proteins Structure (IF 4.4) Pub Date : 2024-09-26 Jakob R. Riccabona, Fabian C. Spoendlin, Anna-Lena M. Fischer, Johannes R. Loeffler, Patrick K. Quoika, Timothy P. Jenkins, James A. Ferguson, Eva Smorodina, Andreas H. Laustsen, Victor Greiff, Stefano Forli, Andrew B. Ward, Charlotte M. Deane, Monica L. Fernández-Quintero
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Discovery and characterization of a pan-betacoronavirus S2-binding antibody Structure (IF 4.4) Pub Date : 2024-09-25 Nicole V. Johnson, Steven C. Wall, Kevin J. Kramer, Clinton M. Holt, Sivakumar Periasamy, Simone I. Richardson, Nelia P. Manamela, Naveenchandra Suryadevara, Emanuele Andreano, Ida Paciello, Giulio Pierleoni, Giulia Piccini, Ying Huang, Pan Ge, James D. Allen, Naoko Uno, Andrea R. Shiakolas, Kelsey A. Pilewski, Rachel S. Nargi, Rachel E. Sutton, Alexandria A. Abu-Shmais, Robert Parks, Barton F. Haynes
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Advances in the field of RNA 3D structure prediction and modeling, with purely theoretical approaches, and with the use of experimental data Structure (IF 4.4) Pub Date : 2024-09-24 Sunandan Mukherjee, S. Naeim Moafinejad, Nagendar Goud Badepally, Katarzyna Merdas, Janusz M. Bujnicki
Recent advancements in RNA three-dimensional (3D) structure prediction have provided significant insights into RNA biology, highlighting the essential role of RNA in cellular functions and its therapeutic potential. This review summarizes the latest developments in computational methods, particularly the incorporation of artificial intelligence and machine learning, which have improved the efficiency
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Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors Structure (IF 4.4) Pub Date : 2024-09-24 Yasuomi Miyashita, Toshio Moriya, Takafumi Kato, Masato Kawasaki, Satoshi Yasuda, Naruhiko Adachi, Kano Suzuki, Satoshi Ogasawara, Tetsuichiro Saito, Toshiya Senda, Takeshi Murata
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An AI-informed NMR structure reveals an extraordinary LETM1 F-EF-hand domain that functions as a two-way regulator of mitochondrial calcium Structure (IF 4.4) Pub Date : 2024-09-23 Qi-Tong Lin, Danielle M. Colussi, Taylor Lake, Peter B. Stathopulos
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Molecular basis of proteolytic cleavage regulation by the extracellular matrix receptor dystroglycan Structure (IF 4.4) Pub Date : 2024-09-20 Michael J.M. Anderson, Amanda N. Hayward, Adam T. Smiley, Ke Shi, Matthew R. Pawlak, Eric J. Aird, Eva Grant, Lauren Greenberg, Hideki Aihara, Robert L. Evans III, Christopher Ulens, Wendy R. Gordon
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The human touch: Utilizing AlphaFold 3 to analyze structures of endogenous metabolons Structure (IF 4.4) Pub Date : 2024-09-19 Toni K. Träger, Christian Tüting, Panagiotis L. Kastritis