The ability to control and account for environmental conditions is essential when conducting ecological experiments. Two frequent approaches are pot and field experiments. Pot experiments under common garden conditions are excellent for detecting distinct plant responses to specific experimental treatments. Even maternal effects can be accounted for if plants are grown under the same conditions over

Plant pigments are diverse natural molecules involved in numerous biological functions such as development, growth, and metabolism. As plants age, not only new organs will be formed, but also, they will acquire the necessary pigments in response to the environment and endogenous programming in order to achieve reproductive success. Among the endogenous cues, the small RNAs (sRNAs), an endogenous group

DELAY OF GERMINATION1 (DOG1) is a critical regulator of seed dormancy and seed thermoinhibition. However, how DOG1 expression is regulated by post-translational modifications and how seeds transmit the high-temperature signal to DOG1 remain largely unknown. ALFIN1-like 6/7 (AL6/7) was previously found to repress DOG1 expression during seed imbibition. Here, we found that AL6/7 represses seed dormancy

Legumes establish nitrogen-fixing symbioses with rhizobia. On the contrary, they can be attacked concomitantly by pathogens, raising the question of potential trade-offs between mutualism and immunity. In order to study such trade-offs, we used a tripartite system involving the model legume Lotus japonicus, its rhizobial symbiont Mesorhizobium loti and the soilborne pathogen Ralstonia solanacearum

Introduction The current food supply chain experiences major losses at the postharvest level due to both injury and infection by pathogenic fungi (Lipinski et al., 2013; Zhang et al., 2021). Tomato is a major global commodity, with 182.3 million tons of fruit produced in 2019 (FAO, 2019). However, its yield is heavily restricted due to pathogens, and 50% of yield loss occurs at the postharvest stage

Tanshinones, isolated from Salvia miltiorrhiza, is efficient to treat cardiovascular and cerebrovascular diseases. Abscisic acid (ABA) treatment is found to promote tanshinone biosynthesis; however, the underlying mechanism has not been fully elucidated. A protein kinase namely SmAPK1 was identified as an important positive regulator of ABA-induced tanshinone accumulation in S. miltiorrhiza. Using

Retrospective information about plant ecophysiology and the climate system are key inputs in Earth system and vegetation models. Dendrochronology provides such information with large spatiotemporal coverage, and carbon-isotope analysis across tree-ring series is among the most advanced dendrochronological tools. For the past 70 years, this analysis was performed on whole molecules and, to this day

Summary Leaf dark respiration (Rdark), an important yet rarely quantified component of carbon cycling in forest ecosystems, is often simulated from leaf traits such as the maximum carboxylation capacity (Vcmax), leaf mass per area (LMA), nitrogen (N) and phosphorus (P) concentrations, in terrestrial biosphere models. However, the validity of these relationships across forest types remains to be thoroughly

Summary Adaptive radiation in Ophrys orchids leads to complex floral phenotypes that vary in scent, color and shape. Using a novel pipeline to quantify these phenotypes, we investigated trait divergence at early stages of speciation in six populations of Ophrys aveyronensis experiencing recent allopatry. By integrating different genetic/genomic techniques, we investigated: variation and integration

Summary We investigate the impact of a 20‐yr irrigation on root water uptake (RWU) and drought stress release in a naturally dry Scots pine forest. We use a combination of electrical resistivity tomography to image RWU, drone flights to image the crown stress and sensors to monitor soil water content. Our findings suggest that increased water availability enhances root growth and resource use efficiency

Summary Replicated trait evolution can provide insights into the mechanisms underlying the evolution of biodiversity. One example of replicated evolution is the awn, an organ elaboration in grass inflorescences. Awns are likely homologous to leaf blades. We hypothesized that awns have evolved repeatedly because a conserved leaf blade developmental program is continuously activated and suppressed over

Summary Cross‐kingdom RNA interference (ckRNAi) is a mechanism of interspecies communication where small RNAs (sRNAs) are transported from one organism to another; these sRNAs silence target genes in trans by loading into host AGO proteins. In this work, we investigated the occurrence of ckRNAi in Arbuscular Mycorrhizal Symbiosis (AMS). We used an in silico prediction analysis to identify a sRNA (Rir2216)

