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Editor’s pick: Gate Bioscience Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-20
Each year, Nature Biotechnology highlights companies that have received sizeable early-stage funding in the previous year. Gate Bioscience wants to tailor gates that stop problematic proteins at the source.
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Author Correction: Precision targeting of autoantigen-specific B cells in muscle-specific tyrosine kinase myasthenia gravis with chimeric autoantibody receptor T cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-14 Sangwook Oh, Xuming Mao, Silvio Manfredo-Vieira, Jinmin Lee, Darshil Patel, Eun Jung Choi, Andrea Alvarado, Ebony Cottman-Thomas, Damian Maseda, Patricia Y. Tsao, Christoph T. Ellebrecht, Sami L. Khella, David P. Richman, Kevin C. O’Connor, Uri Herzberg, Gwendolyn K. Binder, Michael C. Milone, Samik Basu, Aimee S. Payne
Correction to: Nature Biotechnology https://doi.org/10.1038/s41587-022-01637-z, published online 19 January 2023.
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Directed evolution of engineered virus-like particles with improved production and transduction efficiencies Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-13 Aditya Raguram, Meirui An, Paul Z. Chen, David R. Liu
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Biotech news from around the world Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
Wageningen-based agbiotech KeyGene, in collaboration with Chiquita and Wageningen University, develops a banana plant resistant to both Fusarium tropical race 4 (TR4), a fungus capable of devastating entire plantations, and black sigatoka, a widespread leaf disease. The new variety, named Yelloway One, was produced by combining traditional crossbreeding techniques and modern DNA analysis technology
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A bacterial neoantigen cancer vaccine Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Iris Marchal
Neoantigen cancer vaccines hold great promise for cancer treatment but are often limited by the immunosuppressive tumor environment. Now, as described in Nature, Redenti et al. have overcome this issue by harnessing the natural capacity of bacteria to colonize tumors and trigger immune responses. They have developed a microbial system that produces and delivers distinct sets of neoantigens to elicit
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First proof-of-mechanism for RNA editing in humans Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
The first clinical results for an RNA-editing oligonucleotide designed to correct a disease-causing single-base mutation in mRNA have been released. The company, Wave Life Sciences, says the agent WVE-006 restored more than 60% of wild-type functional protein in two individuals with the genetic disorder alpha-1 antitrypsin (ATT; encoded by SERPINA1) deficiency. ATT deficiency affects the liver owing
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Shot in the arm for biotech fuels Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
The US Department of Energy (DOE) in October conditionally committed nearly $3 billion to two companies to scale up the production of sustainable jet fuel made from crops, vegetable oils and animal fats. Gevo in Englewood, Colorado, could receive a loan guarantee of nearly $1.5 billion to build a new jet fuel refinery in Lake Preston, South Dakota. And Montana Renewables could receive about the same
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Cancer cases in bluebird’s gene therapy trials Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
Over 10% of patients with a fatal neurodegenerative disease who received bluebird bio’s FDA-approved gene therapy Skysona (elivaldogene autotemcel) have developed hematological cancers, further highlighting the well-known risks of using lentiviral vectors. The patients were treated with Skysona to slow the progression of cerebral adrenoleukodystrophy (CALD), an X-linked rare inherited neurodegenerative
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From Bench to Podcast: Ali Shaib Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
In this episode, Associate Editor Cláudia Vilhena sits down with Ali Shaib, the lead author of an exciting new study showcasing expansion microscopy and the visualization of individual protein shapes using standard laboratory microscopes. Tune in as Ali and Cláudia explore the “accidental” origins of the study, the importance of mentorship and collaboration, and the democratization of super-resolution
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Wasp gut microbes yield beer with extra tang Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
Beer lovers can now enjoy their wildest drink yet thanks to a yeast carried by wasps. AB Biotek from Peterborough in the UK has launched Pinnacle Crisp Sour — a brewer’s ingredient made from Lachancea thermotolerans, a yeast found in the bellies of wasps. Traditional beer uses just four ingredients: grain, hops, yeast and water. Hops add the distinctive bitter flavor, and yeast converts sugar from
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Virus-like elements Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
Recent patents relating to retroviruses, transposons and other virus-like elements for use in gene transfer and gene therapy.
