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Meeting metformin again for the first time. Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Douglas R Green
New evidence convincingly shows that metformin, a drug that reduces circulating glucose, acts by inhibiting mitochondrial complex I.
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Chiral flat-band optical cavity with atomically thin mirrors Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Daniel G. Suárez-Forero, Ruihao Ni, Supratik Sarkar, Mahmoud Jalali Mehrabad, Erik Mechtel, Valery Simonyan, Andrey Grankin, Kenji Watanabe, Takashi Taniguchi, Suji Park, Houk Jang, Mohammad Hafezi, You Zhou
A fundamental requirement for photonic technologies is the ability to control the confinement and propagation of light. Widely used platforms include two-dimensional (2D) optical microcavities in which electromagnetic waves are confined in either metallic or distributed Bragg reflectors. Recently, transition metal dichalcogenides hosting tightly bound excitons with high optical quality have emerged
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An agile multimodal microrobot with architected passively morphing wheels Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Yuchen Lai, Chuanqi Zang, Guoquan Luo, Shiwei Xu, Renheng Bo, Jianzhong Zhao, Youzhou Yang, Tianqi Jin, Yu Lan, Yuejiao Wang, Li Wen, Wenbo Pang, Yihui Zhang
Multimodal microrobots are of growing interest due to their capabilities to navigate diverse terrains, with promising applications in inspection, exploration, and biomedicine. Despite remarkable progress, it remains challenging to combine the attributes of excellent maneuverability, low power consumption, and high robustness in a single multimodal microrobot. We propose an architected design of a passively
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Terrestrial evidence for volcanogenic sulfate-driven cooling event ~30 kyr before the Cretaceous–Paleogene mass extinction Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Lauren K. O’Connor, Rhodri M. Jerrett, Gregory D. Price, Tyler R. Lyson, Sabine K. Lengger, Francien Peterse, Bart E. van Dongen
Alongside the Chicxulub meteorite impact, Deccan volcanism is considered a primary trigger for the Cretaceous–Paleogene (K–Pg) mass extinction. Models suggest that volcanic outgassing of carbon and sulfur—potent environmental stressors—drove global temperature change, but the relative timing, duration, and magnitude of such change remains uncertain. Here, we use the organic paleothermometer MBT′ 5me
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Regional differences in three-dimensional fiber organization, smooth muscle cell phenotype, and contractility in the pregnant mouse cervix Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Christopher J. Hansen, Jackson H. Rogers, Alexus J. Brown, Naoko Boatwright, Shajila Siricilla, Christine M. O’Brien, Sourav Panja, Cameron M. Nichols, Kanchana Devanathan, Benjamin M. Hardy, Mark D. Does, Adam W. Anderson, Bibhash C. Paria, Anita Mahadevan-Jansen, Jeff Reese, Jennifer L. Herington
The orientation and function of smooth muscle in the cervix may contribute to the important biomechanical properties that change during pregnancy. Thus, this study examined the three-dimensional structure, smooth muscle phenotype, and mechanical and contractile functions of the upper and lower cervix of nongravid (not pregnant) and gravid (pregnant) mice. In gravid cervix, we uncovered region-specific
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Solvent-responsive covalent organic framework membranes for precise and tunable molecular sieving Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Hao Yang, Haoyuan Zhang, Chengjun Kang, Chunqing Ji, Dongchen Shi, Dan Zhao
Membrane-based nanofiltration has the potential to revolutionize the large-scale treatment of organic solvents in various applications. However, the widely used commercial membranes suffer from low permeability, narrow structural tunability, and limited chemical resistance. Here, we report a strategy for fabricating covalent organic framework (COF) membranes with solvent-responsive structural flexibility
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Distinct impact modes of polygenic disposition to dyslexia in the adult brain Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Sourena Soheili-Nezhad, Dick Schijven, Rogier B. Mars, Simon E. Fisher, Clyde Francks
Dyslexia is a common and partially heritable condition that affects reading ability. In a study of up to 35,231 adults, we explored the structural brain correlates of genetic disposition to dyslexia. Individual dyslexia-disposing genetic variants showed distinct patterns of association with brain structure. Independent component analysis revealed various brain networks that each had their own genomic
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Probing quantum geometry through optical conductivity and magnetic circular dichroism Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Barun Ghosh, Yugo Onishi, Su-Yang Xu, Hsin Lin, Liang Fu, Arun Bansil
Probing ground-state quantum geometry and topology through optical responses is not only of fundamental interest, but it can also offer several practical advantages. Here, using first-principles calculations on thin films of the antiferromagnetic topological insulator MnBi 2 Te 4 , we demonstrate how the generalized optical weight arising from the absorptive part of the optical conductivity can be