Summary A dodder (Cuscuta) often simultaneously parasitizes two or more adjacent hosts. Phosphate (Pi) deficiency is a common stress for plants, and plants often interact with soil microbes, including arbuscular mycorrhizal fungi (AMF), to cope with Pi stress. Little is known about whether dodder transmits Pi deficiency‐induced systemic signals between different hosts. In this study, dodder‐connected

Summary Localized clathrin mediated endocytosis is vital for secretion and wall deposition in apical growing plant cells. Adaptor and signalling proteins, along with phosphoinositides, are known to play a regulatory, yet poorly defined role in this process. Here we investigated the function of Arabidopsis ECA4 and EPSIN3, putative mediators of the process, in pollen tubes and root hairs. Homozygous

Summary Temperatures perceived early in the life cycle of mother plants can affect the germination of the offspring seeds. In Arabidopsis thaliana, vernalisation‐insensitive mutants showed altered germination response to elevated maternal temperature, hence revealing a strong genetic determinism. However, the genetic control of this maternal effect and its prevalence across natural populations remain

SummaryThe origin story of land plants – the pivotal evolutionary event that paved the way for terrestrial ecosystems of today to flourish – lies within their closest living relatives: the streptophyte algae. Streptophyte cell wall composition has evolved such that profiles of cell wall polysaccharides can be used as taxonomic markers. Since xyloglucan is restricted to the streptophyte lineage, we

Summary Numerous herbivore‐induced plant volatiles (HIPVs) play important roles in plant defense. In tea plants (Camellia sinensis), (Z)‐3‐hexenyl acetate (3‐HAC) has been characterized as associated with resistance to herbivores. To date, how tea plants biosynthesize and regulate 3‐HAC to resist herbivores remain unclear. Based on transcriptomes assembled from Ectropis obliqua‐fed leaves, a cDNA encoding

Summary Long noncoding RNAs, including intergenic lncRNAs (lincRNAs), play a key role in various biological processes throughout the plant life cycle, and the advent of single‐cell RNA sequencing (scRNA‐seq) technology has opened up a valuable avenue for scrutinizing the intricate roles of lincRNAs in cellular processes. Here, we identified a new batch of lincRNAs using scRNA‐seq data from diverse

Summary Chromosomal inversions can preserve combinations of favorable alleles by suppressing recombination. Simultaneously, they reduce the effectiveness of purifying selection enabling deleterious alleles to accumulate. This study explores how areas of low recombination, including centromeric regions and chromosomal inversions, contribute to the accumulation of deleterious and favorable loci in 225

SummaryDirect human activity and global climatic changes are threatening the existence of many vegetated habitats. Seedling establishment, one of the riskiest plant life stages, must be successful for such habitats to persist. The establishment of seedlings is known to be enhanced by nurse effects, but most studies to date have looked at the nursing effects of plants while sidelining inanimate objects

Summary Here, we investigated the molecular genetic basis of mite domatia, structures on the underside of leaves that house mutualistic mites, and intraspecific variation in domatia size in Vitis riparia (riverbank grape). Domatia and leaf traits were measured, and the transcriptomes of mite domatia from two genotypes of V. riparia with distinct domatia sizes were sequenced to investigate the molecular

SummaryPhotoperiod is an environmental signal that varies predictably across the year. Therefore, the duration of sunlight available for photosynthesis and in turn the ability of plants to accumulate carbon resources also fluctuates across the year. To adapt to these variations in photoperiod, the metabolic daylength measurement (MDLM) system measures the photosynthetic period rather than the absolute

Summary Photoprotection in plants includes processes collectively known as nonphotochemical quenching (NPQ), which quench excess excitation‐energy in photosystem II. NPQ is triggered by acidification of the thylakoid lumen, which leads to PsbS‐protein protonation and violaxanthin de‐epoxidase activation, resulting in zeaxanthin accumulation. Despite extensive study, questions persist about the mechanisms

