
样式: 排序: IF: - GO 导出 标记为已读
-
Self-organized institutions in evolutionary dynamical-systems games Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Kenji Itao, Kunihiko KanekoSocial institutions are systems of shared norms and rules that regulate people’s behaviors, often emerging without external enforcement. They provide criteria to distinguish cooperation from defection and establish rules to sustain cooperation, shaped through long-term trial and error. While principles for successful institutions have been proposed, the mechanisms underlying their emergence remain
-
Melting of nonreciprocal solids: How dislocations propel and fission in flowing crystals Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Stéphane Guillet, Alexis Poncet, Marine Le Blay, William T. M. Irvine, Vincenzo Vitelli, Denis BartoloWhen soft matter is driven out of equilibrium its constituents interact via effective interactions that escape Newton’s action–reaction principle. Prominent examples include the hydrodynamic interactions between colloidal particles driven in viscous fluids, phoretic interactions between chemically active colloids, and quorum-sensing interactions in bacterial colonies. Despite a recent surge of interest
-
FAO-fueled OXPHOS and NRF2-mediated stress resilience in MICs drive lymph node metastasis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Shan-Shan Li, Baifeng Zhang, Cuicui Huang, Yuying Fu, Yuying Zhao, Lanqi Gong, Yanan Tan, Huali Wang, Wenqi Chen, Jie Luo, Yu Zhang, Stephanie Ma, Li Fu, Chenli Liu, Jiandong Huang, Huai-Qiang Ju, Anne Wing-Mui Lee, Xin-Yuan GuanMetastasis is an inefficient process requiring cancer cells to adapt metabolically for survival and colonization in new environments. The contributions of tumor metabolic reprogramming to lymph node (LN) metastasis and its underlying mechanisms remain elusive. Through single-cell RNA sequencing, we identified rare metastasis-initiating cells (MICs) with stem-like properties that drive early LN metastasis
-
Privacy for free in the overparameterized regime Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Simone Bombari, Marco MondelliDifferentially private gradient descent (DP-GD) is a popular algorithm to train deep learning models with provable guarantees on the privacy of the training data. In the last decade, the problem of understanding its performance cost with respect to standard GD has received remarkable attention from the research community, which has led to upper bounds on the excess population risk R P in different
-
Interactions among nutrients govern the global grassland biomass–precipitation relationship Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Philip A. Fay, Laureano A. Gherardi, Laura Yahdjian, Peter B. Adler, Jonathan D. Bakker, Siddharth Bharath, Elizabeth T. Borer, W. Stanley Harpole, Erika Hersch-Green, Travis E. Huxman, Andrew S. MacDougall, Anita C. Risch, Eric W. Seabloom, Sumanta Bagchi, Isabel C. Barrio, Lori Biederman, Yvonne M. Buckley, Miguel N. Bugalho, Maria C. Caldeira, Jane A. Catford, QingQing Chen, Elsa E. Cleland, ScottEcosystems are experiencing changing global patterns of mean annual precipitation (MAP) and enrichment with multiple nutrients that potentially colimit plant biomass production. In grasslands, mean aboveground plant biomass is closely related to MAP, but how this relationship changes after enrichment with multiple nutrients remains unclear. We hypothesized the global biomass–MAP relationship becomes
-
DprA recruits ComM to facilitate recombination during natural transformation in Gram-negative bacteria Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Triana N. Dalia, Mérick Machouri, Céline Lacrouts, Yoann Fauconnet, Raphaël Guerois, Jessica Andreani, J. Pablo Radicella, Ankur B. DaliaNatural transformation (NT) represents one of the major modes of horizontal gene transfer in bacterial species. During NT, cells can take up free DNA from the environment and integrate it into their genome by homologous recombination. While NT has been studied for >90 y, the molecular details underlying this recombination remain poorly understood. Recent work has demonstrated that ComM is an NT-specific
-
Structural basis of ZP2-targeted female nonhormonal contraception Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Elisa Dioguardi, Alena Stsiapanava, Eileen Fahrenkamp, Ling Han, Daniele de Sanctis, José Inzunza, Luca JovineMonoclonal antibody IE-3 prevents mouse fertilization by binding ZP2, a major component of the oocyte-specific zona pellucida (ZP). We show that an IE-3-derived single-chain variable fragment (scFV) is sufficient for blocking fertilization in vitro and determine the structural basis of IE-3/ZP2 recognition. The high affinity of this interaction depends on induced fit of the epitope, offering insights
-