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The nucleocapsid architecture and structural atlas of the prototype baculovirus define the hallmarks of a new viral realm Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Bronte A. Johnstone, Joshua M. Hardy, Jungmin Ha, Anamarija Butkovic, Paulina Koszalka, Cathy Accurso, Hariprasad Venugopal, Alex de Marco, Mart Krupovic, Fasséli Coulibaly
Baculovirus is the most studied insect virus owing to a broad ecological distribution and ease of engineering for biotechnological applications. However, its structure and evolutionary place in the virosphere remain enigmatic. Using cryo–electron microscopy, we show that the nucleocapsid forms a covalently cross-linked helical tube protecting a highly compacted 134-kilobase pair DNA genome. The ends
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Mechanosensitive nuclear uptake of chemotherapy Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Nicholas R. Scott, Sowon Kang, Sapun H. Parekh
The nucleus is at the nexus of mechanotransduction and the final barrier for most first line chemotherapeutics. Here, we study the intersection between nuclear-cytoskeletal coupling and chemotherapy nuclear internalization. We find that chronic and acute modulation of intracellular filaments changes nuclear influx of doxorubicin (DOX). Rapid changes in cell strain by disruption of cytoskeletal and
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Interfacial charge transfer and its impact on transport properties of LaNiO 3 /LaFeO 3 superlattices Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Le Wang, Zhifei Yang, Krishna Prasad Koirala, Mark E. Bowden, John W. Freeland, Peter V. Sushko, Cheng-Tai Kuo, Scott A. Chambers, Chongmin Wang, Bharat Jalan, Yingge Du
Charge transfer or redistribution at oxide heterointerfaces is a critical phenomenon, often leading to remarkable properties such as two-dimensional electron gas and interfacial ferromagnetism. Despite studies on LaNiO 3 /LaFeO 3 superlattices and heterostructures, the direction and magnitude of the charge transfer remain debated, with some suggesting no charge transfer due to the high stability of
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A neurocognitive pathway for engineering artificial touch Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Ilana Nisky, Tamar R. Makin
Artificial haptics has the potential to revolutionize the way we integrate physical and virtual technologies in our daily lives, with implications for teleoperation, motor skill acquisition, rehabilitation, gaming, interpersonal communication, and beyond. Here, we delve into the intricate interplay between the somatosensory system and engineered haptic inputs for perception and action. We critically
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Biologically inspired bioactive hydrogels for scarless corneal repair Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Jianan Huang, Tuoying Jiang, Jiqiao Qie, Xiaoyu Cheng, Yiyao Wang, Yang Ye, Zhuoheng Yang, Hongji Yan, Ke Yao, Haijie Han
Corneal injury–induced fibrosis occurs because of corneal epithelial basement membrane (EBM) injury and defective regeneration. Corneal fibrosis inhibition and transparency restoration depend on reestablished EBM, where the collagen network provides structural stability and heparan sulfate binds corneal epithelium–derived cytokines to regulate homeostasis. Inspired by this, bioactive hydrogels (Hep@Gel)
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Structural basis for membrane association and catalysis by phosphatidylserine synthase in Escherichia coli Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Eunju Lee, Gyuhyeok Cho, Jungwook Kim
Phosphatidylserine synthase (PssA) is essential in the biosynthesis of phosphatidylethanolamine, a major phospholipid of bacterial membranes. A peripheral membrane protein PssA can associate with the cellular membrane in its active state or exist in the cytosol in an inactive form. The membrane-bound enzyme acts on cytidine diphosphate diacylglycerol (CDP-DG) to form cytidine monophosphate and a covalent
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Future spinal reflex is embedded in primary motor cortex output Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Tatsuya Umeda, Osamu Yokoyama, Michiaki Suzuki, Miki Kaneshige, Tadashi Isa, Yukio Nishimura
Mammals can execute intended limb movements despite the fact that spinal reflexes involuntarily modulate muscle activity. To generate appropriate muscle activity, the cortical descending motor output must coordinate with spinal reflexes, yet the underlying neural mechanism remains unclear. We simultaneously recorded activities in motor-related cortical areas, afferent neurons, and forelimb muscles
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AI-driven universal lower-limb exoskeleton system for community ambulation Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Dawit Lee, Sanghyub Lee, Aaron J. Young
Exoskeletons offer promising solutions for improving human mobility, but a key challenge is ensuring the controller adapts to changing walking conditions. We present an artificial intelligence (AI)–driven universal exoskeleton system that dynamically switches assistance types between walking modes, modulates assistance levels corresponding to the ground slope, and delivers assistance timely based on