Summary In Arabidopsis thaliana, the asymmetric cell division (ACD) of the zygote gives rise to the embryo proper and an extraembryonic suspensor, respectively. This process is controlled by the ERECTA‐YODA‐MPK3/6 receptor kinase‐MAP kinase‐signaling pathway, which also orchestrates ACDs in the epidermis. In this context, the bHLH transcription factor ICE1/SCRM is negatively controlled by MPK3/6‐directed

Summary Differences in soil mobility and assimilation costs between organic and inorganic nitrogen (N) compounds would hypothetically induce plant phenotypic plasticity to optimize acquisition of, and performance on, the different N forms. Here we evaluated this hypothesis experimentally and theoretically. We grew Arabidopsis in split‐root setups combined with stable isotope labelling to study uptake

Many plants with enhanced traits have been engineered via the overexpression of target genes conferring specific benefits to farmers and/or consumers. This is most commonly achieved via transgenic overexpression of either a native or a heterologous gene. However, very few of these transgenic crops have a practical impact due to negative public perceptions of conventional genetically modified (GM) crops

Summary Both mistletoes and their hosts are challenged by increasing drought, highlighting the necessity of understanding their comparative hydraulic properties. The high transpiration of mistletoes requires efficient water transport, while high xylem tensions demand strong embolism resistance, representing a hydraulic paradox. This study, conducted across four environments with different aridity indices

Summary Perennial herbs of seasonal climates invest carbon into belowground storage organs (e.g. rhizomes) to support growth when photosynthetic acquisition cannot cover demands. An alternative explanation interprets storage allocation as surplus carbon that is undeployable for growth when plants are limited by nutrients/water. We analysed relative investments to rhizomes to see to which of these explanations

Summary Pathogenesis‐related (PR) proteins are induced by abiotic and biotic stresses and generally considered as part of the plant defense mechanism. However, it remains yet largely unclear if and how they are involved in virus infection. Our recent quantitative, comparative proteomic study identified three PR‐5 family proteins that are significantly differentially accumulated in the plasmodesmata

Summary Flavor is a crucial aspect of the eating experience, reflecting evolving consumer preferences for fruits with enhanced quality. Modern fruit breeding programs prioritize improving quality traits aligned with consumer tastes. However, defining fruit‐quality attributes that significantly impact consumer preference is a current challenge faced by the industry and breeders. This study proposes

Summary Early stress detection of crops requires a thorough understanding of the signals showing the very first symptoms of the alterations in the photosynthetic light reactions. Detection of the activation of the regulated heat dissipation mechanism is crucial to complement passively induced fluorescence to resolve ambuiguities in energy partitioning. Using leaf spectroscopy, we evaluated the capability

Summary Pummelo (Citrus maxima) is one of the most important citrus crops and have genetically contributed sweet orange, lemon and most citrus cultivars. It has been cultivated for c. 4000 years in China and is also distributed in many Southeast Asian countries. Nevertheless, the origin and dispersal of pummelo remain elusive. We conducted whole‐genome sequencing for 290 pummelo accessions from China

Summary Elton's biotic resistance hypothesis predicts that biodiversity can resist the establishment of invasive plants. However, whether and how within‐species diversity mediates the impacts of successfully established invaders is poorly understood, particularly in the face of climate change. We used an experimental system to test the effect of intraspecific diversity of a native foundation species

Salt tolerance enables plants to withstand the toxicity of high concentrations of soluble salts, particularly NaCl. Increasing soil salinity slows plant growth and ultimately affects productivity with varying levels of impact depending on the plant species, duration of exposure, and stage of development. Therefore, engineering plant salt tolerance, defined as maintaining superior growth performance

Summary Among flowering plants, self‐compatibility, longer lifespan, and generalized pollination syndrome are each thought to increase the lifetime odds of finding a mate, particularly in isolated locales. An accumulated body of evidence supports the role of breeding system in island colonization, but less is known about the impact of other traits and their interactions during establishment. We employ