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LucaProt reveals the diverse global RNA virome Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Iris Marchal
RNA viruses are omnipresent and can infect a wide range of hosts. Recent efforts to sequence ecological samples have identified tens of thousands of new species, yet uncovering the complete spectrum of RNA virus diversity remains challenging. In a new paper published in Cell, Hou et al. describe a deep learning algorithm, called LucaProt, to advance RNA virus discovery at global scale. LucaProt is
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Glucose-responsive insulin for diabetes Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Iris Marchal
Using insulin to control diabetes can lead to dangerously low blood glucose levels (hypoglycemia). For many years, researchers have worked to engineer an insulin that avoids this risk by adjusting its activity in response to glucose, but so far without success. Writing in Nature, Hoeg-Jensen et al. describe an insulin with a glucose-sensitive switch that reversibly responds to ambient glucose levels
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12
Recent moves of note in and around the biotech and pharma industries.
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Who made the mRNA vaccine? Measuring division of labor in therapeutic innovation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Martin Ho, Henry C. W. Price, Tim S. Evans, Eoin O’Sullivan
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Behind the graduate mental health crisis in science Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Carly A. Busch, Nicholas J. Wiesenthal, Logan E. Gin, Katelyn M. Cooper
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Multimodal scanning of genetic variants with base and prime editing Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Olivier Belli, Kyriaki Karava, Rick Farouni, Randall J. Platt
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Beyond the blood: expanding CAR T cell therapy to solid tumors Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Ugur Uslu, Carl H. June
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Saturation profiling of drug-resistant genetic variants using prime editing Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-12 Younggwang Kim, Hyeong-Cheol Oh, Seungho Lee, Hyongbum Henry Kim
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Amyloid is everywhere, but new treatments could stop the toxic build up Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-11
Amyloid deposits are present in the brains of cognitively impaired individuals, but also accumulate throughout the body. Some biotechs aim to keep these misfolded proteins in check to treat a range of diseases, including heart failure, ALS and Alzheimer’s disease.
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Italy tests first gene-edited vines for winemaking Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-06
Europe’s first field trial of gene-edited vines began in northern Italy on 30 September 2024. Developed by EdiVite, a spinoff from the University of Verona, these Chardonnay vines have undergone gene inactivation to enable them to better defend themselves against downy mildew, a major fungal disease. The trial is being conducted on university land, with plans to expand to another site in the Veneto
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CRISPR Nobelists surrender their own European patents Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-04
A strategic move by lawyers acting for Doudna and Charpentier is the latest twist in the battleground for CRISPR–Cas9 technology.
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Ancient and versatile CRISPR–Cas nuclease created with ancestral sequence reconstruction Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-05
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What will it take to get miRNA therapies to market? Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-04
The Nobel Prize in medicine was awarded for the discovery of miRNA, but miRNA therapeutics have a long way to go before they outcompete other therapies.