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Mechanisms underlying modulation of human GlyRα3 receptors by Zn 2+ and pH Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Kayla Kindig, Eric Gibbs, David Seiferth, Philip C. Biggin, Sudha Chakrapani
Glycine receptors (GlyRs) regulate motor control and pain processing in the central nervous system through inhibitory synaptic signaling. The subtype GlyRα3 expressed in nociceptive sensory neurons of the spinal dorsal horn is a key regulator of physiological pain perception. Disruption of spinal glycinergic inhibition is associated with chronic inflammatory pain states, making GlyRα3 an attractive
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A global comparison of surface and subsurface microbiomes reveals large-scale biodiversity gradients, and a marine-terrestrial divide Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 S. Emil Ruff, Isabella Hrabe de Angelis, Megan Mullis, Jérôme P. Payet, Cara Magnabosco, Karen G. Lloyd, Cody S. Sheik, Andrew D. Steen, Anna Shipunova, Aleksey Morozov, Brandi Kiel Reese, James A. Bradley, Clarisse Lemonnier, Matthew O. Schrenk, Samantha B. Joye, Julie A. Huber, Alexander J. Probst, Hilary G. Morrison, Mitchell L. Sogin, Joshua Ladau, Frederick Colwell
Subsurface environments are among Earth’s largest habitats for microbial life. Yet, until recently, we lacked adequate data to accurately differentiate between globally distributed marine and terrestrial surface and subsurface microbiomes. Here, we analyzed 478 archaeal and 964 bacterial metabarcoding datasets and 147 metagenomes from diverse and widely distributed environments. Microbial diversity
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Metabolomic age (MileAge) predicts health and life span: A comparison of multiple machine learning algorithms Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Julian Mutz, Raquel Iniesta, Cathryn M. Lewis
Biological aging clocks produce age estimates that can track with age-related health outcomes. This study aimed to benchmark machine learning algorithms, including regularized regression, kernel-based methods, and ensembles, for developing metabolomic aging clocks from nuclear magnetic resonance spectroscopy data. The UK Biobank data, including 168 plasma metabolites from up to N = 225,212 middle-aged
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Reactive vapor-phase dealloying-alloying turns oxides into sustainable bulk nano-structured porous alloys Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Shaolou Wei, Yan Ma, Dierk Raabe
For millennia, alloying has been the greatest gift from metallurgy to humankind: a process of mixing elements, propelling our society from the Bronze Age to the Space Age. Dealloying, by contrast, acts like a penalty: a corrosive counteracting process of selectively removing elements from alloys or compounds, degrading their structural integrity over time. We show that when these two opposite metallurgical
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Moo19 and B2: Structures of Schitoviridae podophages with T = 9 geometry and tailspikes with esterase activity Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Sundharraman Subramanian, Silje M. Bergland Drarvik, Kendal R. Tinney, Sarah M. Doore, Kristin N. Parent
Podophages are, by far, the least well studied of all the bacteriophages. Despite being classified together due to their short, noncontractile tails, there is a huge amount of diversity among members of this group. Of the podophages, the N4-like Schitoviridae family is the least well studied structurally and is quite divergent from well-characterized podophages such as T7 and P22. In this work, we
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Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Joana Soldado-Magraner, Valerio Mante, Maneesh Sahani
The complex neural activity of prefrontal cortex (PFC) is a hallmark of cognitive processes. How these rich dynamics emerge and support neural computations is largely unknown. Here, we infer mechanisms underlying the context-dependent integration of sensory inputs by fitting dynamical models to PFC population responses of behaving monkeys. A class of models implementing linear dynamics driven by external
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Deep representation learning of protein-protein interaction networks for enhanced pattern discovery Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Rui Yan, Md Tauhidul Islam, Lei Xing
Protein-protein interaction (PPI) networks, where nodes represent proteins and edges depict myriad interactions among them, are fundamental to understanding the dynamics within biological systems. Despite their pivotal role in modern biology, reliably discerning patterns from these intertwined networks remains a substantial challenge. The essence of the challenge lies in holistically characterizing
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Designing microplastic-binding peptides with a variational quantum circuit–based hybrid quantum-classical approach Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Raul Conchello Vendrell, Akshay Ajagekar, Michael T. Bergman, Carol K. Hall, Fengqi You