Unsupervised learning of structural relaxation in supercooled liquids from short-term fluctuations Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Yunrui Qiu, Inhyuk Jang, Xuhui Huang, Arun YethirajUnraveling the relationship between structural information and the dynamic properties of supercooled liquids is one of the great challenges of physics. Dynamic heterogeneity, characterized by the propensity of particles, is often used as a proxy for dynamic slowing. Over the years, significant efforts have been made to capture the structural variations linked to dynamic heterogeneity in supercooled
-
Global subnational estimates of migration of scientists reveal large disparities in internal and international flows Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Aliakbar Akbaritabar, Maciej J. Dańko, Xinyi Zhao, Emilio ZagheniResearchers are key contributors to innovation. Their migration results in talent circulation and recombination of ideas. Due to data shortage, little is known about subnational mobility of scientists and the interrelationships between their internal and international migration patterns. We used data on 30+ million Scopus publications of 19+ million authors to infer migration from changes in affiliations
-
Bourbon and Mycbp function with Otu to promote Sxl protein expression in the Drosophila female germline Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Marianne Mercer, Anirban Dasgupta, Krzysztof Pawłowski, Michael BuszczakIn Drosophila ovaries, germ cells differentiate through several stages of cyst development before entering meiosis. This early differentiation program depends on both the stepwise deployment of specific regulatory mechanisms and on maintenance of germline sexual identity. The study of female sterile mutations that result in formation of germ cell tumors has been invaluable in identifying the mechanisms
-
Epistasis-mediated compensatory evolution in a fitness landscape with adaptational tradeoffs Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-11
Suman G. Das, Muhittin Mungan, Joachim KrugThe evolutionary adaptation of an organism to a stressful environment often comes at the cost of reduced fitness. For example, resistance to antimicrobial drugs frequently reduces growth rate in the drug-free environment. This cost can be compensated without loss in resistance by mutations at secondary sites when the organism evolves again in the stress-free environment. Here, we analytically and numerically
-
Degenerate domain walls in supersymmetric theories Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Shi Chen, Evgenii Ievlev, Mikhail ShifmanIn supersymmetric Yang–Mills theories tension-degenerate domain walls are typical. Adding matter fields in fundamental representation, we arrive at supersymmetric quantum chromodynamics (SQCD) supporting similar walls. We demonstrate that the degenerate domain walls can belong to one of two classes: i) locally distinguishable, i.e. those which differ from each other locally (which could be detected
-
Astrocytic Ryk signaling coordinates scarring and wound healing after spinal cord injury Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Zhe Shen, Bo Feng, Wei Ling Lim, Timothy Woo, Yanlin Liu, Silvia Vicenzi, Jingyi Wang, Brian K. Kwon, Yimin ZouWound healing after spinal cord injury involves highly coordinated interactions among multiple cell types, which are poorly understood. Astrocytes play a central role in creating a border against the non-neural lesion core. To do so, astrocytes undergo dramatic morphological changes by first thickening and elongating their processes and then overlapping them to form a physical barrier. We show here
-
Arf1 and ARFGEF2/Sec71 control neuroblast polarity by anchoring nonmuscle myosin II Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Mahekta R. Gujar, Ye Sing Tan, Yang Gao, Hongyan WangNeural stem cells (NSCs) can self-renew and undergo differentiation via asymmetric division. Dysregulation in the balance between self-renewal and differentiation can lead to tumor formation or neurodevelopmental disorders. However, the regulation of phosphatidylinositol transfer protein (PITP)-dependent PI(4)P pools and myosin localization during asymmetric division in dividing cells is not well established
-
Downregulation of Nesprin1 by Runx2 deficiency is critical for the development of skeletal laminopathy-like pathology Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Akiko Saito, Kazuaki Nagayama, Hiroyuki Okada, Shoko Onodera, Natsuko Aida, Takashi Nakamura, Takashi Sawada, Hironori Hojo, Shigeaki Kato, Toshifumi AzumaRunx2 is a master regulator of bone formation, and its dysfunction causes cleidocranial dysplasia (CCD) in humans. When iPS cells were generated from patients with CCD and Runx2-deficient iPS cells were generated using gene-editing techniques, abnormal laminopathy-like nuclei were observed. Runx2-deficient cells showed reduced Lamin A/C expression, but not protein levels. However, in Runx2-deficient