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AIntibody: an experimentally validated in silico antibody discovery design challenge Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-04 M. Frank Erasmus, Laura Spector, Fortunato Ferrara, Roberto DiNiro, Thomas J. Pohl, Katheryn Perea-Schmittle, Wei Wang, Peter M. Tessier, Crystal Richardson, Laure Turner, Sumit Kumar, Daniel Bedinger, Pietro Sormanni, Monica L. Fernández-Quintero, Andrew B. Ward, Johannes R. Loeffler, Olivia M. Swanson, Charlotte M. Deane, Matthew I. J. Raybould, Andreas Evers, Carolin Sellmann, Sharrol Bachas, Jeff
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Binary vector copy number engineering improves Agrobacterium-mediated transformation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-04 Matthew J. Szarzanowicz, Lucas M. Waldburger, Michael Busche, Gina M. Geiselman, Liam D. Kirkpatrick, Alexander J. Kehl, Claudine Tahmin, Rita C. Kuo, Joshua McCauley, Hamreet Pannu, Ruoming Cui, Shuying Liu, Nathan J. Hillson, Jacob O. Brunkard, Jay D. Keasling, John M. Gladden, Mitchell G. Thompson, Patrick M. Shih
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Site-specific drug release of monomethyl fumarate to treat oxidative stress disorders Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-04 Thomas D. Avery, Jiahe Li, Dion J. L. Turner, Mohd S. U. Rasheed, Fisher R. Cherry, Damian L. Stachura, Fátima Rivera-Escalera, David M. Ruiz, Michael J. Lacagnina, Caitlyn M. Gaffney, Clarissa Aguilar, Jingxian Yu, Yang Wang, Huan Xie, Dong Liang, Andrew J. Shepherd, Andrew D. Abell, Peter M. Grace
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Development of compact transcriptional effectors using high-throughput measurements in diverse contexts Nat. Biotechnol. (IF 33.1) Pub Date : 2024-11-01 Josh Tycko, Mike V. Van, Aradhana, Nicole DelRosso, Hanrong Ye, David Yao, Raeline Valbuena, Alun Vaughan-Jackson, Xiaoshu Xu, Connor Ludwig, Kaitlyn Spees, Katherine Liu, Mingxin Gu, Venya Khare, Adi Xiyal Mukund, Peter H. Suzuki, Sophia Arana, Catherine Zhang, Peter P. Du, Thea S. Ornstein, Gaelen T. Hess, Roarke A. Kamber, Lei S. Qi, Ahmad S. Khalil, Lacramioara Bintu, Michael C. Bassik
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A resurrected ancestor of Cas12a expands target access and substrate recognition for nucleic acid editing and detection Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-31 Ylenia Jabalera, Igor Tascón, Sara Samperio, Jorge P. López-Alonso, Monika Gonzalez-Lopez, Ana M. Aransay, Guillermo Abascal-Palacios, Chase L. Beisel, Iban Ubarretxena-Belandia, Raul Perez-Jimenez
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Comprehensive genome analysis and variant detection at scale using DRAGEN Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-25 Sairam Behera, Severine Catreux, Massimiliano Rossi, Sean Truong, Zhuoyi Huang, Michael Ruehle, Arun Visvanath, Gavin Parnaby, Cooper Roddey, Vitor Onuchic, Andrea Finocchio, Daniel L. Cameron, Adam English, Shyamal Mehtalia, James Han, Rami Mehio, Fritz J. Sedlazeck
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A structurally informed human protein–protein interactome reveals proteome-wide perturbations caused by disease mutations Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-24 Dapeng Xiong, Yunguang Qiu, Junfei Zhao, Yadi Zhou, Dongjin Lee, Shobhita Gupta, Mateo Torres, Weiqiang Lu, Siqi Liang, Jin Joo Kang, Charis Eng, Joseph Loscalzo, Feixiong Cheng, Haiyuan Yu
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Gold-siRNA supraclusters enhance the anti-tumor immune response of stereotactic ablative radiotherapy at primary and metastatic tumors Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-24 Yuyan Jiang, Hongbin Cao, Huaping Deng, Li Guan, Jimpi Langthasa, Deana Rae Crystal Colburg, Stavros Melemenidis, Renee M. Cotton, John Aleman, Xiao-Jing Wang, Edward E. Graves, Anusha Kalbasi, Kanyi Pu, Jianghong Rao, Quynh-Thu Le
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Pest control gets the CRISPR treatment Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-23
Precision genetic methods are enabling more efficient, environmentally friendly pest control methods for agricultural use as well as stopping the spread of disease.