De novo peptide design exhibits great potential in materials engineering, particularly for the use of plastic-binding peptides to help remediate microplastic pollution. There are no known peptide binders for many plastics—a gap that can be filled with de novo design. Current computational methods for peptide design exhibit limitations in sampling and scaling that could be addressed with quantum computing
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The three-dimensional genome drives the evolution of asymmetric gene duplicates via enhancer capture-divergence Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 UnJin Lee, Deanna Arsala, Shengqian Xia, Cong Li, Mujahid Ali, Nicolas Svetec, Christopher B. Langer, Débora R. Sobreira, Ittai Eres, Dylan Sosa, Jianhai Chen, Li Zhang, Patrick Reilly, Alexander Guzzetta, J.J. Emerson, Peter Andolfatto, Qi Zhou, Li Zhao, Manyuan Long
Previous evolutionary models of duplicate gene evolution have overlooked the pivotal role of genome architecture. Here, we show that proximity-based regulatory recruitment by distally duplicated genes is an efficient mechanism for modulating tissue-specific production of preexisting proteins. By leveraging genomic asymmetries, we performed a coexpression analysis on Drosophila melanogaster tissue data
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The Plasmodium falciparum NCR1 transporter is an antimalarial target that exports cholesterol from the parasite’s plasma membrane Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Zhemin Zhang, Meinan Lyu, Xu Han, Sepalika Bandara, Meng Cui, Eva S. Istvan, Xinran Geng, Marios L. Tringides, William D. Gregor, Masaru Miyagi, Jenna Oberstaller, John H. Adams, Youwei Zhang, Marvin T. Nieman, Johannes von Lintig, Daniel E. Goldberg, Edward W. Yu
Malaria, a devastating parasitic infection, is the leading cause of death in many developing countries. Unfortunately, the most deadliest causative agent of malaria, Plasmodium falciparum , has developed resistance to nearly all currently available antimalarial drugs. The P. falciparum Niemann-Pick type C1–related (PfNCR1) transporter has been identified as a druggable target, but its structure and
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Hydroalkylation of unactivated olefins with C(sp 3 )─H compounds enabled by NiH-catalyzed radical relay Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Jiang-Ling Shi, Youcheng Wang, Yufeng Han, Jinqi Chen, Xiaolan Pu, Ying Xia
The hydroalkylation reaction of olefins with alkanes is a highly desirable synthetic transformation toward the construction of C(sp 3 )─C(sp 3 ) bonds. However, such transformation has proven to be challenging for unactivated olefins, particularly when the substrates lack directing groups or acidic C(sp 3 )─H bonds. Here, we address this challenge by merging NiH-catalyzed radical relay strategy with
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In-line tempering eliminates the domain boundary in perovskite single crystals for high–energy resolution ionizing radiation detectors Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Xueying Yang, Yilong Song, Lixiang Wang, Yuan Sun, Bowen Jin, Jing Wang, Hui Liu, Yujie Yang, Qianqian Lin, Yanjun Fang, Qingfeng Dong
Metal halide perovskite single crystals (SCs) emerge as a promising candidate for ionizing radiation detection. The realization of top-performing radiation detectors typically relies on careful crystal selection from broad candidate groups, as residual strain remains unavoidable during the SC growth process, which often leads to the formation of ferroelastic domains with varied orientations. Here,
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dCasMINI-mediated therapy rescues photoreceptors degeneration in a mouse model of retinitis pigmentosa Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Qing Wang, Xiaoshu Xu, Siyu Chen, Rui Lu, Liang Li, Chien-Hui Lo, Zhiquan Liu, Ke Ning, Tingting Li, Tia J. Kowal, Biao Wang, Mary E. Hartnett, Sui Wang, Lei S. Qi, Yang Sun
Retinitis pigmentosa (RP) is characterized by degeneration of rod and cone photoreceptors that progresses to irreversible blindness. Now, there are no mutation-agnostic approaches to treat RP. Here, we utilized a single adeno-associated virus (AAV)–based CRISPR activation system to activate phosphodiesterase 6B (Pde6b) to mitigate the severe degeneration in Pde6a nmf363 mice. We demonstrate that transcriptional
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Dynamic responses of striatal cholinergic interneurons control behavioral flexibility Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Zhenbo Huang, Ruifeng Chen, Matthew Ho, Xueyi Xie, Himanshu Gangal, Xuehua Wang, Jun Wang
Striatal cholinergic interneurons (CINs) are key to regulating behavioral flexibility, involving both extinguishing learned actions and adopting new ones. However, the mechanisms driving these processes remain elusive. In this study, we initially demonstrate that chronic alcohol consumption disrupts the burst-pause dynamics of CINs and impairs behavioral flexibility. We next aimed to elucidate the
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Metformin targets mitochondrial complex I to lower blood glucose levels Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Colleen R. Reczek, Ram P. Chakrabarty, Karis B. D’Alessandro, Zachary L. Sebo, Rogan A. Grant, Peng Gao, G. R. Budinger, Navdeep S. Chandel
