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Microbes produce biofilms to support their communities in nutrient-limited environments Nat. Microbiol. (IF 20.5) Pub Date : 2024-07-01 Isis Del Mazo-Monsalvo, Michel Geovanni Santiago-Martínez
Biofilms are complex extracellular structures formed by microbes (bacteria, archaea, protists, fungi and microalgae), usually as a response to stress induced by fluctuating factors in their environment1. However, microbes also naturally form biofilms to facilitate their interactions with other microbes, their environment and their hosts. Biofilms are generally composed of extracellular DNA, complex
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Methanotrophic Methanoperedens archaea host diverse and interacting extrachromosomal elements Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-25 Ling-Dong Shi, Jacob West-Roberts, Marie C. Schoelmerich, Petar I. Penev, LinXing Chen, Yuki Amano, Shufei Lei, Rohan Sachdeva, Jillian F. Banfield
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Dietary fibre directs microbial tryptophan metabolism via metabolic interactions in the gut microbiota Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-25 Anurag K. Sinha, Martin F. Laursen, Julius E. Brinck, Morten L. Rybtke, Anna Pii Hjørne, Nicola Procházková, Mikael Pedersen, Henrik M. Roager, Tine R. Licht
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Molecular plasticity of herpesvirus nuclear egress analysed in situ Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-25 Vojtěch Pražák, Yuliia Mironova, Daven Vasishtan, Christoph Hagen, Ulrike Laugks, Yannick Jensen, Saskia Sanders, John M. Heumann, Jens B. Bosse, Barbara G. Klupp, Thomas C. Mettenleiter, Michael Grange, Kay Grünewald
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Spatial mapping of mobile genetic elements and their bacterial hosts in complex microbiomes Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-25 Benjamin Grodner, Hao Shi, Owen Farchione, Albert C. Vill, Ioannis Ntekas, Peter J. Diebold, David T. Wu, Chia-Yu Chen, David M. Kim, Warren R. Zipfel, Ilana L. Brito, Iwijn De Vlaminck
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Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-24 Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe, Thomas Gurry, Noa Rappaport, Erin M. Ostrem, Ophelia S. Venturelli, Christian Diener, Sean M. Gibbons
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A multi-kingdom collection of 33,804 reference genomes for the human vaginal microbiome Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-21 Liansha Huang, Ruochun Guo, Shenghui Li, Xiaoling Wu, Yue Zhang, Shumin Guo, Ying Lv, Zhen Xiao, Jian Kang, Jinxin Meng, Peng Zhou, Jie Ma, Wei You, Yan Zhang, Hailong Yu, Jixin Zhao, Guangrong Huang, Zuzhen Duan, Qiulong Yan, Wen Sun
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Interactions between diet and gut microbiota in cancer Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-21 Geicho Nakatsu, Natalia Andreeva, Meghan H. MacDonald, Wendy S. Garrett
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Maternal antibody level, sex and birth route drive individual measles immunity differences Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-20
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A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-20 Emily B. Graham, Antonio Pedro Camargo, Ruonan Wu, Russell Y. Neches, Matt Nolan, David Paez-Espino, Nikos C. Kyrpides, Janet K. Jansson, Jason E. McDermott, Kirsten S. Hofmockel
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Pan-drug resistance and hypervirulence in a human fungal pathogen are enabled by mutagenesis induced by mammalian body temperature Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-19 Jingjing Huang, Pengjie Hu, Leixin Ye, Zhenghao Shen, Xinfei Chen, Fang Liu, Yuyan Xie, Jinhan Yu, Xin Fan, Meng Xiao, Clement K. M. Tsui, Weiping Wang, Yingxing Li, Ge Zhang, Koon Ho Wong, Lei Cai, Feng-yan Bai, Yingchun Xu, Linqi Wang
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Engineering plasmid copy number heterogeneity for dynamic microbial adaptation Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-18 Shalni Kumar, Andrew Lezia, Jeff Hasty