Summary Sun‐loving plants undergo shade avoidance syndrome (SAS) to compete with their neighbors for sunlight in shade conditions. Phytochrome B (phyB) plays a dominant role in sensing the shading signals (low red to far‐red ratios) and triggering SAS. Shade drives phyB conversion to inactive form, consequently leading to the accumulation of PHYTOCHROMEINTERACTING FACTOR 4 (PIF4) that promotes plant

SummaryLeaf thickness, the leaf growth in the third dimension as quantified by the distance between the adaxial and abaxial surface, is an indispensable aspect of leaf development. The fitness of a plant is strongly influenced by leaf thickness via modulation of major physiological processes, including photosynthesis and water use efficiency. The cellular basis of leaf thickness by alterations in either

Summary The Anthropocene exerts various pressures and influences on the stability and function of the Earth's ecosystems. However, our understanding of how the microbiome responds in form and function to these disturbances is still limited, particularly when considering the phyllosphere, which represents one of the largest microbial reservoirs in the terrestrial ecosystem. In this study, we comprehensively

This Editorial introduces the Virtual Issue ‘Marine macrophytes in a changing world: mechanisms underpinning responses and resilience to environmental stress’ that includes the following papers: Campbell et al. (2018), Collier et al. (2018), Ferreira et al. (2014), Jung et al. (2023), Konotchick et al. (2013), Litsi‐Mizan et al. (2023), McIntire & Fajardo (2014), Murúa et al. (2020), Pedersen et al

Summary Leaf architecture impacts the ease of gases diffusion, biochemical process, and photosynthetic performance. For balsam poplar, a widespread North American species, the influence of water availability on leaf anatomy and subsequent photosynthetic performance remains unknown. To address this shortcoming, we characterized the anatomical changes across the leaf profile in three‐dimensional space

Summary Transcription factors of the CYCLING DOF FACTOR (CDF) family activate in potato the SP6A FT tuberization signal in leaves. In modern cultivars, truncated StCDF1.2 alleles override strict SD control by stabilizing the StCDF1 protein, which leads to StCOL1 suppression and impaired activation of the antagonic SP5G paralog. By using DAP‐seq and RNA‐seq studies, we here show that StCDF1 not only

Summary Genome merging is a common phenomenon causing a wide range of consequences on phenotype, adaptation, and gene expression, yet its broader implications are not well‐understood. Two consequences of genome merging on gene expression remain particularly poorly understood: dosage effects and evolution of expression. We employed Chlamydomonas reinhardtii as a model to investigate the effects of asymmetric

SummaryThe plant microbiota research field has rapidly shifted from efforts aimed at gaining a descriptive understanding of microbiota composition to a focus on acquiring mechanistic insights into microbiota functions and assembly rules. This evolution was driven by our ability to establish comprehensive collections of plant‐associated microbes and to reconstruct meaningful microbial synthetic communities

Summary Accumulation of triacylglycerols (TAGs) is crucial during various stages of plant development. In Arabidopsis, two enzymes share overlapping functions to produce TAGs, namely acyl‐CoA:diacylglycerol acyltransferase 1 (DGAT1) and phospholipid:diacylglycerol acyltransferase 1 (PDAT1). Loss of function of both genes in a dgat1‐1/pdat1‐2 double mutant is gametophyte lethal. However, the key regulatory

Summary The first year in a tree's life is characterized by distinct morphological changes, requiring constant adjustments of the hydraulic system. Despite their importance for the natural regeneration of forests and future vegetation composition, little has been known about the hydraulics of tree seedlings. At different times across the first growing season, we analysed xylem area‐specific (Kshoot_Axyl)

Summary Here, we developed and applied models to quantitatively reconstruct forest cover and biomass changes at three lakes in northwestern Amazonia over the past > 1500 yr. We used remotely sensed data and a modern dataset of 50 Amazonian lakes to develop generalized linear models that predict aboveground biomass, using phytolith morphotypes and forest cover as predictor variables. Also, we applied

Summary Ralstonia pseudosolanacearum, a plant pathogen responsible for bacterial wilt in numerous plant species, exhibits paradoxical growth in the host by achieving high bacterial densities in xylem sap, an environment traditionally considered nutrient‐poor. This study combined in vitro experiments and mathematical modeling to elucidate the population dynamics of R. pseudosolanacearum within plants