Metformin is among the most prescribed antidiabetic drugs, but the primary molecular mechanism by which metformin lowers blood glucose levels is unknown. Previous studies have proposed numerous mechanisms by which acute metformin lowers blood glucose, including the inhibition of mitochondrial complex I of the electron transport chain (ETC). Here, we used transgenic mice that globally express the Saccharomyces
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Principles of CRISPR-Cas13 mismatch intolerance enable selective silencing of point-mutated oncogenic RNA with single-base precision Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Carolyn Shembrey, Ray Yang, Joshua Casan, Wenxin Hu, Honglin Chen, Gurjeet J. Singh, Teresa Sadras, Krishneel Prasad, Jake Shortt, Ricky W. Johnstone, Joseph A. Trapani, Paul G. Ekert, Mohamed Fareh
Single-nucleotide variants (SNVs) are extremely prevalent in human cancers, although most of these remain clinically unactionable. The programmable RNA nuclease CRISPR-Cas13 has been deployed to specifically target oncogenic RNAs. However, silencing oncogenic SNVs with single-base precision remains extremely challenging due to the intrinsic mismatch tolerance of Cas13. Here, we show that introducing
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Ancient genomes reveal Avar-Hungarian transformations in the 9th-10th centuries CE Carpathian Basin Sci. Adv. (IF 11.7) Pub Date : 2024-12-18 Dániel Gerber, Veronika Csáky, Bea Szeifert, Noémi Borbély, Kristóf Jakab, György Mező, Zsolt Petkes, Frigyes Szücsi, Sándor Évinger, Csilla Líbor, Piroska Rácz, Krisztián Kiss, Balázs Gusztáv Mende, Béla Miklós Szőke, Anna Szécsényi-Nagy
During the Early Medieval period, the Carpathian Basin witnessed substantial demographic shifts, notably under the Avar dominance for ~250 years, followed by the settlement of early Hungarians in the region during the late 9th century CE. This study presents the genetic analysis of 296 ancient samples, including 103 shotgun-sequenced genomes, from present-day Western Hungary. By using identity-by-descent
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Targeted nanoliposomes to improve enzyme replacement therapy of Fabry disease. Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Judit Tomsen-Melero,Marc Moltó-Abad,Josep Merlo-Mas,Zamira V Díaz-Riascos,Edgar Cristóbal-Lecina,Andreu Soldevila,Thomas Altendorfer-Kroath,Dganit Danino,Inbal Ionita,Jan Skov Pedersen,Lyndsey Snelling,Hazel Clay,Aida Carreño,José L Corchero,Daniel Pulido,Josefina Casas,Jaume Veciana,Simó Schwartz,Santi Sala,Albert Font,Thomas Birngruber,Miriam Royo,Alba Córdoba,Nora Ventosa,Ibane Abasolo,Elisabet
The central nervous system represents a major target tissue for therapeutic approach of numerous lysosomal storage disorders. Fabry disease arises from the lack or dysfunction of the lysosomal alpha-galactosidase A (GLA) enzyme, resulting in substrate accumulation and multisystemic clinical manifestations. Current enzyme replacement therapies (ERTs) face limited effectiveness due to poor enzyme biodistribution
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Assembly and biological functions of metal-biomolecule network nanoparticles formed by metal-phosphonate coordination Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Wanjun Xu, Zhixing Lin, Chan-Jin Kim, Zhaoran Wang, Tianzheng Wang, Christina Cortez-Jugo, Frank Caruso
Metal-organic networks have attracted widespread interest owing to their hybrid physicochemical properties. Natural biomolecules represent attractive building blocks for these materials because of their inherent biological function and high biocompatibility; however, assembling them into coordination network materials, especially nanoparticles (NPs), is challenging. Herein, we exploit the coordination
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Effect of pandemic influenza A virus PB1 genes of avian origin on viral RNA polymerase activity and pathogenicity Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Stephanie L. Williams, Li Qi, Zong-Mei Sheng, Yongli Xiao, Ashley Freeman, Lex Matthews, Sharon Fong Legaspi, Ervin Fodor, Jeffery K. Taubenberger
Zoonotic influenza A virus (IAV) infections pose a substantial threat to global health. The influenza RNA-dependent RNA polymerase (RdRp) comprises the PB2, PB1, and PA proteins. Of the last four pandemic IAVs, three featured avian-origin PB1 genes. Prior research linked these avian PB1 genes to increased viral fitness when reassorted with human IAV genes. This study evaluated chimeric RdRps with PB1
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Architecture and functional regulation of a plant PSII-LHCII megacomplex Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Jianyu Shan, Dariusz M. Niedzwiedzki, Rupal S. Tomar, Zhenfeng Liu, Haijun Liu
Photosystem II (PSII) splits water in oxygenic photosynthesis on Earth. The structure and function of the C 4 S 4 M 2 -type PSII-LHCII (light-harvesting complex II) megacomplexes from the wild-type and PsbR-deletion mutant plants are studied through electron microscopy (EM), structural mass spectrometry, and ultrafast fluorescence spectroscopy [time-resolved fluorescence (TRF)]. The cryo-EM structure