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Immune imprinting in early life shapes cross-reactivity to influenza B virus haemagglutinin Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-18 Peta Edler, Lara S. U. Schwab, Malet Aban, Michelle Wille, Natalie Spirason, Yi-Mo Deng, Michael A. Carlock, Ted M. Ross, Jennifer A. Juno, Steve Rockman, Adam K. Wheatley, Stephen J. Kent, Ian G. Barr, David J. Price, Marios Koutsakos
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A soybean cyst nematode suppresses microbial plant symbionts using a lipochitooligosaccharide-hydrolysing enzyme Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-17 Wei Chen, Di Wang, Shaoyong Ke, Yangrong Cao, Wensheng Xiang, Xiaoli Guo, Qing Yang
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Bacteriophage protein Dap1 regulates evasion of antiphage immunity and Pseudomonas aeruginosa virulence impacting phage therapy in mice Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-17 Shuai Le, Leilei Wei, Jing Wang, Fang Tian, Qian Yang, Jingru Zhao, Zhuojun Zhong, Jiazhen Liu, Xuesong He, Qiu Zhong, Shuguang Lu, Haihua Liang
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GprC of the nematode-trapping fungus Arthrobotrys flagrans activates mitochondria and reprograms fungal cells for nematode hunting Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-14 Xiaodi Hu, David S. Hoffmann, Mai Wang, Lars Schuhmacher, Maria C. Stroe, Birgit Schreckenberger, Marcus Elstner, Reinhard Fischer
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Chromosomal integration of the pSOL1 megaplasmid of Clostridium acetobutylicum for continuous and stable advanced biofuels production Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-14 Muhammad Ehsaan, Minyeong Yoo, Wouter Kuit, Céline Foulquier, Philippe Soucaille, Nigel P. Minton
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Single-cell transcriptomics across 2,534 microbial species reveals functional heterogeneity in the rumen microbiome Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-12 Minghui Jia, Senlin Zhu, Ming-Yuan Xue, Hongyi Chen, Jinghong Xu, Mengdi Song, Yifan Tang, Xiaohan Liu, Ye Tao, Tianyu Zhang, Jian-Xin Liu, Yongcheng Wang, Hui-Zeng Sun
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The human microbiome and immune response shift during spaceflight Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-11
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Klebsiella oxytoca inhibits Salmonella infection through multiple microbiota-context-dependent mechanisms Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-11 Lisa Osbelt, Éva d. H. Almási, Marie Wende, Sabine Kienesberger, Alexander Voltz, Till R. Lesker, Uthayakumar Muthukumarasamy, Nele Knischewski, Elke Nordmann, Agata A. Bielecka, María Giralt-Zúñiga, Eugen Kaganovitch, Caroline Kühne, Claas Baier, Michael Pietsch, Mathias Müsken, Marina C. Greweling-Pils, Rolf Breinbauer, Antje Flieger, Dirk Schlüter, Rolf Müller, Marc Erhardt, Ellen L. Zechner, Till
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Alternative dimethylsulfoniopropionate biosynthesis enzymes in diverse and abundant microorganisms Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-11 Jinyan Wang, Andrew R. J. Curson, Shun Zhou, Ornella Carrión, Ji Liu, Ana R. Vieira, Keanu S. Walsham, Serena Monaco, Chun-Yang Li, Qing-Yu Dong, Yu Wang, Peter Paolo L. Rivera, Xiao-Di Wang, Min Zhang, Libby Hanwell, Matthew Wallace, Xiao-Yu Zhu, Pedro N. Leão, David J. Lea-Smith, Yu-Zhong Zhang, Xiao-Hua Zhang, Jonathan D. Todd
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Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-11 Braden T. Tierney, JangKeun Kim, Eliah G. Overbey, Krista A. Ryon, Jonathan Foox, Maria A. Sierra, Chandrima Bhattacharya, Namita Damle, Deena Najjar, Jiwoon Park, J. Sebastian Garcia Medina, Nadia Houerbi, Cem Meydan, Jeremy Wain Hirschberg, Jake Qiu, Ashley S. Kleinman, Gabriel A. Al-Ghalith, Matthew MacKay, Evan E. Afshin, Raja Dhir, Joseph Borg, Christine Gatt, Nicholas Brereton, Benjamin P. Readhead
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Functional and structural basis of human parainfluenza virus type 3 neutralization with human monoclonal antibodies Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-10 Naveenchandra Suryadevara, Ana Rita Otrelo-Cardoso, Nurgun Kose, Yao-Xiong Hu, Elad Binshtein, Rachael M. Wolters, Alexander L. Greninger, Laura S. Handal, Robert H. Carnahan, Anne Moscona, Theodore S. Jardetzky, James E. Crowe