-
Compositional and topological determinants of a physiological Ashwell–Morell receptor ligand Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
John Hintze, Robert Fraumeni, Noortje de Haan, Rebecca L. Miller, Mayank Saraswat, Zhang Yang, Henrik Clausen, Jamey D. MarthThe hepatocyte Ashwell–Morell receptor (AMR) is the prototypical mammalian lectin and the first cell receptor isolated. This recycling endocytic receptor of the plasma membrane determines the concentrations of hundreds of circulating glycoproteins in the blood and plays important roles in host responses to and outcomes of infection. The compositional and topological determinants of a physiological
-
In situ generated hydrogen-bonding microenvironment in functionalized MOF nanosheets for enhanced CO 2 electroreduction Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Ge Yang, Jiajia Huang, Weizhi Gu, Zhongyuan Lin, Qingyu Wang, Rong Kang, Jing-Yao Liu, Zhihu Sun, Xusheng Zheng, Long Jiao, Hai-Long JiangThe microenvironment around catalytic sites plays crucial roles in enzymatic catalysis while its precise control in heterogeneous catalysts remains challenging. Herein, the coordinatively unsaturated metal nodes of Hf-based metal-organic framework nanosheets are simultaneously codecorated with catalytically active Co(salen) units and adjacent pyridyl-substituted alkyl carboxylic acids via a post modification
-
New Advanced Placement course designed to broaden access promotes participation and demographic diversity in computer science education Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Daniela Ganelin, Thomas S. DeeAdvanced Placement (AP) provides college-level courses to over 1 million US secondary students annually. Black, Hispanic, and female students have historically been underrepresented in AP Computer Science (CS). A new, broadly focused course—AP CS Principles—launched nationally in 2016–17 with the goal of increasing student participation and diversity. We examine its effects on AP CS participation.
-
Biallelic variants in the conserved ribosomal protein chaperone gene PDCD2 are associated with hydrops fetalis and early pregnancy loss Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Anne-Marie Landry-Voyer, Tess Holling, Emily K. Mis, Zabih Mir Hassani, Malik Alawi, Weizhen Ji, Lauren Jeffries, Kerstin Kutsche, François Bachand, Saquib A. LakhaniPregnancy loss is a major problem in clinical medicine with devastating consequences for families. Next generation sequencing has improved our ability to identify underlying molecular causes, though over half of all cases lack a clear etiology. Here, we began with clinical evaluation combined with exome sequencing across independent families to identify bi-allelic candidate genetic variants in the
-
Neddylation modification stabilizes LC3B by antagonizing its ubiquitin-mediated degradation and promoting autophagy in skin Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Linlin Xu, Xinxing Lyu, Yibo Wang, Li Ni, Pin Li, Piao Zeng, Qixia Wang, Yunhao Chang, Chenglong Pan, Qingxia Hu, Shuhong Huang, Ningning DangThe Atg8-family proteins, including LC3B (microtubule-associated protein 1 light chain 3 beta), are pivotal for key steps in the autophagy process. Proper regulation of LC3B homeostasis is essential for its function. Although LC3B is modulated by various posttranslational modifications (PTMs), the impact of these modifications on LC3B protein homeostasis remains unclear. Neddylation, a recently identified
-
Inactivation of microglial LXRβ in early postnatal mice impairs microglia homeostasis and causes long-lasting cognitive dysfunction Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Keyi Lv, Yi Luo, Tianyao Liu, Meiling Xia, Hong Gong, Dandan Zhang, Xuan Chen, Xin Jiang, Yulong Liu, Jiayin Liu, Yulong Cai, Per Antonson, Margaret Warner, Haiwei Xu, Jan-Åke Gustafsson, Xiaotang FanMicroglia, the largest population of brain immune cells, play an essential role in regulating neuroinflammation by removing foreign materials and debris and in cognition by pruning synapses. Since liver X receptor β (LXRβ) has been identified as a regulator of microglial homeostasis, this study examined whether its removal from microglia affects neuroinflammation and cognitive function. We used a cell-specific
-
Proximity-activated DNA scanning encoded sequencing for massive access to membrane proteins nanoscale organization Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Xueqi Zhao, Yue Zhao, Zhu Li, Huan Liu, Wenhao Fu, Feng Chen, Ying Sun, Daqian Song, Chunhai Fan, Yongxi ZhaoCellular structure maintenance and function regulation critically depend on the composition and spatial distribution of numerous membrane proteins. However, current methods face limitations in spatial coverage and data scalability, hindering the comprehensive analysis of protein interactions in complex cellular nanoenvironment. Herein, we introduce p roximity- a ctivated D NA s canning e ncoded sequencing