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Composition and in situ structure of the Methanospirillum hungatei cell envelope and surface layer Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Hui Wang, Jiayan Zhang, Shiqing Liao, Anne M. Henstra, Deborah Leon, Jonathan Erde, Joseph A. Loo, Rachel R. Ogorzalek Loo, Z. Hong Zhou, Robert P. Gunsalus
Archaea share genomic similarities with Eukarya and cellular architectural similarities with Bacteria, though archaeal and bacterial surface layers (S-layers) differ. Using cellular cryo–electron tomography, we visualized the S-layer lattice surrounding Methanospirillum hungatei , a methanogenic archaeon. Though more compact than known structures, M. hungatei ’s S-layer is a flexible hexagonal lattice
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The Ptch/SPOUT1 methyltransferase deposits an m 3 U modification on 28 S rRNA for normal ribosomal function in flies and humans Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Jie Chen, Yaofu Bai, Yuantai Huang, Min Cui, Yiqing Wang, Zhenqi Gu, Xiaolong Wu, Yubin Li, Yikang S. Rong
The ribosomal RNA (rRNA) is one of the most heavily modified RNA species in nature. Although we have advanced knowledge of the sites, functions, and the enzymology of many of the rRNA modifications from all kingdoms of life, we lack basic understanding of many of those that are not universally present. A single N 3 modified uridine base (m 3 U) was identified to be present on the 28 S rRNA from humans
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Integrated analysis of immunometabolic interactions in Down syndrome Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Lucas A. Gillenwater, Matthew D. Galbraith, Angela L. Rachubinski, Neetha Paul Eduthan, Kelly D. Sullivan, Joaquin M. Espinosa, James C. Costello
Down syndrome (DS), caused by trisomy 21 (T21), results in immune and metabolic dysregulation. People with DS experience co-occurring conditions at higher rates than the euploid population. However, the interplay between immune and metabolic alterations and the clinical manifestations of DS are poorly understood. Here, we report an integrated analysis of immunometabolic pathways in DS. Using multi-omics
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Smart control lipid-based nanocarriers for fine-tuning gut hormone secretion Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Yining Xu, Cécilia Bohns Michalowski, Jackie Koehler, Tamana Darwish, Nunzio Guccio, Constanza Alcaino, Inês Domingues, Wunan Zhang, Valentina Marotti, Matthias Van Hul, Paola Paone, Melitini Koutsoviti, Ben J. Boyd, Daniel J. Drucker, Patrice D. Cani, Frank Reimann, Fiona M. Gribble, Ana Beloqui
Modulating the endogenous stores of gastrointestinal hormones is considered a promising strategy to mimic gut endocrine function, improving metabolic dysfunction. Here, we exploit mouse and human knock-in and knockout intestinal organoids and show that agents used as commercial lipid excipients can activate nutrient-sensitive receptors on enteroendocrine cells (EECs) and, when formulated as lipid nanocarriers
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Predicting optimal mixotrophic metabolic strategies in the global ocean Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Holly V. Moeller, Kevin M. Archibald, Suzana G. Leles, Ferdinand Pfab
Mixotrophic protists combine photosynthesis with the ingestion of prey to thrive in resource-limited conditions in the ocean. Yet, how they fine-tune resource investments between their two different metabolic strategies remains unclear. Here, we present a modeling framework (Mixotroph Optimal Contributions to Heterotrophy and Autotrophy) that predicts the optimal (growth-maximizing) investments of
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Bioinspired balloon catheter integrated with stretchable “flounder” electrodes under high voltage for uniform pulsed field ablation Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Xuejing Shen, Erwen Jia, Yin Huang, Dingbang Ge, Zheng Sun, Zhiyan Yang, Ping Zhang, Yihao Chen, Xue Feng
Atrial fibrillation leads to severe diseases such as heart failure and strokes. While catheter ablation is prevalent for the treatment, existing techniques hardly can achieve both tissue selectivity and ablation uniformity. Here, we propose a bioinspired strategy for balloon-based pulsed field ablation (PFA) systems based on “flounder” electrodes. Inspired by a flounder skeleton and citrus peels, the
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Ex vivo expansion and hydrogel-mediated in vivo delivery of tissue-resident memory T cells for immunotherapy Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Shuyi Li, Zhi-Cheng Yao, Hanzhi Wang, Jonathan A. Ecker, Mary O. Omotoso, Jaechan Lee, Jiayuan Kong, Hexiang Feng, Worarat Chaisawangwong, Si-Sim Kang, Sydney R. Shannon, Natalie K. Livingston, Joan G. Bieler, Shweta Singh, Maya L. Zhang, Pilar O’Neal, Emily Ariail, Benjamin Biggs, John W. Hickey, Hai-Quan Mao, Jonathan P. Schneck
Tissue-resident memory T (T RM ) cells preferentially reside in peripheral tissues, serving as key players in tumor immunity and immunotherapy. The lack of effective approaches for expanding T RM cells and delivering these cells in vivo hinders the exploration of T RM cell–mediated cancer immunotherapy. Here, we report a nanoparticle artificial antigen-presenting cell (nano-aAPC) ex vivo expansion
