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Efficient Multiplex Genome Editing of the Cyanobacterium Synechocystis sp. PCC6803 via CRISPR-Cas12a Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-19 Wei Du, Luna L. Meister, Tobias van Grinsven, Filipe Branco dos Santos
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Functional Expression and Construction of a Self-Sufficient Cytochrome P450 Chimera for Efficient Steroidal C14α Hydroxylation in Escherichia coli Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-19 Xia Ke, Hong-Duo Dong, Xi-Man Zhao, Xin-Xin Wang, Zhi-Qiang Liu, Yu-Guo Zheng
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Advancing breast cancer risk stratification using multimodal AI Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-20
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FAS-less allogeneic CAR T cells Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-20 Keith P. Eidell, Michael T. Hemann
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Concurrently depleting regulatory T cells and activating cytotoxic T cells in tumours Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-20
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Acoustic-pressure-driven ultrasonic activation of the mechanosensitive receptor RET and of cell proliferation in colonic tissue Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-20 Laura Zamfirov, Ngoc-Minh Nguyen, Maria Elena Fernández-Sánchez, Paula Cambronera Ghiglione, Eliott Teston, Alexandre Dizeux, Thomas Tiennot, Emmanuel Farge, Charlie Demené, Mickael Tanter
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NIS-Seq enables cell-type-agnostic optical perturbation screening Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-19 Caroline I. Fandrey, Marius Jentzsch, Peter Konopka, Alexander Hoch, Katja Blumenstock, Afraa Zackria, Salie Maasewerd, Marta Lovotti, Dorothee J. Lapp, Florian N. Gohr, Piotr Suwara, Jędrzej Świeżewski, Lukas Rossnagel, Fabienne Gobs, Maia Cristodaro, Lina Muhandes, Rayk Behrendt, Martin C. Lam, Klaus J. Walgenbach, Tobias Bald, Florian I. Schmidt, Eicke Latz, Jonathan L. Schmid-Burgk
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The analgesic potential of heavy water Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-19 Michael J. M. Fischer
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In Situ, High‐Resolution Quantification of CO2 Uptake Rates via Automated Off‐Gas Analysis Illuminates Carbon Uptake Dynamics in Cyanobacterial Cultures Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-19 Christopher M. Jones, Sean Innes, Steven Holland, Tyson Burch, Sydney Parrish, David R. Nielsen
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Stimulating localizable sensations Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-18 Marc H. Schieber
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Biosynthesis of Bacteriochlorophylls and Bacteriochlorophyllides in Escherichia coli Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-18 Baiyang Wang, Qiancheng Liao, Chenyang Xia, Fei Gan
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Mesenchymal Stem Cells‐Derived Small Extracellular Vesicles and Their Validation as a Promising Treatment for Chondrosarcoma in a 3D Model in Vitro Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-18 Eugenia Romano, Francesca Perut, Sofia Avnet, Gemma Di Pompo, Simona Silvestri, Felicia Roffo, Nicola Baldini, Paolo Antonio Netti, Enza Torino
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Toward a safer and more secure US bioeconomy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-16 Matthew C. Watson, Kunal J. Rambhia, Meghan J. Seltzer, Sarah R. Carter, Rebecca L. Moritz, Aurelia Attal-Juncqua, James Diggans, John Dileo
To enhance the safety and security of the US bioeconomy, a new public–private partnership should be established to facilitate information sharing and threat analysis among industry, government and academia, and to develop and deploy safeguards.
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The devolution of biosimilars regulations Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-16 Erik Doevendans, Peter van Meer, Huub Schellekens
After two decades of experience with biosimilars, physicochemical and in vitro biological comparison with their reference products appear sufficient to guarantee clinical safety and efficacy. Hence, the regulation of biosimilars has become redundant, and biopharmaceuticals should now be regulated through the generic pathway available for small molecules.