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Pseudomonas aeruginosa breaches respiratory epithelia through goblet cell invasion in a microtissue model Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-10 A. Leoni Swart, Benoît-Joseph Laventie, Rosmarie Sütterlin, Tina Junne, Luisa Lauer, Pablo Manfredi, Sandro Jakonia, Xiao Yu, Evdoxia Karagkiozi, Rusudan Okujava, Urs Jenal
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Phytate metabolism is mediated by microbial cross-feeding in the gut microbiota Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-10 Willem M. De Vos, Minh Nguyen Trung, Mark Davids, Guizhen Liu, Melany Rios-Morales, Henning Jessen, Dorothea Fiedler, Max Nieuwdorp, Thi Phuong Nam Bui
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Influenza virus uses mGluR2 as an endocytic receptor to enter cells Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-07 Zixin Ni, Jinliang Wang, Xiaofei Yu, Yifan Wang, Jingfei Wang, Xijun He, Chengjun Li, Guohua Deng, Jianzhong Shi, Huihui Kong, Yongping Jiang, Pucheng Chen, Xianying Zeng, Guobin Tian, Hualan Chen, Zhigao Bu
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Yersinia infection induces glucose depletion and AMPK-dependent inhibition of pyroptosis in mice Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-06 Yuanxin Yang, Hongwen Fang, Zhangdan Xie, Fandong Ren, Lingjie Yan, Mengmeng Zhang, Guifang Xu, Ziwen Song, Zezhao Chen, Weimin Sun, Bing Shan, Zheng-Jiang Zhu, Daichao Xu
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Advocating for phage therapy Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-05
As antibiotic-resistant infections continue to rise globally, the development and application of phage therapy represents not only a promising but also a mandatory alternative approach to tackle this major public-health threat.
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Co-expression analysis reveals distinct alliances around two carbon fixation pathways in hydrothermal vent symbionts Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-05 Jessica H. Mitchell, Adam H. Freedman, Jennifer A. Delaney, Peter R. Girguis
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mRNA-encoded Cas13 can be used to treat dengue infections in mice Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-05 Mausumi Basu, Chiara Zurla, Tabassum T. Auroni, Daryll Vanover, Lorena C. S. Chaves, Heena Sadhwani, Heather Pathak, Rahul Basu, Jared P. Beyersdorf, Oluwatomi O. Amuda, Amany Elsharkawy, Varun Mosur, Robert A. Arthur, Henry Claussen, Loren E. Sasser, Jay A. Wroe, Hannah E. Peck, Mukesh Kumar, Margo A. Brinton, Philip J. Santangelo
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Personalized bacteriophage therapy for difficult-to-treat infections Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-04 Jonathan Iredell, Holly Sinclair, Ameneh Khatami
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Personalized bacteriophage therapy outcomes for 100 consecutive cases: a multicentre, multinational, retrospective observational study Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-04 Jean-Paul Pirnay, Sarah Djebara, Griet Steurs, Johann Griselain, Christel Cochez, Steven De Soir, Tea Glonti, An Spiessens, Emily Vanden Berghe, Sabrina Green, Jeroen Wagemans, Cédric Lood, Eddie Schrevens, Nina Chanishvili, Mzia Kutateladze, Mathieu de Jode, Pieter-Jan Ceyssens, Jean-Pierre Draye, Gilbert Verbeken, Daniel De Vos, Thomas Rose, Jolien Onsea, Brieuc Van Nieuwenhuyse, Patrick Soentjens
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A Marine Group A isolate relies on other growing bacteria for cell wall formation Nat. Microbiol. (IF 20.5) Pub Date : 2024-06-03 Taiki Katayama, Masaru K. Nobu, Hiroyuki Imachi, Naoki Hosogi, Xian-Ying Meng, Kana Morinaga, Hideyoshi Yoshioka, Hiroshi A. Takahashi, Yoichi Kamagata, Hideyuki Tamaki
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Talented microbes unlatch peatland carbon Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-28 Gina Chaput, Maggie Sogin