-
ZmGCT1/2 negatively regulate drought tolerance in maize by inhibiting ZmSLAC1 to maintain guard cell turgor Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Zhenkai Feng, Huiying Li, Zhihui Sun, Jinkui Cheng, Deping Hua, Yu Wang, Junsheng Qi, Shuhua Yang, Zhizhong GongStomata, which are essential for the exchange of CO 2 and water vapor between plant leaves and the atmosphere, are regulated by a variety of environmental and internal factors. In this study, we identified and characterized two genes, Guard Cell Turgor Maintaining 1 ( GCT1 ) and its closest homolog GCT2 , which encode rapidly accelerated fibrosarcoma (RAF)-like protein kinases that play a critical
-
SRP19 and the protein secretion machinery is a targetable vulnerability in cancers with APC loss Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Xinqi Xi, Ling Liu, Natasha Tuano, Julien Tailhades, Dmitri Mouradov, Jason Steen, Oliver Sieber, Max Cryle, Tu Nguyen-Dumont, Eva Segelov, Joseph RosenbluhLoss of the tumor suppressor gene (TSG) Adenomatous Polyposis Coli ( APC ) is a hallmark event in colorectal cancers. Since it is not possible to directly target a TSG, no treatment options are available for these patients. Here, we identify SRP19 and the protein secretion machinery as a unique vulnerability in cancers with heterozygous APC loss. SRP19 is located 15 kb from APC and is almost always
-
A computational analysis of lexical elaboration across languages Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Temuulen Khishigsuren, Terry Regier, Ekaterina Vylomova, Charles KempClaims about lexical elaboration (e.g. Mongolian has many horse-related terms) are widespread in the scholarly and popular literature. Here, we show that computational analyses of bilingual dictionaries can be used to test claims about lexical elaboration at scale. We validate our approach by introducing BILA, a dataset including 1,574 bilingual dictionaries, and showing that it confirms 147 out of
-
ID3 enhances PD-L1 expression by restructuring MYC to promote colorectal cancer immune evasion Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Chuanzhong Huang, Ling Wang, Changhua Zhuo, Wenxin Chen, Hongmei Fan, Yilin Hong, Yu Zhang, Dongmei Zhou, Wansong Lin, Lingyu Zhang, Jingjing Zhao, Shuping Chen, Chundong Yu, Yunbin YeThe inhibitor of DNA binding protein ID3 has been associated with the progression of colorectal cancer (CRC). Despite its significance, its specific role in the immune evasion strategies utilized by CRC remains unclear. RNA-seq analysis revealed that ID3 was positively associated with the PD-L1 immune checkpoint. We further demonstrated that tumor cell–expressed ID3 enhanced PD-L1 expression, suppressed
-
On Hodge polynomials for nonalgebraic complex manifolds Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-10
Ludmil Katzarkov, Kyoung-Seog Lee, Ernesto Lupercio, Laurent MeerssemanHodge theory is pivotal in studying algebraic varieties’ intricate geometry and topology: it provides essential insights into their structure. The Hodge decomposition theorem establishes a profound link between the geometry of varieties and their cohomology groups, helping to understand their underlying properties. Moreover, Hodge theory was crucial at the inception of the field of mirror symmetry
-
-
The importance of playing the long game when it comes to pandemic surveillance. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Freya M Shearer,Marc Lipsitch -
Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatid Vickermania Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Evgeny S. Gerasimov, Dmitry A. Afonin, Ingrid Škodová-Sveráková, Andreu Saura, Natália Trusina, Ondřej Gahura, Alexandra Zakharova, Anzhelika Butenko, Peter Baráth, Anton Horváth, Fred R. Opperdoes, David Pérez-Morga, Sara L. Zimmer, Julius Lukeš, Vyacheslav YurchenkoThe trypanosomatid flagellates possess in their single mitochondrion a highly complex kinetoplast (k)DNA, which is composed of interlocked circular molecules of two types. Dozens of maxicircles represent a classical mitochondrial genome, and thousands of minicircles encode guide (g)RNAs, which direct the processive and essential uridine insertion/deletion messenger RNA (mRNA) editing of maxicircle
-
Two transcription factors play critical roles in mediating epigenetic regulation of fruit ripening in tomato Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Qingfeng Niu, Yaping Xu, Huan Huang, Linzhu Li, Dengguo Tang, Siqun Wu, Ping Liu, Ruie Liu, Yu Ma, Bo Zhang, Jian-Kang Zhu, Zhaobo LangDNA methylation regulates fruit ripening in tomato, and disruption of the DNA demethylase DEMETER-LIKE 2 (DML2) results in genome-wide DNA hypermethylation and impaired ripening. We report here that the transcription factors Ripening Inhibitor (RIN) and FRUITFULL 1 (FUL1) play critical roles in mediating the effect of DNA methylation on tomato fruit ripening. RIN and FUL1 are silenced in dml2 mutant