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CRISPR-StAR enables high-resolution genetic screening in complex in vivo models Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-16 Esther C. H. Uijttewaal, Joonsun Lee, Annika Charlotte Sell, Naomi Botay, Gintautas Vainorius, Maria Novatchkova, Juliane Baar, Jiaye Yang, Tobias Potzler, Sophie van der Leij, Christopher Lowden, Julia Sinner, Anais Elewaut, Milanka Gavrilovic, Anna Obenauf, Daniel Schramek, Ulrich Elling
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Efficient production of non-immunogenic, long circular RNAs for high protein yield Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-17
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Latent spaces for tumour transcriptomes Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-17 Adriana Ivich, Casey S. Greene
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Deep profiling of gene expression across 18 human cancers Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-17 Wei Qiu, Ayse B. Dincer, Joseph D. Janizek, Safiye Celik, Mikael J. Pittet, Kamila Naxerova, Su-In Lee
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Kinetic Modeling of the Antibody Disulfide Bond Reduction Reaction With Integrated Prediction of the Drug Load Profile for Cysteine‐Conjugated ADCs Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-17 Jan Tobias Weggen, Pedro González, Kimberly Hui, Ryan Bean, Michaela Wendeler, Jürgen Hubbuch
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An Additive‐Fabricated Biphasic Scaffold for Procedurally Promoting Bone Regeneration via Antioxidant and Osteogenesis Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-17 Chunyu Han, Zhenxu Wu, Yuqi Gao, Shuang Yang, Yu Wang, Min Guo, Yueyue Li, Wanzhong Yin, Ling Liu, Wenzhi Song, Peibiao Zhang, Liqiang Wang
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Scouring for essential non-coding RNAs Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-16 Pep Pàmies
RNA-targeting CRISPR screens reveal hundreds of functional long non-coding RNAs that are crucial for cell survival and implicated in cancer progression.
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A learned writing assistant for radiologists Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-16 Pep Pàmies
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De novo 2'-fucosyllactose biosynthesis using glucose as the sole carbon source by multiple engineered Bacillus subtilis. Metab. Eng. (IF 6.8) Pub Date : 2024-12-16 Quanwei Zhang,Xianhao Xu,Wei Zhang,Ziyang Huang,Yaokang Wu,Yanfeng Liu,Jianghua Li,Guocheng Du,Xueqin Lv,Long Liu
2'-Fucosyllactose (2'-FL) is the most abundant human milk oligosaccharide and plays significant roles in gut microbiome balance, neural development, and immunoregulation. However, current fermentation schemes using multiple carbon sources increase production cost and metabolism burden. This study reported the development of an engineered Bacillus subtilis strain that produces 2'-FL using glucose as
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A synthetic scaffold to target peptide–MHC complexes Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-13 Pallavi A. Balivada, Stephanie A. Gaglione, Michael E. Birnbaum
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Targeting peptide antigens using a multiallelic MHC I-binding system Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-13 Haotian Du, Leena Mallik, Daniel Hwang, Yi Sun, Chengzi Kaku, Daniel Hoces, Shirley M. Sun, Reem Ghinnagow, Stephen D. Carro, Hoang Anh T. Phan, Sagar Gupta, Wyatt Blackson, Hyejin Lee, Christian A. Choe, Devin Dersh, Jingjia Liu, Braxton Bell, Hongli Yang, Georgia F. Papadaki, Michael C. Young, Emily Zhou, Gina El Nesr, Kimia Dasteh Goli, Laurence C. Eisenlohr, Andy J. Minn, Rogelio A. Hernandez-Lopez
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A general system for targeting MHC class II–antigen complex via a single adaptable loop Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-13 Haotian Du, Jingjia Liu, Kevin M. Jude, Xinbo Yang, Ying Li, Braxton Bell, Hongli Yang, Audrey Kassardjian, Wyatt Blackson, Ali Mobedi, Udit Parekh, R. Andres Parra Sperberg, Jean-Philippe Julien, Elizabeth D. Mellins, K. Christopher Garcia, Po-Ssu Huang
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Efficient circular RNA synthesis for potent rolling circle translation Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-13 Yifei Du, Philipp Konrad Zuber, Huajuan Xiao, Xueyan Li, Yuliya Gordiyenko, V. Ramakrishnan
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Plant bling: cellulose that sparkles Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
Sparxell has made cellulose nanocrystals and could replace the shine in synthetic dyes, microplastics and unsustainable mined glitters such as titania or mica with natural, biodegradable components. Its cellulose nanocrystals reflect light to produce vibrant colors, just as in butterfly wings and peacock tails but using wood pulp or other plant waste instead. The colors are durable and fade resistant
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Evo learns biological complexity from the molecular to genome scale Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Iris Marchal
Generative artificial intelligence models of molecular biology are often restricted to individual molecules or DNA segments and are built in a way that makes them computationally demanding when applied to long sequences. The ability to capture broader genomic interactions will be crucial for both the understanding and engineering of complex biological processes. Writing in Science, Nguyen et al. introduce
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Base editing boosts hemoglobin in sickle cell disease Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
Beam Therapeutics’ early clinical data on its base-editing therapy BEAM-101 shows for the first time that the technology restores functional hemoglobin in people with sickle cell disease. In four patients treated with BEAM-101, functional fetal hemoglobin levels increased to over 60% at 1–6 months follow-up, and patients’ red blood cells had less sickling, reduced cell adhesion and improved flow properties
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Stem cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
Recent patents relating to compositions, methods of preparation and use of stem cells.