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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-28 Bridget B. McGivern, Dylan R. Cronin, Jared B. Ellenbogen, Mikayla A. Borton, Eleanor L. Knutson, Viviana Freire-Zapata, John A. Bouranis, Lukas Bernhardt, Alma I. Hernandez, Rory M. Flynn, Reed Woyda, Alexandra B. Cory, Rachel M. Wilson, Jeffrey P. Chanton, Ben J. Woodcroft, Jessica G. Ernakovich, Malak M. Tfaily, Matthew B. Sullivan, Gene W. Tyson, Virginia I. Rich, Ann E. Hagerman, Kelly C. Wrighton
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Mycobacterium tuberculosis produces d-serine under hypoxia to limit CD8+ T cell-dependent immunity in mice Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-28 Hongyu Cheng, Zhe Ji, Yang Wang, Shenzhi Li, Tianqi Tang, Fei Wang, Cheng Peng, Xiangyang Wu, Yuanna Cheng, Zhonghua Liu, Mingtong Ma, Jie Wang, Xiaochen Huang, Lin Wang, Lianhua Qin, Haipeng Liu, Jianxia Chen, Ruijuan Zheng, Carl G. Feng, Xia Cai, Di Qu, Lilin Ye, Hua Yang, Baoxue Ge
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Multiple sclerosis patient-derived spontaneous B cells have distinct EBV and host gene expression profiles in active disease Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-28 Samantha S. Soldan, Chenhe Su, Maria Chiara Monaco, Leena Yoon, Toshitha Kannan, Urvi Zankharia, Rishi J. Patel, Jayaraju Dheekollu, Olga Vladimirova, Jack W. Dowling, Simon Thebault, Natalie Brown, Annaliese Clauze, Frances Andrada, Andries Feder, Paul J. Planet, Andrew Kossenkov, Daniel E. Schäffer, Joan Ohayon, Noam Auslander, Steven Jacobson, Paul M. Lieberman
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Self-assembling viral histones are evolutionary intermediates between archaeal and eukaryotic nucleosomes Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-28 Nicholas A. T. Irwin, Thomas A. Richards
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Host defence peptide plectasin targets bacterial cell wall precursor lipid II by a calcium-sensitive supramolecular mechanism Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-23 Shehrazade Jekhmane, Maik G. N. Derks, Sourav Maity, Cornelis J. Slingerland, Kamaleddin H. M. E. Tehrani, João Medeiros-Silva, Vicky Charitou, Danique Ammerlaan, Céline Fetz, Naomi A. Consoli, Rachel V. K. Cochrane, Eilidh J. Matheson, Mick van der Weijde, Barend O. W. Elenbaas, Francesca Lavore, Ruud Cox, Joseph H. Lorent, Marc Baldus, Markus Künzler, Moreno Lelli, Stephen A. Cochrane, Nathaniel
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Molecular insights into the Ebola virus life cycle Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-23 Bianca S. Bodmer, Thomas Hoenen, Lisa Wendt
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Understanding pathogen emergence through the lens of Candida auris Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-21 Teresa R. O’Meara
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Author Correction: A functional selection reveals previously undetected anti-phage defence systems in the E. coli pangenome Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-20 Christopher N. Vassallo, Christopher R. Doering, Megan L. Littlehale, Gabriella I. C. Teodoro, Michael T. Laub
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Peptostreptococcus anaerobius mediates anti-PD1 therapy resistance and exacerbates colorectal cancer via myeloid-derived suppressor cells in mice Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-15 Yali Liu, Chi Chun Wong, Yanqiang Ding, Mengxue Gao, Jun Wen, Harry Cheuk-Hay Lau, Alvin Ho-Kwan Cheung, Dan Huang, He Huang, Jun Yu
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Microbial dark matter could add uncertainties to metagenomic trait estimations Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-13 Ernest D. Osburn, Steven G. McBride, Michael S. Strickland
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Reply to: Microbial dark matter could add uncertainties to metagenomic trait estimations Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-13 Gabin Piton, Steven D. Allison, Mohammad Bahram, Falk Hildebrand, Jennifer B. H. Martiny, Kathleen K. Treseder, Adam C. Martiny
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Dynamics of measles immunity from birth and following vaccination Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-13 Wei Wang, Megan O’Driscoll, Qianli Wang, Sihong Zhao, Henrik Salje, Hongjie Yu