Summary The endoplasmic reticulum‐associated degradation (ERAD) system eliminates misfolded and short‐lived proteins to maintain physiological homeostasis in the cell. We have previously reported that ERAD is involved in salt tolerance in Arabidopsis. Given the central role of the phytohormone abscisic acid (ABA) in plant stress responses, we sought to identify potential intersections between the ABA

Summary Autophagy is a conserved degradation pathway that regulates the clearance of paternal substrate at the early embryogenesis stage of animals. However, its mode of action is likely different in plants, which can regenerate through apomixis without fertilisation. Somatic embryogenesis (SE) is a unique plant process widely used for plant propagation and germplasm utilisation. Here, we studied citrus

Summary In Magnaporthe oryzae, the Pmk1 MAP kinase signaling pathway regulates appressorium formation, plant penetration, effector secretion, and invasive growth. While the Mst11‐Mst7‐Pmk1 cascade was characterized two decades ago, knowledge of its signaling in the intracellular network remains limited. In this study, we demonstrate that the endosomal surface scaffolds Pmk1 MAPK signaling and Msb2

Summary Historically, ferns have been described as underutilized by insects. However, studies have shown a diversity of insects interacting with ferns, although the evolutionary and ecological drivers of these interactions are still to be untangled. To fill these gaps, we compiled more than 100 yr of global data on insect–fern interactions from the literature comprising 374 fern and 649 insect species

Summary DNA methylation is an essential epigenetic modification for gene regulation in plant growth and development. However, the precise mechanisms of DNA methylation remain poorly understood, especially in woody plants. We employed whole‐genome bisulfite sequencing (WGBS), assays for transposase‐accessible chromatin using sequencing (ATAC‐seq), and RNA‐Seq to investigate epigenetic regulatory relationships

Summary Nitrate (NO3−) serves as the primary inorganic nitrogen source assimilated by most terrestrial plants. The acquisition of nitrate from the soil is facilitated by NITRATE TRANSPORTERS (NRTs), with NRT2.1 being the key high‐affinity nitrate transporter. The activity of NRT2.1, which has multiple potential phosphorylation sites, is intricately regulated under various physiological conditions.

Summary Wood anatomy plays a key role in plants' ability to persist under drought and should therefore predict demography. Plants balance their resource allocation among wood cell types responsible for different functions. However, it remains unclear how these anatomical trade‐offs vary with water availability, and the extent to which they influence demographic rates. We investigated how wood anatomical

Summary Cover crop integration into grain crop rotations is a promising strategy for mitigating nematode‐induced diseases in agriculture. However, the precise mechanisms underlying this phenomenon remain elusive. Here, we first assessed the impact of five commonly used cover crops on the suppression of rice root‐knot nematodes (RKNs). We then chose ryegrass as a model to explore the mechanistic basis

The intricate crosstalk between light and temperature signals determines plant architecture, growth rate and the timing of developmental transitions. Both signals are critical environmental cues, acting as essential triggers of different developmental pathways, leading to major changes in transcription. Up to one-third of Arabidopsis genes are differentially expressed between dark- and light-grown

SummaryReactive oxygen species (ROS) are among the most important signaling molecules, playing a significant role in plant growth, development, and responses to various environmental stresses. Respiratory burst oxidase homologs (RBOHs) are key enzymes in ROS production. Plants tightly regulate the activation and deactivation of RBOHs through various post‐translational modifications (PTMs), including

SummaryThe ability to accumulate nutrients is a hallmark for living creatures and plants evolved highly effective nutrient transport systems, especially for the uptake of potassium (K+). However, plants also developed mechanisms that enable the rapid extrusion of K+ in combination with anions. The combined release of K+ and anions is probably an ancient extrusion system, as it is found in the Characeae

SummaryPlants rely on solar energy for growth through photosynthesis, yet excessive light intensity can induce physiological damage. Despite the considerable harm, inadequate attention has been directed toward understanding how plant‐associated microorganisms mitigate this stress, and the impact of high light intensity on plant microbial communities remains underexplored. Through this Viewpoint, we