Beneficial microorganisms (BMs) promote plant growth and enhance stress resistance. This review summarizes how BMs induce growth promotion by improving nutrient uptake, producing growth-promoting hormones and stimulating root development. How BMs enhance disease resistance and help protect plants from abiotic stresses has also been explored. Growth-defense trade-offs are known to affect the ability

SummaryTomato fruit ripening is a complex developmental process that is important for fruit quality and shelf life. Many factors, including ethylene and several key transcription factors, have been shown to play important roles in the regulation of tomato fruit ripening. However, our understanding of the regulation of tomato fruit ripening is still limited. Here, we describe mut26, an EMS‐induced tomato

Elevated stress signaling compromises plant growth by suppressing proliferative and formative division in the meristem. Plant Elicitor Peptide (PEP), an endogenous danger signal triggered by biotic and abiotic stresses in Arabidopsis (Arabidopsis thaliana), suppresses proliferative division, alters xylem vessel organization, and disrupts cell-to-cell symplastic connections in roots. To gain insight

Summary Pollination syndromes are a key component of flowering plant diversification, prompting questions about the architecture of single traits and genetic coordination among traits. Here, we investigate the genetics of extreme floral divergence between naturally hybridizing monkeyflowers, Mimulus parishii (self‐pollinated) and M. cardinalis (hummingbird‐pollinated). We mapped quantitative trait

Pumpkin (Cucurbita maxima D.) is typically monoecious with individual male and female flowers, and its yield is associated with the degree of femaleness, i.e. the ratio of female to male flowers produced by the plant. Subgynoecy represents a sex form with a high degree of femaleness, but the regulatory mechanisms in pumpkin remain poorly understood. In this study, using the F2 population crossed from

Collections of insertional mutants have been instrumental for characterizing the functional relevance of genes in different model organisms, including Arabidopsis (Arabidopsis thaliana). However, mutations may often result in subtle phenotypes, rendering it difficult to pinpoint the function of a knocked-out gene. Here, we present a data-integrative modeling approach that enables predicting the effects

Villins, which were originally named after their occurrence in mammalian microvilli, contain a gelsolin domain and a C-terminal villin headpiece domain. Both domains can bind actin; one villin molecule can therefore bind to two actin filaments, which enables it to function in actin bundling. This is in contrast to the related gelsolin, which has only a calcium-dependent actin-severing function. In

Among the vast diversity of plants, we often focus our admiration, conservation efforts and research on vascular plants: the towering trees, flowering shrubs, and beneficial grasses and herbs. However, this emphasis reveals a bias that leaves the non-vascular plants — the tiny, overlooked, inconspicuous plants — hidden in the shadows, literally. These ‘lower plants’, as the research community likes

On 24 May 2024, the World Intellectual Property Organization adopted the Treaty on Intellectual Property, Genetic Resources and Associated Traditional Knowledge (hereafter, the Treaty). Although it has been hailed as a victory for Indigenous peoples and local communities1,2, its effectiveness will depend on how the Treaty is implemented in national law. The cornerstone of the Treaty is the requirement

December is traditionally a time for looking back at the year that has passed. For plant biology, drought has been a frequently raised topic in 2024 — and 2025 is unlikely to be any different.

SummaryOver‐application of potassium (K) fertilizer in fields has a negative impact on the environment. Developing rice varieties with high KUE will reduce fertilizer for sustainable agriculture. However, the genetic basis of KUE in a more diverse and inclusive population remains largely unexplored. Here, we show that the transcription factor OsNAC25 enhances K+ uptake and confers high KUE under low

SummaryWheat (Triticum aestivum L., 2n = 6x = 42, AABBDD) is one of the most important food crops in the world. CRISPR/Cas12i3, which belongs to the type V‐I Cas system, has attracted extensive attention recently due to its smaller protein size and its less‐restricted canonical ‘TTN’ protospacer adjacent motif (PAM). However, due to its relatively lower editing efficacy in plants and the hexaploidy

Histone acetylation and H3K4 trimethylation (H3K4me3) are associated with active transcription. However, how they cooperate to regulate transcription in plants remains largely unclear. Our study revealed that GLOBAL TRANSCRIPTION FACTOR GROUP E 4 (GTE4) binds to acetylated histones and forms a complex with the functionally redundant H3K4me3-binding EMSY-like proteins EML1 or EML2 (EML1/2) in Arabidopsis