-
Chemically active wetting Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Susanne Liese, Xueping Zhao, Christoph A. Weber, Frank JülicherWetting of liquid droplets on passive surfaces is ubiquitous in our daily lives, and the governing physical laws are well understood. When surfaces become active, however, the governing laws of wetting remain elusive. Here, we propose chemically active wetting as a class of active systems where the surface is active due to a binding process that is maintained away from equilibrium. We derive the corresponding
-
Perturbing nuclear glycosylation in the mouse preimplantation embryo slows down embryonic development Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Sara Formichetti, Joana B. Serrano, Urvashi Chitnavis, Agnieszka Sadowska, Na Liu, Ana Boskovic, Matthieu BoulardThe main form of intracellular protein glycosylation (O-GlcNAc) is reversible and has been mapped on thousands of cytoplasmic and nuclear proteins, including RNA polymerase II, transcription factors, and chromatin modifiers. The O-GlcNAc modification is catalyzed by a single enzyme known as O-GlcNAc Transferase, that is required for mammalian early development. Yet, neither the regulatory function
-
NAL1 forms a molecular cage to regulate FZP phase separation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Ling-Yun Huang, Ting-Ting Wang, Peng-Tao Shi, Ze-Yu Song, Wei-Fei Chen, Na-Nv Liu, Xia Ai, Hai-Hong Li, Xi-Miao Hou, Li-Bing Wang, Kun-Ming Chen, Stephane Rety, Xu-Guang XiNARROW LEAF 1 ( NAL1 ), originally identified for its role in shaping leaf morphology, plant architecture, and various agronomic traits in rice, has remained enigmatic in terms of the molecular mechanisms governing its multifaceted functions. In this study, we present a comprehensive structural analysis of NAL1 proteins, shedding light on how NAL1 regulates the phase separation of its physiological
-
Roquin exhibits opposing effects on RNA stem-loop stability through its two ROQ domain binding sites Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Jan-Niklas Tants, Andreas Walbrun, Lucas Kollwitz, Katharina Friedrich, Matthias Rief, Andreas SchlundtThe interaction of mRNA and regulatory proteins is critical for posttranscriptional control. For proper function, these interactions, as well as the involved protein and RNA structures, are highly dynamic, and thus, mechanistic insights from structural biology are challenging to obtain. In this study, we employ a multifaceted approach combining single-molecule force spectroscopy (SMFS) with NMR spectroscopy
-
Exploring RNA destabilization mechanisms in biomolecular condensates through atomistic simulations Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Matteo Boccalini, Yelyzaveta Berezovska, Giovanni Bussi, Matteo Paloni, Alessandro BarducciBiomolecular condensates are currently recognized to play a key role in organizing cellular space and in orchestrating biochemical processes. Despite an increasing interest in characterizing their internal organization at the molecular scale, not much is known about how the densely crowded environment within these condensates affects the structural properties of recruited macromolecules. Here, we adopted
-
Glassy ionogels with high compressibility and strength for impact protection Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Jiayu Wang, Shilong Zhang, Lingling Li, Xiaoliang Wang, Jiaofeng Xiong, Qingning Li, Weizheng Li, Feng YanSolvents within gels enhance the mobility of polymer chain segments while concurrently diminishing interchain interactions, thereby facilitating the ductility of glassy polymers at the cost of their mechanical strength. Here, we develop a solvent toughening strategy for the preparation of highly compressible and high-strength ionogels in the glassy state. This approach leverages the synergistic effects
-
On the hidden transient interphase in metal anodes: Dynamic precipitation controls electrochemical interfaces in batteries Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Stephen T. Fuller, J.-X. Kent ZhengThe solid–electrolyte interphase (SEI) formed on a battery electrode has been a central area of research for decades. This structurally complex layer profoundly impacts the electrochemical deposition morphology and stability of metal anodes. Departing from conventional approaches, we investigate metal dissolution—the reverse reaction of deposition—in battery environments using a state-of-the-art electroanalytical
-