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CRISPR unlocks a sweet tomato that keeps its size Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Iris Marchal
The domestication of tomato (Solanum lycopersicum) has led to a massive increase in fruit size but at the cost of decreased sugar levels, a negative correlation that is probably the consequence of a loss of high-sugar alleles. In a study published in Nature, Zhang et al. engineer a sweet tomato that maintains its high yield and weight by mutating a gene that encodes a protein that regulates sugar accumulation
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BioNTech boosts oncology pipeline with China buy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
One year after partnering with clinical-stage Biotheus on a bispecific antibody targeting PD-L1 and VEGF-A, BioNTech announced the acquisition of the Zhuhai, China–based company for $800 million, with up to $150 million in potential milestone payments. The purchase gives BioNTech full global rights to Biotheus’s lead candidate PM8002, also known as BNT327; a pipeline of ten programs in various stages
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Discovering the crucial function of long noncoding RNAs Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Iris Marchal
The human genome contains thousands of long noncoding RNAs (lncRNAs), of which very few have been linked to a functional role. Although DNA-targeting CRISPR screens have identified functional lncRNAs, these screens suffer from limited specificity as DNA-based perturbation of lncRNA loci might also suppress nearby protein-coding genes and other regulatory elements. Writing in Cell, Liang et al. overcome
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An update on Cuban biotech Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 José A. Buxadó, Miladys Limonta Fernández, Gerardo E. Guillén Nieto, Raimundo Ubieta Gómez, Marta Ayala Ávila
Cuba provides a rare example of a publicly owned biotech sector in a low-income country. Since its founding in 1986, Cuba’s Center for Genetic Engineering and Biotechnology (CIGB) has overseen the development of the country’s biopharmaceutical sector, from the initial conception of a drug through preclinical studies, clinical trials, licensing, manufacturing and export. We outlined the achievements
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Using artificial intelligence to develop gene therapy for the lungs Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
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Intellectual property training should be embedded in the biomedical education process Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Randal A. Serafini, Micaila D. E. Curtis, Stella Alimperti
Implementation of intellectual property education in academic institutions can result in increased opportunities for protecting intellectual property and limit costs, but to be successful technology transfer offices must also adapt.
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11
Recent moves of note in and around the biotech and pharma industries.