Salicylic acid (SA) is a prominent defense hormone whose basal level, organ-specific accumulation, and physiological role vary widely among plant species. Of the two known pathways of plant SA biosynthesis, the phenylalanine ammonia lyase (PAL) pathway is more ancient and universal but its biosynthetic and physiological roles in diverse plant species remain unclear. Studies in which the PAL pathway

Sugar transport plays a pivotal role in determining the productivity of plants and their capacity to act as carbon sinks. In the major fruit crop grapevine (Vitis vinifera L.), the transporter gene Vitis vinifera Sugars Will Eventually be Exported Transporter 15 (VvSWEET15)is strongly expressed during berry ripening. However, the specific functions of VvSWEET15 and the mechanisms governing its transcriptional

Root hairs are tip-growing cells that anchor plants in the soil and are critical for water uptake, nutrient acquisition, and plant–environment interactions. While the molecular mechanisms that maintain the polar growth of root hairs through the asymmetric distribution of proteins, such as RHO-RELATED PROTEIN FROM PLANTS 2 (ROP2), have been described, it is unclear whether and how the transcripts encoding

The widely distributed MutS gene family functions in recombination, DNA repair, and protein translation. Multiple evolutionary processes have expanded this gene family in plants relative to other eukaryotes. Here, we investigate the origins and functions of these plant-specific genes. Cyanobacterial-like MutS1 and MutS2 genes were ancestrally gained via plastid endosymbiotic gene transfer. MutS1 was

SummaryDroughts of increasing severity and frequency are a primary cause of forest mortality associated with climate change. Yet, fundamental knowledge gaps regarding the complex physiology of trees limit the development of more effective management strategies to mitigate drought effects on forests. Here, we highlight some of the basic research needed to better understand tree drought physiology and

Introduction Mountains play crucial roles in sustaining biodiversity by simultaneously serving as cradles, museums, or graves (Rangel et al., 2018; Rahbek et al., 2019), and are vital for the survival and sustainable development of human societies (Perrigo et al., 2020). The long-term changes in temperature and precipitation regimes driven by global warming have the potential to cause significant shifts

The optical properties of lobed palisade mesophyll cells remain poorly understood despite their presence in diverse taxa and the critical role of the palisade layer in leaf-light interactions and carbon assimilation. Using micro-computed tomography, 3D ray tracing simulations, and physiological experiments, we tested the interactions between palisade cell geometry, chloroplast localization, light directional

Summary Abscisic acid (ABA) and jasmonic acid (JA) are important plant hormones in response to drought stress. We have identified that ZmHsf28 elevated ABA and JA accumulation to confer drought tolerance in maize; however, the underlying mechanism still remains elusive. The knockout line zmhsf28 is generated to confirm the positive role of ZmHsf28 in drought response. Multiple approaches are combined

Summary The barley disease Septoria Speckled Leaf Blotch, caused by the fungus Zymoseptoria passerinii, last appeared in North America in the early 2000s. Although rare in crops, field sampling of wild grasses in the Middle East revealed the disease persistence in wild barley. Identification of Z. passerinii in various wild barley species prompted us to examine genomic signatures of host specialization

SummaryGlobal demand for food may rise by 60% mid‐century. A central challenge is to meet this need using less land in a changing climate. Nearly all crop carbon is assimilated through Rubisco, which is catalytically slow, reactive with oxygen, and a major component of leaf nitrogen. Developing more efficient forms of Rubisco, or engineering CO2 concentrating mechanisms into C3 crops to competitively

Acquired thermotolerance (also known as priming) is the ability of cells or organisms to survive acute heat stress if preceded by a milder one. In plants, acquired thermotolerance has been studied mainly at the transcriptional level, including recent descriptions of sophisticated regulatory circuits that are essential for this learning capacity. Here, we tested the involvement of polysome-related processes

Understanding root development is critical for enhancing plant growth and health, and advanced technologies are essential for unraveling the complexities of these processes. In this review, we highlight select technological innovations in the study of root development, with a focus on the transformative impact of single-cell gene expression analysis. We provide a high-level overview of recent advancements

Potato (Solanum tuberosum L.) is one of the most important food crops globally and is especially vulnerable to heat stress. However, substantial knowledge gaps remain in our understanding of the developmental mechanisms associated with tuber responses to heat stress. This study used whole-plant physiology, transcriptomics, and phytohormone profiling to elucidate how heat stress affects potato tuber