Substrate stress relaxation regulates monolayer fluidity and leader cell formation for collectively migrating epithelia Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Frank Charbonier, Junqin Zhu, Raleigh Slyman, Cole Allan, Ovijit ChaudhuriCollective migration of epithelial tissues is a critical feature of developmental morphogenesis and tissue homeostasis. Coherent motion of cell collectives requires large-scale coordination of motion and force generation and is influenced by mechanical properties of the underlying substrate. While tissue viscoelasticity is a ubiquitous feature of biological tissues, its role in mediating collective
-
MDA5 ISGylation is crucial for immune signaling to control viral replication and pathogenesis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Lucky Sarkar, GuanQun Liu, Dhiraj Acharya, Junji Zhu, Zuberwasim Sayyad, Michaela U. GackThe posttranslational modification (PTM) of innate immune sensor proteins by ubiquitin or ubiquitin-like proteins is crucial for regulating antiviral host responses. The cytoplasmic dsRNA receptor melanoma differentiation-associated protein 5 (MDA5) undergoes several PTMs including ISGylation within its first caspase activation and recruitment domain (CARD), which promotes MDA5 signaling. However,
-
FLIP L permits apoptotic and inflammatory signaling and inhibits necroptosis in mice without Caspase-8 oligomerization Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Jeremy J. P. Shaw, Cliff Guy, Bart Tummers, Douglas R. GreenCaspase-8 signaling has proapoptotic, antinecroptotic, and proinflammatory signaling roles dependent on interaction with the adapter molecule FADD, oligomerization, and autocleavage. Previously, a Caspase-8 binding partner cFLIP L (FLIP, encoded by Cflar ) was shown to prevent Caspase-8-dependent apoptosis, but permit Caspase-8-dependent inhibition of necroptosis. We sought to explore the role of FLIP
-
Academic achievement helps coordination on mutually advantageous outcomes Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Isabelle Brocas, Juan D. CarrilloThis study examines the relationship between academic achievement and strategic ability to coordinate among middle school students. We designed an experimental framework using repeated asymmetric Battle of the Sexes and Hawk–Dove games, to explore how cognitive and social skills related to academic success influence behavior. A total of 132 students participated, divided into groups of high and low
-
Disease resistance is more costly at younger ages: An explanation for the maintenance of juvenile susceptibility in a wild plant Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Samuel P. Slowinski, Allyson K. Kido, Laura W. Alexander, Andrea H. Shirdon, Emily L. BrunsHigh juvenile susceptibility drives infectious disease epidemics across kingdoms, yet the evolutionary mechanisms that maintain this susceptibility are unclear. We tested the hypothesis that juvenile susceptibility is maintained by high costs of resistance by quantifying the genetic correlation between host fitness and age-specific innate resistance to a fungal pathogen in a wild plant. We separately
-
DNA bending mediated by ORC is essential for replication licensing in budding yeast Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Wai Hei Lam, Daqi Yu, Qiongdan Zhang, Yuhan Lin, Ningning Li, Jian Li, Yue Wu, Yingyi Zhang, Ning Gao, Bik Kwoon Tye, Yuanliang Zhai, Shangyu DangIn eukaryotes, the origin recognition complex (ORC) promotes the assembly of minichromosome maintenance 2 to 7 complexes into a head-to-head double hexamer at origin DNA in a process known as replication licensing. In this study, we present a series of cryoelectron microscopy structures of yeast ORC mutants in complex with origin DNA. We show that Orc6, the smallest subunit of ORC, utilizes its transcription
-
Colony pattern multistability emerges from a bistable switch Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Pan Chu, Jingwen Zhu, Zhixin Ma, Xiongfei FuMicrobial colony development hinges upon a myriad of factors, including mechanical, biochemical, and environmental niches, which collectively shape spatial patterns governed by intricate gene regulatory networks. The inherent complexity of this phenomenon necessitates innovative approaches to comprehend and compare the mechanisms driving pattern formation. Here, we unveil the multistability of bacterial
-
Monomers and short oligomers of human RAD52 promote single-strand annealing Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Maria A. Kharlamova, Manish S. Kushwah, Tobias J. Jachowski, Sivaraman Subramaniam, Viktor Schiff, A. Francis Stewart, Philipp Kukura, Erik SchäfferGenome maintenance and stability rely on the repair of DNA double-strand breaks. Breaks can be repaired via the single-strand-annealing pathway mediated by the protein RAD52. RAD52 oligomerizes to rings that are thought to promote annealing. However, rings have only been observed at micromolar concentrations at which annealing activity is impaired. Thus, it is unclear which oligomeric form is responsible