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Leveraging machine learning and big data techniques to map the global patent landscape of phage therapy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Maxime Descartes Mbogning Fonkou, Jude Dzevela Kong
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A technical approach to global plant genome editing regulation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Evan Groover, Elizabeth Njuguna, Kailash Chander Bansal, Anne Muia, Musa Kwehangana, Christopher Simuntala, Richard Lloyd Mills, Emmanuel Kwakye, Pedro Rocha, Josephine Amedu, Eduardo Morillo, Mohana Anita Anthonysamy, A. B. M. Khaldun, Lilian Chimpepo, Massouroudini Akoudjin, D. M. J. B. Senanayake, Dechen Wangmo, Dessalegn Atnafu, Geronima P. Eusebio, Chalinee Kongsawat, Melinda Kliegman
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3D Printed GelMA/CHIMA Cross‐Linked Network Hydrogel for Angiogenesis Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-12 Zixian Liu, Meng Li, Rong Cheng, Lijing Wang, Peiyi Hou, Lu Han, Shengbo Sang
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Intestinal mucosal barrier repair and immune regulation with an AI-developed gut-restricted PHD inhibitor Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Yanyun Fu, Xiao Ding, Man Zhang, Chunlei Feng, Ziqi Yan, Feng Wang, Jianyu Xu, Xiaoxia Lin, Xiaoyu Ding, Ling Wang, Yaya Fan, Taotao Li, Yushu Yin, Xing Liang, Chenxi Xu, Shan Chen, Fadi E. Pulous, David Gennert, Frank W. Pun, Petrina Kamya, Feng Ren, Alex Aliper, Alex Zhavoronkov
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Efficient non-viral immune cell engineering using circular single-stranded DNA-mediated genomic integration Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-11 Keqiang Xie, Jakob Starzyk, Ishita Majumdar, Jiao Wang, Katerina Rincones, Thao Tran, Danna Lee, Sarah Niemi, John Famiglietti, Bernhard Suter, Richard Shan, Hao Wu
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Publisher Correction: Targeting overexpressed antigens in glioblastoma via CAR T cells with computationally designed high-affinity protein binders Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-11 Zhen Xia, Qihan Jin, Zhilin Long, Yexuan He, Fuyi Liu, Chengfang Sun, Jinyang Liao, Chun Wang, Chentong Wang, Jian Zheng, Weixi Zhao, Tianxin Zhang, Jeremy N. Rich, Yongdeng Zhang, Longxing Cao, Qi Xie
Correction to: Nature Biomedical Engineering https://doi.org/10.1038/s41551-024-01258-8, published online 17 October 2024.
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Construction of a synthetic metabolic pathway for biosynthesis of threonine from ethylene glycol Metab. Eng. (IF 6.8) Pub Date : 2024-12-11 Cláudio J.R. Frazão, Nils Wagner, T.A. Stefanie Nguyen, Thomas Walther
Ethylene glycol is a promising substrate for bioprocesses which can be derived from widely abundant CO2 or plastic waste. In this work, we describe the construction of an eight-step synthetic metabolic pathway enabling carbon-conserving biosynthesis of threonine from ethylene glycol. This route extends the previously disclosed synthetic threose-dependent glycolaldehyde assimilation (STEGA) pathway
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Biotechnology and Bioengineering: Volume 122, Number 1, January 2025 Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-11
Click on the article title to read more.
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Fluorescent Reporter‐Based Fiber Optic Probe for Continuous Detection of Antibodies Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-11 Suman Nandy, Binh V. Vu, Vijay M. Maranholkar, Atul Goyal, Katerina Kourentzi, Richard C. Willson
Measurement of antibody and antibody fusion protein concentration is vital for process development and manufacturing. Continuous, in‐line monitoring of antibody concentration could be useful in a variety of applications, such as controlling the loading of protein A columns to prevent breakthrough, monitoring bioreactor titer, and detecting leaks past ultrafiltration/diafiltration membranes. Molecule‐specific
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Oleaginous Yeast Biology Elucidated With Comparative Transcriptomics Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-11 Sarah J. Weintraub, Zekun Li, Carter L. Nakagawa, Joseph H. Collins, Eric M. Young
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Monitoring of the Biotechnological Production of Dihydroxyacetone Using a Low‐Field 1H NMR Spectrometer Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-11 Lukas Mahler, Ebru Tasdemir, Anna Nickisch‐Hartfiel, Christian Mayer, Martin Jaeger