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Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-18 Lei Chang, Yang Xie, Brett Taylor, Zhaoning Wang, Jiachen Sun, Ethan J. Armand, Shreya Mishra, Jie Xu, Melodi Tastemel, Audrey Lie, Zane A. Gibbs, Hannah S. Indralingam, Tuyet M. Tan, Rafael Bejar, Clark C. Chen, Frank B. Furnari, Ming Hu, Bing Ren
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Lung and liver editing by lipid nanoparticle delivery of a stable CRISPR–Cas9 ribonucleoprotein Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-16 Kai Chen, Hesong Han, Sheng Zhao, Bryant Xu, Boyan Yin, Atip Lawanprasert, Marena Trinidad, Benjamin W. Burgstone, Niren Murthy, Jennifer A. Doudna
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Global profiling of protein complex dynamics with an experimental library of protein interaction markers Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-16 Christian Dörig, Cathy Marulli, Thomas Peskett, Norbert Volkmar, Lorenzo Pantolini, Gabriel Studer, Camilla Paleari, Fabian Frommelt, Torsten Schwede, Natalie de Souza, Yves Barral, Paola Picotti
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A strategy to load, rethread and read protein sequences through a nanopore Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Iris Marchal
Understanding proteomic diversity at the molecular level is essential for advances in biology and medicine, but sequencing proteins in their full, native form remains challenging. A study in Nature by Motone et al. introduces a nanopore sequencing method that can read single, full-length protein molecules, enabling the detection of single amino acid substitutions and post-translational modifications
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Niemann–Pick double win Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
In one week, the US Food and Drug Administration approved two treatments for Niemann–Pick disease type C (NPC). One agent, Miplyffa (arimoclomol) from Zevra Therapeutics, is the first drug approved by FDA to treat neurologic symptoms associated with NPC, in combination with the enzyme inhibitor miglustat. The other is IntraBio’s Aqneursa (levacetylleucine), an oral modified amino acid (N-acetyl-l-leucine)
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T cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
Recent patents relating to the manufacture, preparation and use of T cells in treating cancer.
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Cellular shuttles put mislocalized proteins in their right place Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Iris Marchal
The misplacement of proteins within a cell can cause various diseases, but no therapeutic intervention can precisely control protein location. Writing in Nature, Ng et al. describe targeted relocalization-activating molecules (TRAMs) that couple misplaced proteins to cellular shuttles, relocating them to their proper places. Ng et al. began by testing a TRAM previously used to bring together two proteins
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Bispecific upstages Keytruda Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
The new bispecific drug ivonescimab has outperformed Merck’s blockbuster PD-1 checkpoint inhibitor Keytruda (pembrolizumab) in a head-to-head clinical trial of non-small-cell lung cancer. The dual-action VEGF–PD-1 antibody nearly doubled progression-free survival over the PD-1 blocker, according to phase 3 data presented by Summit Therapeutics at the World Conference on Lung Cancer in San Diego in
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Pan-KRAS destruction with a single PROTAC Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Iris Marchal
Most small-molecule drugs that target oncogenic Kirsten rat sarcoma virus (KRAS) mutants rely on interactions with variant-specific amino acid residues. However, a wide range of KRAS mutations are prevalent in human cancers, and undruggable variants pose a great challenge to the clinical treatment of KRAS-mutant tumors. In a paper published in Science, Popow et al. address this issue by designing a
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From Bench to Podcast: Chloe Fishman Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
Join us as Cláudia and Chloe touch bases on the advantages of this tool over existing methods, discuss the relevance of phage therapy to the fight against antimicrobial resistance and share their thoughts on the crucial role mentorship plays in empowering early career researchers. If you are interested in phage therapy and astrobiology, then this episode is for you!
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Biotech news from around the world Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
1. UNITED KINGDOM Merck opens a new research lab in London on the top floor of the Crick Institute in King’s Cross. As part of Merck’s growing presence in the UK, the lab will focus on preclinical development of neuroscience and immunology therapies. The new site builds on Merck’s $1.3 billion ten-story research center and UK headquarters, also in King’s Cross, scheduled to open in 2027.
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Editor’s pick: Switch Therapeutics Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
Each year, Nature Biotechnology highlights companies that have received sizeable early-stage funding in the previous year. Switch Therapeutics is rethinking cell-type specificity, building precision RNAi therapeutics for the brain.
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Five questions with Weixin Tang Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Michael Francisco
A chemist pioneering the discovery and engineering of CRISPR-derived gene-editing agents for medical adaptation talks about her scientific journey, the challenges of leading a lab and teaching undergraduates.