-
Transparency by Chinese cities reduces pollution violations and improves air quality Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Mengdi Liu, Mark T. Buntaine, Sarah E. Anderson, Bing ZhangWe provide national-scale experimental evidence from China showing that transparency by local governments improves the management of air pollution. Governments that perform better have more reasons to be transparent, making the causal relationship between transparency and policy outcomes difficult to disentangle. In 2015, we randomly assigned municipal governments in China to a high-visibility, public
-
The histone variant H2A.W restricts heterochromatic crossovers in Arabidopsis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-09
Namil Son, Heejin Kim, Jaeil Kim, Jihye Park, Dohwan Byun, Sang-jun Park, Hyein Kim, Yeong Mi Park, Pierre Bourguet, Frédéric Berger, Kyuha ChoiMeiotic crossovers rearrange allele combinations and create offspring diversity. Crossovers occur nonrandomly along chromosomes, predominantly in distal euchromatin and less in pericentromeric heterochromatin marked with histone H3 lysine 9 dimethylation (H3K9me2) and the H2A variant H2A.W in Arabidopsis thaliana . Loss of H3K9me2 increases heterochromatic crossovers, but how H2A.W affects crossover
-
Conformational signatures induced by ubiquitin modification in the amyloid-forming tau repeat domain Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Giovanna Viola, Daniele Trivellato, Mikko Laitaoja, Janne Jänis, Isabella C. Felli, Mariapina D’Onofrio, Luca Mollica, Gabriele Giachin, Michael AssfalgPosttranslational modifications can critically affect conformational changes of amyloid-forming proteins. Ubiquitination of the microtubule-associated tau protein, an intrinsically disordered biomolecule, has been proposed to influence the formation of filamentous deposits in neurodegenerative conditions. Given the reported link between aggregation propensity and intrinsic structural preferences (e
-
The fruit fly, Drosophila melanogaster , as a microrobotics platform Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Kenichi Iwasaki, Charles Neuhauser, Chris Stokes, Aleksandr RayshubskiyEngineering small autonomous agents capable of operating in the microscale environment remains a key challenge, with current systems still evolving. Our study explores the fruit fly, Drosophila melanogaster , a classic model system in biology and a species adept at microscale interaction, as a biological platform for microrobotics. Initially, we focus on remotely directing the walking paths of fruit
-
Structure of a Gcn2 dimer in complex with the large 60S ribosomal subunit Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Helge Paternoga, Lu Xia, Lyudmila Dimitrova-Paternoga, Sihan Li, Liewei L. Yan, Malte Oestereich, Sergo Kasvandik, Ankanahalli N. Nanjaraj Urs, Bertrand Beckert, Tanel Tenson, Hani Zaher, Toshifumi Inada, Daniel N. WilsonThe integrated stress response (ISR) is a central signaling network that enables eukaryotic cells to respond to a variety of different environmental stresses. Such stresses cause ribosome collisions that lead to activation of the kinase Gcn2, resulting in the phosphorylation and inactivation of eukaryotic initiation factor 2 and thereby promoting selective translation of mRNAs to restore homeostasis
-
Probing ultraweak in-plane magnetic anisotropy within a two-dimensional layered antiferromagnet Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Yijie Fan, Yihong Xu, Renji Bian, Ruan Zhang, Junning Mei, Jiaxin Wu, Binghe Xie, Shuangxing Zhu, Yu Chen, Feifan Gu, Ying Liu, Takashi Taniguchi, Kenji Watanabe, Fucai Liu, Xinghan CaiMagnetic anisotropy plays a crucial role in determining the critical behavior and phase transitions in two-dimensional magnetic systems. It is also required for the design of thin-film spintronic devices. Despite its significance, sensing extremely weak anisotropy has proven challenging in van der Waals antiferromagnetic/ferrimagnetic materials. Here, we first employ simulations of micromagnetic energy
-
Activity of spinal RORβ neurons is related to functional improvements following combination treatment after complete SCI Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Nicholas J. Stachowski, Jaimena H. Wheel, Shayna Singh, Sebastian J. Atoche, Lihua Yao, D. Leonardo Garcia-Ramirez, Simon F. Giszter, Kimberly J. DoughertyVarious strategies targeting spinal locomotor circuitry have been associated with functional improvements after spinal cord injury (SCI). However, the neuronal populations mediating beneficial effects remain largely unknown. Using a combination therapy in a mouse model of complete SCI, we show that virally delivered brain-derived neurotrophic factor (BDNF) (AAV-BDNF) activates hindlimb stepping and