SummaryTiller is an important factor in determining rice yield. Currently, researches mainly focus on the outgrowth of low‐order tiller (LOT), while the regulation mechanism of high‐order tiller (HOT) outgrowth has remained unknown. In this study, we detected one OsNL1 mutant, nl1, exhibiting HOT numbers increase, and found that OsNL1 interacts with OsTOPLESS2, which was mediated by the core motif

Flavonoids play critical roles in plant adaptation to environmental changes and are valuable medicinal resources (Chagas et al., 2022). Flavonoids are predominantly found in glycosylated forms, which exhibit increased structural complexity, solubility and stability. However, the aglycone forms of flavonoids exhibit greater antioxidant capacity and bioavailability (Xie et al., 2022). Enhancing the content

Summary Changes in chromosome numbers are a prominent driver of plant evolution, impacting ecological diversification, stress tolerance, and phenotypes. ChromEvol is a widely used software tool for deciphering patterns of chromosome‐number change along a phylogeny of interest. It evaluates the fit of alternative models to the data, estimates transition rates of different types of events, and infers

Carboxysomes are anabolic bacterial microcompartments that play an essential role in CO2 fixation in cyanobacteria. This self-assembling proteinaceous organelle uses a polyhedral shell constructed by hundreds of shell protein paralogs to encapsulate the key CO2-fixing enzymes Rubisco and carbonic anhydrase. Deciphering the precise arrangement and structural organization of Rubisco enzymes within carboxysomes

Hexoses are essential for plant growth and fruit development. However, the precise roles of hexose/H+ symporters in postphloem sugar transport and cellular sugar homeostasis in rapidly growing fruits remain elusive. To elucidate the functions of hexose/H+ symporters in cucumber (Cucumis sativus L.) fruits, we conducted comprehensive analyses of their tissue-specific expression, localization, transport

Summary Tropical cyclones (TCs) sporadically cause extensive damage to forests. However, little is known about how TCs affect forest dynamics in mountainous terrain, due to difficulties in modelling wind flows and quantifying structural changes. Typhoon Mangkhut (2018) was the strongest TC to strike Hong Kong in over 40 yr, with gusts > 250 km h−1. Remarkably, the event was captured by a dense anemometer

There has been widespread interest in developing trait-based models to predict photosynthetic capacity from leaves to ecosystems (Walker et al., 2014; Xu & Trugman, 2021), but comparably less for nonphotorespiratory mitochondrial CO2 release (dark respiration, Rdark). This is significant, given that about half of the CO2 released from plants is via Rdark – which occurs day and night – and supports

Summary During periods of stomatal closure, such as drought, plant leaves continue to lose water at a rate determined by the minimum leaf conductance, gmin. Although gmin varies with temperature, less is known about what drives this variation, including how the pathways of water loss (cuticle or stomata) vary with temperature. We used gas exchange and bench drying methods to measure gmin and cuticular

Summary Plant height is a critical agronomic trait that affects crop yield, plant architecture, and environmental adaptability. Gibberellins (GAs) regulate plant height, with DELLA proteins acting as key repressors in the GA signaling pathway by inhibiting GA‐induced growth. While DELLA phosphorylation is essential for regulating plant height, the precise mechanisms underlying this process remain incompletely

New Phytologist 244 (2024), 1408–1421, doi: 10.1111/nph.20153 Since its publication, the authors of El Arbi et al. (2024) have identified that under the heading ‘RNA extraction, strand-specific RNA sequencing and data analysis’, the text ‘MRNA sequences were aligned with Salmon (v.0.14.2) (Patro et al., 2017) to the A. thaliana Reference Transcript Dataset 2 (Zhang et al., 2017)’ should read ‘MRNA

The negative impacts of drought on plant productivity and survival in natural and crop systems are increasing with global heating, yet our capacity to identify species capable of surviving drought remains limited. Here, we tested the use of a mixed-planting approach for assessing differences in seedling drought tolerance. To homogenize dehydration rates, we grew seedlings of 10 species of Eucalyptus

Over the past years, plant hypoxia research has produced a considerable number of new resources to monitor low oxygen responses in model species, mainly Arabidopsis thaliana. Climate change urges the development of effective genetic strategies aimed at improving plant resilience during flooding events. This need pushes forward the search for optimized tools that can reveal the actual oxygen available