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Flexible adjustment of oxytocin neuron activity in mouse dams revealed by microendoscopy Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Kasane Yaguchi, Kazunari Miyamichi, Gen-ichi Tasaka
Oxytocin (OT) neurons in the hypothalamic paraventricular nucleus (PVH) play an important role in various physiological and behavioral processes, including the initiation of milk ejection and the regulation of maternal behaviors. However, their activity patterns at the single-cell level remain poorly understood. Using microendoscopic Ca 2+ imaging in freely moving mouse dams, we demonstrate highly
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The recombination efficiency of the bacterial integron depends on the mechanical stability of the synaptic complex Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Ekaterina Vorobevskaia, Céline Loot, Didier Mazel, Michael Schlierf
Multiple antibiotic resistances are a major global health threat. The predominant tool for adaptation in Gram-negative bacteria is the integron. Under stress, it rearranges gene cassettes to offer an escape using the tyrosine recombinase IntI, recognizing folded DNA hairpins, the attC sites. Four recombinases and two attC sites form the synaptic complex. Yet, for unclear reasons, the recombination
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Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Angeliki Platania, Cathie Erb, Mariano Barbieri, Bastien Molcrette, Erwan Grandgirard, Marit A. C. de Kort, Wim Pomp, Karen Meaburn, Tiegh Taylor, Virlana M. Shchuka, Silvia Kocanova, Mariia Nazarova, Guilherme Monteiro Oliveira, Jennifer A. Mitchell, Evi Soutoglou, Tineke L. Lenstra, Nacho Molina, Argyris Papantonis, Kerstin Bystricky, Tom Sexton
The spatiotemporal configuration of genes with distal regulatory elements is believed to be crucial for transcriptional control, but full mechanistic understanding is lacking. We combine simultaneous live tracking of pairs of genomic loci and nascent transcripts with molecular dynamics simulations to assess the Sox2 gene and its enhancer. We find that both loci exhibit more constrained mobility than
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Cretaceous coastal mountain building and potential impacts on climate change in East Asia Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Jianhua Li, Shuwen Dong, Guochun Zhao, Peter A. Cawood, Stephen T. Johnston, Jian Zhang, Yujia Xin, Jinming Wang
Crustal thickness and elevation variations control mountain building and climate change at convergent margins. As an archetypal Andean-type convergent margin, eastern Asia preserves voluminous magmas ideal for quantifying these processes and their impacts on climate. Here, we use Sr/Y and Ce/Y proxies to show that the crust experienced alternating thickening and thinning during the Late Mesozoic. We
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Computational and digital analyses in the INSPIRE mouse cohort to define sex-specific functional determinants of biological aging Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Yohan Santin, Mattia Chiesa, Amélie Alfonso, Yosra Doghri, Ryeonshi Kang, Fraha Haidar, Pilar Oreja-Fuentes, Occiane Fousset, Rana Zahreddine, Mégane Guardia, Lucas Lemmel, Mara Rigamonti, Giorgio Rosati, Cédrick Florian, Sébastien Gauzin, Sophie Guyonnet, Yves Rolland, Philipe de Souto Barreto, Bruno Vellas, Bruno Guiard, Angelo Parini
Biological age, which reflects the physiological state of an individual, offers a better predictive value than chronological age for age-related diseases and mortality. Nonetheless, determining accurate functional features of biological age remains challenging due to the multifactorial nature of aging. Here, we established a unique mouse cohort comprising 1576 male and female outbred SWISS mice subjected
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Mid-infrared photodetection with 2D metal halide perovskites at ambient temperature Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Yanyan Li, Shunran Li, Du Chen, Conrad A. Kocoj, Ankun Yang, Benjamin T. Diroll, Peijun Guo
The detection of mid-infrared (MIR) light is technologically important for applications such as night vision, imaging, sensing, and thermal metrology. Traditional MIR photodetectors either require cryogenic cooling or have sophisticated device structures involving complex nanofabrication. Here, we conceive spectrally tunable MIR detection by using two-dimensional metal halide perovskites (2D-MHPs)
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Tunable elliptical cylinders for rotational mechanical studies of single DNA molecules Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Yifeng Hong, Fan Ye, Xiang Gao, James T. Inman, Michelle D. Wang
The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage. In this
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3D seismic evidence for a single Early Pleistocene glaciation of the central North Sea Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Dag Ottesen, Christine L. Batchelor, Helge Løseth, Harald Brunstad