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Propionate prevents loss of the PDIM virulence lipid in Mycobacterium tuberculosis Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-13 Claire V. Mulholland, Thomas J. Wiggins, Jinhua Cui, Catherine Vilchèze, Saranathan Rajagopalan, Michael W. Shultis, Esmeralda Z. Reyes-Fernández, William R. Jacobs, Michael Berney
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Understanding the biology of monkeypox virus to prevent future outbreaks Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-09 Bernard Moss
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Considering the host in host–pathogen interactions Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-07
Studying the host response to infection advances our biological and evolutionary understanding, while broadening our capacity to prevent and mitigate infectious diseases.
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Metagenomics to improve infectious disease diagnostics in low- and middle-income countries Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-07 Abdullahi Jamiu, Chrispin Chaguza
Infectious diseases cause a substantial global disease burden and mortality despite advances in medical interventions and improved access to healthcare. Low- and middle-income countries (LMICs), including countries in sub-Saharan Africa and Asia, are particularly affected by infectious diseases1. Moreover, it is widely postulated that the actual infectious disease burden in LMICs is underestimated
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MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-07 Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D’Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J. Henshaw, Wei E. Huang, Ievgeniia Iermak, Natalia P. Ivleva, Janina
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Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes Nat. Microbiol. (IF 20.5) Pub Date : 2024-05-02 Chen Liao, Thierry Rolling, Ana Djukovic, Teng Fei, Vishwas Mishra, Hongbin Liu, Chloe Lindberg, Lei Dai, Bing Zhai, Jonathan U. Peled, Marcel R. M. van den Brink, Tobias M. Hohl, Joao B. Xavier
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Author Correction: A dual-targeting antifungal is effective against multidrug-resistant human fungal pathogens Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-30 Min Zhou, Longqiang Liu, Zihao Cong, Weinan Jiang, Ximian Xiao, Jiayang Xie, Zhengjie Luo, Sheng Chen, Yueming Wu, Xinying Xue, Ning Shao, Runhui Liu
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Gut microorganism enzymes unlock universal blood Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-29 Timothy J. Satchwell, Natalie Di Bartolo, Ashley M. Toye
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Akkermansia muciniphila exoglycosidases target extended blood group antigens to generate ABO-universal blood Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-29 Mathias Jensen, Linn Stenfelt, Jennifer Ricci Hagman, Michael Jakob Pichler, Julia Weikum, Tine Sofie Nielsen, Annika Hult, Jens Preben Morth, Martin L. Olsson, Maher Abou Hachem
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Exceeding expectations out in the cold with Colwellia Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-26 Jody W. Deming
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Rethinking the burden of latent tuberculosis to reprioritize research Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-26 Marcel A. Behr, Paul H. Edelstein, Lalita Ramakrishnan
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Age and sex influence antibody profiles associated with tuberculosis progression Nat. Microbiol. (IF 20.5) Pub Date : 2024-04-24 Leela R. L. Davies, Chuangqi Wang, Pia Steigler, Kathryn A. Bowman, Stephanie Fischinger, Mark Hatherill, Michelle Fisher, Stanley Kimbung Mbandi, Miguel Rodo, Tom H. M. Ottenhoff, Hazel M. Dockrell, Jayne S. Sutherland, Harriet Mayanja-Kizza, W. Henry Boom, Gerhard Walzl, Stefan H. E. Kaufmann, Elisa Nemes, Thomas J. Scriba, Douglas Lauffenburger, Galit Alter, Sarah M. Fortune
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