Kiwifruit (Actinidia chinensis), a recently commercialized horticultural crop, is rich in various nutrient compounds. However, the regulatory networks controlling the dynamic changes in key metabolites among different tissues remain largely unknown. Here, high-resolution spatiotemporal datasets obtained by ultraperformance liquid chromatography-tandem mass spectrometry methodology and RNA-seq were

SummaryChicoric acid, a phenolic compound derived from plants, exhibits a range of pharmacological activities. Light significantly influences the chicoric acid biosynthesis in Taraxacum mongolicum; however, the transcriptional regulatory network governing this process remains unclear. A combined analysis of the metabolome and transcriptome revealed that blue light markedly enhances chicoric acid accumulation

Summary There is an increasing demand to boost photosynthesis in rice to increase yield potential. Chloroplasts are the site of photosynthesis, and increasing their number and size is a potential route to elevate photosynthetic activity. Notably, bundle sheath cells do not make a significant contribution to overall carbon fixation in rice, and thus, various attempts are being made to increase chloroplast

Summary Passion flower extrafloral nectaries (EFNs) protrude from leaves and facilitate mutualistic interactions with insects; however, how age cues control EFN growth remains poorly understood. Here, we examined leaf and EFN morphology and development of two Passiflora species with distinct leaf shapes, and compared the phenotype of these to transgenics with manipulated activity of the age‐dependent

SummaryOstrinia furnacalis (O. furnacalis) is a commonly occurring agricultural pest that can severely impact corn yield and quality. Therefore, establishing and implementing effective control methods against O. furnacalis are of great significance. Chemical insecticides remain the most effective means to mitigate the damage caused by O. furnacalis. With the increasing resistance of O. furnacalis to

Carbohydrate-based cell wall signaling impacts plant growth, development, and stress responses; however, how cell wall signals are perceived and transduced remains poorly understood. Several cell wall breakdown products have been described as typical damage-associated molecular patterns that activate plant immunity, including pectin-derived oligogalacturonides (OGs). Receptor kinases of the WALL-ASSOCIATED

Nitrogen is essential for plant growth and development. SNF1-related protein kinase 1 (SnRK1) is an evolutionarily conserved protein kinase pivotal for regulating plant responses to nutrient deficiency. Here, we discovered that the expression and activity of the SnRK1 α-catalytic subunit (SnRK1α1) increased in response to low-nitrogen stress. SnRK1α1 overexpression enhanced seedling tolerance, nitrate

Starch is an indispensable energy reserve for pollen and failure of starch biosynthesis in pollen leads to male sterility in flowering crops. Nonetheless, the regulatory mechanisms underlying starch biosynthesis in rice (Oryza sativa) pollen remain unclear. Here, we identified a target of the microRNA OsmiR159, SPOROCYTELESS ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR-ASSOCIATED AMPHIPHILIC-REPRESSION

Well-conserved mitogen-activated protein kinase (MAPK) cascades are essential for orchestrating of a wide range of cellular processes in plants, including defense responses against pathogen attack. NAC transcription factors play important roles in plant immunity, but their targets and how they are regulated remain largely unknown. Here, we identified the transcription factor OsNAC29 as a key component

The Arabidopsis (Arabidopsis thaliana) yellow variegated2 (var2) mutant, lacking functional FILAMENTATION TEMPERATURE-SENSITIVE H2 (FtsH2), an ATP-dependent zinc metalloprotease, is a powerful tool for studying the photosystem II (PSII) repair process in plants. FtsH2, forming hetero-hexamers with FtsH1, FtsH5, and FtsH8, plays an indispensable role in PSII proteostasis. Although abiotic stresses like

Xylan, a pivotal polymer with diversified structures, is indispensable for cell wall integrity and contributes to plant growth and biomass recalcitrance. Xylan is synthesized by multi-enzyme complexes named xylan synthase complexes (XSCs). However, the biochemical mechanism of XSCs and the functions of core components within XSC remain unclear. Here, we report that rice (Oryza sativa) XYLAN O-ACETYLTRANSFERASE

Summary Nitrogen (N) uptake by plant roots from soil is the largest flux within the terrestrial N cycle. Despite its significance, a comprehensive analysis of plant uptake for inorganic and organic N forms across grasslands is lacking. Here we measured in situ plant uptake of 13 inorganic and organic N forms by dominant species along a 3000 km transect spanning temperate and alpine grasslands. To generalize