-
Cortical scaling of the neonatal brain in typical and altered development Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Alexandra F. Bonthrone, Daniel Cromb, Andrew Chew, Barat Gal-Er, Christopher Kelly, Shona Falconer, Tomoki Arichi, Kuberan Pushparajah, John Simpson, Mary A. Rutherford, Joseph V. Hajnal, Chiara Nosarti, A. David Edwards, Jonathan O’Muircheartaigh, Serena J. CounsellTheoretically derived scaling laws capture the nonlinear relationships between rapidly expanding brain volume and cortical gyrification across mammalian species and in adult humans. However, the preservation of these laws has not been comprehensively assessed in typical or pathological brain development. Here, we assessed the scaling laws governing cortical thickness (CT), surface area (SA), and cortical
-
Structural basis for immune cell binding of Fusobacterium nucleatum via the trimeric autotransporter adhesin CbpF Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Gian Luca Marongiu, Uwe Fink, Felix Schöpf, Andreas Oder, Jens Peter von Kries, Daniel RodererFusobacterium nucleatum (Fn), a commensal in the human oral cavity, is overrepresented in the colon microbiota of colorectal cancer (CRC) patients and is linked to tumor chemoresistance, metastasis, and a poor therapeutic prognosis. Fn produces numerous adhesins that mediate tumor colonization and downregulation of the host’s antitumor immune response. One of these, the trimeric autotransporter adhesin
-
Alpha-tubulin tails regulate axoneme differentiation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Ming Li, Zhe Chen, Zhengyang Guo, Yang Wang, Yongping Chai, Wei Li, Guangshuo OuThe tubulin tail is a key element for microtubule (MT) functionality, but the functional redundancy of tubulin genes complicates the genetic determination of their physiological functions. Here, we removed the C-terminal tail of five alpha- and four beta-tubulin genes in the C. elegans genome. Sensory cilia typically exhibit an axoneme that longitudinally differentiates into a middle segment with doublet
-
Structural and functional characterization of the brain-specific dynamin superfamily member RNF112 Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Ya-Ting Zhong, Li-Li Huang, Kangning Li, Bingke Yang, Xueting Ye, Hao-Ran Zhong, Bing Yu, Menghan Ma, Yuerong Yuan, Yang Meng, Runfeng Pan, Haiqing Zhang, Lijun Shi, Yunyun Wang, Ruijun Tian, Song Gao, Xin BianMost members of the dynamin superfamily of large guanosine triphophatases (GTPases) have an ability to remodel membranes in response to guanosine triphosphate (GTP) hydrolysis. Ring Finger Protein 112 (RNF112) (ZNF179/neurolastin) is a recently identified brain-specific dynamin-like protein possessing a really interesting new gene (RING) finger domain. Despite its essential role as an E3 ligase in
-
Maximizing underwater energy harvesting efficiency using flexible solar cells: A pathway to sustainable ocean power Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Haoliang Bai, Tonghui Lu, Wenzhuo Liu, Xianglin Li, Wenhao Lv, Song LvPhotovoltaic technology has emerged as a key candidate for powering underwater devices. However, traditional solar cells face limitations in real marine environments. Flexible solar cells offer new possibilities for underwater energy harvesting. This study identifies the optimal bandgap and depth for flexible underwater solar cells through detailed balance calculations and experiments. We also established
-
Multiplexing of cognitive encoding by oculomotor networks leads to incidental gaze shifts Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Matthew C. Rosen, David J. FreedmanHumans and other animals are adept at learning to perform cognitively demanding behavioral tasks. Neurophysiological recordings in nonhuman primates during such tasks find that the requisite cognitive variables are encoded strongly in core oculomotor brain regions. Here, we assembled a large dataset—11 monkeys performing an abstract visual categorization task, surveyed across more than 1,000 neural
-
Seismic fault slip at depths simulated by high-velocity friction experiments under hydrothermal conditions Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-08
Lu Yao, Wei Feng, Chiara Cornelio, Toshihiko Shimamoto, Shengli Ma, Giulio Di ToroSeismic fault slip and rupture propagation often occur at crustal depths in the presence of hot and pressurized aqueous fluids (i.e., hydrothermal conditions). Previous experiments investigated fault frictional properties under hydrothermal conditions, but at imposed subseismic fault slip velocities ( V ~μm/s). Here, using a rotary-shear apparatus equipped with a hydrothermal pressure vessel, we study