The concept of sustainable production necessitates the utilization of waste and by‐products as raw materials, the implementation of biotechnological processes, and the introduction of automated real‐time monitoring for efficient use of resources. One example is the biocatalyzed conversion of the reusable by‐product glycerin by acetic acid bacteria to dihydroxyacetone (DHA), which is of great importance
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Artificial intelligence-guided design of lipid nanoparticles for pulmonary gene therapy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-10 Jacob Witten, Idris Raji, Rajith S. Manan, Emily Beyer, Sandra Bartlett, Yinghua Tang, Mehrnoosh Ebadi, Junying Lei, Dien Nguyen, Favour Oladimeji, Allen Yujie Jiang, Elise MacDonald, Yizong Hu, Haseeb Mughal, Ava Self, Evan Collins, Ziying Yan, John F. Engelhardt, Robert Langer, Daniel G. Anderson
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Heterogeneity-driven phenotypic plasticity and treatment response in branched-organoid models of pancreatic ductal adenocarcinoma Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-10 Aristeidis Papargyriou, Mulham Najajreh, David P. Cook, Carlo H. Maurer, Stefanie Bärthel, Hendrik A. Messal, Sakthi K. Ravichandran, Till Richter, Moritz Knolle, Thomas Metzler, Akul R. Shastri, Rupert Öllinger, Jacob Jasper, Laura Schmidleitner, Surui Wang, Christian Schneeweis, Hellen Ishikawa-Ankerhold, Thomas Engleitner, Laura Mataite, Mariia Semina, Hussein Trabulssi, Sebastian Lange, Aashreya
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Increased Mevalonate Production Using Engineered Citrate Synthase and Phosphofructokinase Variants of Escherichia coli Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-10 Jeffrey K. Dodelin, Abigail E. Rose, Hemshikha Rajpurohit, Mark A. Eiteman
Mevalonate is a biochemical precursor to a wide range of isoprenoids. The mevalonate pathway uses three moles of acetyl‐CoA, and therefore native pathways which metabolize acetyl‐CoA compete with mevalonate synthesis. Moreover, the final step in mevalonate formation, mediated by hydroxymethylglutaryl‐CoA reductase, requires NADPH as a co‐substrate. This study focuses on chromosomal modification of
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Ovarian tumor cells gain competitive advantage by actively reducing the cellular fitness of microenvironment cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-09 Esha Madan, António M. Palma, Vignesh Vudatha, Amit Kumar, Praveen Bhoopathi, Jochen Wilhelm, Tytus Bernas, Patrick C. Martin, Gaurav Bilolikar, Aenya Gogna, Maria Leonor Peixoto, Isabelle Dreier, Thais Fenz Araujo, Elena Garre, Anna Gustafsson, Kalpana Deepa Priya Dorayappan, Narsimha Mamidi, Zhaoyu Sun, Michail Yekelchyk, Davide Accardi, Amalie Lykke Olsen, Lin Lin, Asaf Ashkenazy Titelman, Michael
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Photoproduction of Aviation Fuel β‐Caryophyllene From the Eukaryotic Green Microalga Chlamydomonas reinhardtii Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-09 Xiaotan Dou, Mengjie Li, Yunlong Ge, Gerui Yin, Xinyu Wang, Song Xue, Baolin Jia, Lihan Zi, Huihui Wan, Yimei Xi, Zhanyou Chi, Fantao Kong
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Metabolic engineering improves transduction efficiency and downstream vector isolation by altering the lipid composition of extracellular vesicle-enclosed AAV Metab. Eng. (IF 6.8) Pub Date : 2024-12-07 Paula Espinoza, Ming Cheng, Carrie Ng, Demitri de la Cruz, Elizabeth D. Wasson, Deirdre M. McCarthy, Pradeep G. Bhide, Casey A. Maguire, Miguel C. Santoscoy
Adeno-associated viruses (AAV) are promising vectors for gene therapy due to their efficacy in vivo. However, there is room for improvement to address key limitations such as the pre-existing immunity to AAV in patients, high-dose toxicity, and relatively low efficiency for some cell types. This study introduces a metabolic engineering approach, using knockout of the enzyme phosphatidylserine synthase
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Integrated Experimental and Mathematical Modeling to Guide Microbial Biocatalysis: Pseudomonas putida Conversion of L‐Phenylalanine to trans‐Cinnamic Acid Biotechnol. Bioeng. (IF 3.5) Pub Date : 2024-12-07 Sompot Antimanon, Sheila Ingemann Jensen, John M. Woodley
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Challenges for developing broad-based mucosal vaccines for respiratory viruses Nat. Biotechnol. (IF 33.1) Pub Date : 2024-12-06 Junghwa Seo, Jordan Polster, Benjamin Israelow, Kizzmekia S. Corbett-Helaire, David R. Martinez
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Simple and effective embedding model for single-cell biology built from ChatGPT Nat. Biomed. Eng. (IF 26.8) Pub Date : 2024-12-06 Yiqun Chen, James Zou