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14
Recent moves of note in and around the biotech and pharma industries.
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Accessible training for academic clinicians and researchers to address the need for academic entrepreneurs Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Victoria Bartek, Daria Ferro, Flaura Winston, Mark Kessel
A short course in the fundamentals of academic entrepreneurship is a feasible way to train scientists and physicians from varied backgrounds and experience.
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The European Innovation Council supports innovative portfolios in health biotech Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Iordanis Arzimanoglou
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The global patent landscape of functional food innovation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-14 Maima Matin, Dalibor Hrg, Olena Litvinova, Małgorzata Łysek-Gładysinska, Agnieszka Wierzbicka, Jarosław Olav Horbańczuk, Artur Jóźwik, Atanas G. Atanasov
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An antigen discovery pipeline integrates multi-omics data and informs immunotherapy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-11
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Model-directed generation of artificial CRISPR–Cas13a guide RNA sequences improves nucleic acid detection Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-11 Sreekar Mantena, Priya P. Pillai, Brittany A. Petros, Nicole L. Welch, Cameron Myhrvold, Pardis C. Sabeti, Hayden C. Metsky
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A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-11 Florian Huber, Marion Arnaud, Brian J. Stevenson, Justine Michaux, Fabrizio Benedetti, Jonathan Thevenet, Sara Bobisse, Johanna Chiffelle, Talita Gehert, Markus Müller, HuiSong Pak, Anne I. Krämer, Emma Ricart Altimiras, Julien Racle, Marie Taillandier-Coindard, Katja Muehlethaler, Aymeric Auger, Damien Saugy, Baptiste Murgues, Abdelkader Benyagoub, David Gfeller, Denarda Dangaj Laniti, Lana Kandalaft
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A community effort to optimize sequence-based deep learning models of gene regulation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-11 Abdul Muntakim Rafi, Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V. Kulakovskiy, Pablo Meyer, Carl G. de Boer
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One-step nanoscale expansion microscopy reveals individual protein shapes Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-09 Ali H. Shaib, Abed Alrahman Chouaib, Rajdeep Chowdhury, Jonas Altendorf, Daniel Mihaylov, Chi Zhang, Donatus Krah, Vanessa Imani, Russell K. W. Spencer, Svilen Veselinov Georgiev, Nikolaos Mougios, Mehar Monga, Sofiia Reshetniak, Tiago Mimoso, Han Chen, Parisa Fatehbasharzad, Dagmar Crzan, Kim-Ann Saal, Mohamad Mahdi Alawieh, Nadia Alawar, Janna Eilts, Jinyoung Kang, Alireza Soleimani, Marcus Müller
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A circularly permuted CasRx platform for efficient, site-specific RNA editing Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-09 Yuanming Wang, Kaiwen Ivy Liu, Mengying Mandy Liu, Kean Hean Ooi, Tram Anh Nguyen, Jiunn En Chee, Shun Xiang Danny Teo, Shan He, Jie Wen Douglas Tay, Seok Yee Teo, Kai Shin Liew, Xiao Yu Ge, Zhi Jian Ng, Hasmik Avagyan, Hao Liu, Zirong Yi, Keziah Chang, Eng Piew Louis Kok, Runjia Chen, Chun En Yau, Jun Wei Koh, Yue Wan, Meng How Tan
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Rapid species-level metagenome profiling and containment estimation with sylph Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-08 Jim Shaw, Yun William Yu
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Author Correction: The cost of drug patent expiration date errors Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-08 S. Sean Tu, Dinis Cheian, Sarah Gabriele, Benjamin N. Rome, Aaron S. Kesselheim
Correction to: Nature Biotechnology https://doi.org/10.1038/s41587-024-02298-w, published online 17 July 2024.
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Advances in optical pooled screening to map spatial complexity Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-07 Maurice Kahnwald, Marius Mählen, Koen C. Oost, Prisca Liberali
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A framework for expanding discovery efforts with compressed phenotypic screens Nat. Biotechnol. (IF 33.1) Pub Date : 2024-10-07