Efforts to understand how Pleistocene climate changes were translated into fluctuations in ice sheet extent and volume are limited by a lack of consensus about the glacial history of the North Sea. Here, we use high-resolution 3D seismic data to interpret the landforms and sediments of the central North Sea in unprecedented detail. In contrast to previous interpretations of multiple extensive early
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Reconfigurable entanglement distribution network based on pump management of a spontaneous four-wave mixing source Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Jingyuan Liu, Dongning Liu, Zhanping Jin, Zhihao Lin, Hao Li, Lixing You, Xue Feng, Fang Liu, Kaiyu Cui, Wei Zhang, Yidong Huang
Leveraging the unique properties of quantum entanglement, quantum entanglement distribution networks support multiple quantum information applications and are essential to the development of quantum networks. However, practical implementation poses fundamental challenges to network scalability and flexibility. Here, we propose a reconfigurable entanglement distribution network scheme based on tunable
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Regulation of volume-regulated anion channels alters sensitivity to platinum chemotherapy Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Lily Elizabeth R. Feldman, Saswat Mohapatra, Robert T. Jones, Mathijs Scholtes, Charlene B. Tilton, Michael V. Orman, Molishree Joshi, Cailin S. Deiter, Travis P. Broneske, Fangyuan Qu, Corazon Gutierrez, Huihui Ye, Eric T. Clambey, Sarah Parker, Tokameh Mahmoudi, Tahlita Zuiverloon, James C. Costello, Dan Theodorescu
Cisplatin-based chemotherapy is used across many common tumor types, but resistance reduces the likelihood of long-term survival. We previously found the puromycin-sensitive aminopeptidase, NPEPPS, as a druggable driver of cisplatin resistance in vitro and in vivo and in patient-derived organoids. Here, we present a general mechanism where NPEPPS interacts with the volume-regulated anion channels (VRACs)
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Nzf2 promotes oligodendrocyte differentiation and regeneration via repressing HDAC1-mediated histone deacetylation Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Xiaofeng Xu, Minxi Fang, Lixia Chen, Hao Huang, Zhong-Min Dai, Junlin Yang, Mengsheng Qiu
Proper axonal myelination and function of the vertebrate central nervous system rely largely on the timely differentiation of oligodendrocytes (OLs), yet key regulatory factors remain enigmatic. Our study reveals neural zinc finger (Nzf2) as a crucial orchestrator that controls the timing of OL differentiation both during development and myelin repair, contrasting with its previously suggested role
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High-performance H 2 /CO 2 separation from 4-nm-thick oriented Zn 2 (benzimidazole) 4 films Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Shuqing Song, Qi Liu, S. Swathilakshmi, Heng-Yu Chi, Zongyao Zhou, Ranadip Goswami, Dmitry Chernyshov, Kumar Varoon Agrawal
High-performance membrane-based H 2 /CO 2 separation offers a promising way to reduce the energy costs of precombustion capture. Current membranes, often made from two-dimensional laminates like metal-organic frameworks, have limitations due to complex fabrication methods requiring high temperatures, organic solvents, and long synthesis time. These processes often result in poor H 2 /CO 2 selectivity
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An alternate route for cellulose microfibril biosynthesis in plants Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Eric M. Roberts, Kai Yuan, Arielle M. Chaves, Ethan T. Pierce, Rosalie Cresswell, Ray Dupree, Xiaolan Yu, Richard L. Blanton, Shu-Zon Wu, Magdalena Bezanilla, Paul Dupree, Candace H. Haigler, Alison W. Roberts
Similar to cellulose synthases (CESAs), cellulose synthase–like D (CSLD) proteins synthesize β-1,4-glucan in plants. CSLDs are important for tip growth and cytokinesis, but it was unknown whether they form membrane complexes in vivo or produce microfibrillar cellulose. We produced viable CESA-deficient mutants of the moss Physcomitrium patens to investigate CSLD function without interfering CESA activity
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Model predictions of global geologic hydrogen resources Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Geoffrey S. Ellis, Sarah E. Gelman
Geologic hydrogen could be a low-carbon primary energy resource; however, the magnitude of Earth’s subsurface endowment has not yet been assessed. Knowledge of the occurrence and behavior of natural hydrogen on Earth has been combined with information from geologic analogs to construct a mass balance model to predict the resource potential. Given the associated uncertainty, stochastic model results
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All eukaryotic SMC proteins induce a twist of −0.6 at each DNA loop extrusion step Sci. Adv. (IF 11.7) Pub Date : 2024-12-13 Richard Janissen, Roman Barth, Iain F. Davidson, Jan-Michael Peters, Cees Dekker
Eukaryotes carry three types of structural maintenance of chromosome (SMC) protein complexes, condensin, cohesin, and SMC5/6, which are ATP-dependent motor proteins that remodel the genome via DNA loop extrusion (LE). SMCs modulate DNA supercoiling but remains incompletely understood how this is achieved. Using a single-molecule magnetic tweezers assay that directly measures how much twist is induced