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Diet-regulated transcriptional plasticity of plant parasites in plant-mutualist environments. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
M Willow H Maxwell,Barry E Causier,Jasper Chippendale,James R Ault,Chris A BellCrop pathogens often lack exclusive access to their host and must interact with plants concurrently engaged with numerous other symbionts. Here, we demonstrate that the colonization of hosts by plant-mutualistic mycorrhizal fungi can indirectly induce transcriptional responses of a major plant parasite, the nematode Globodera pallida, via a modified host resource profile. A shift in the resource profile
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St3gal5-mediated sialylation of glyco-CD177 on neutrophils restricts neuroinflammation following CNS injury. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Tingting Huang,Wanqing Xie,Yunlu Guo,Yan Li,Jiemin Yin,Xia Jin,Yezhi Ma,Yueman Zhang,Dan Huang,Caiyang Chen,Xin Wang,Ziyu Zhu,Yu Gan,Arthur Liesz,Weifeng Yu,Junying Yuan,Peiying LiNeutrophils are the most abundant circulating leukocyte population that play critical roles in neuroinflammation following central nervous system (CNS) injury. CD177, a glycoprotein on neutrophils, is emerging as an important immune regulator which can fundamentally affect multiple human inflammatory diseases. However, the role and regulatory mechanism of CD177 glycobiology of neutrophils in neuroinflammation
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Exotic mechanical properties enabled by countersnapping instabilities. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Paul Ducarme,Bart Weber,Martin van Hecke,Johannes T B OverveldeMechanical snapping instabilities are leveraged by natural systems, metamaterials, and devices for rapid sensing, actuation, and shape changes, as well as to absorb impact. In all current forms of snapping, shapes deform in the same direction as the exerted forces, even though there is no physical law that dictates this. Here, we realize countersnapping mechanical structures that respond in the opposite
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Elevated brain manganese induces motor disease by upregulating the kynurenine pathway of tryptophan metabolism. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Anna S Warden,Nishant Sharma,Steven Hutchens,Chunyi Liu,Noah R Haggerty,Kerem C Gurol,Thomas Jursa,Donald R Smith,Roy Dayne Mayfield,Somshuvra MukhopadhyayElevated brain levels of the essential metals manganese (Mn), copper, or iron induce motor disease. However, mechanisms of metal-induced motor disease are unclear and treatments are lacking. Elucidating the mechanisms of Mn-induced motor disease is particularly important because occupational and environmental Mn overexposure is a global public health problem. To address this, here we combined unbiased
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RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Ololade Folajimi Awoyomi,Choco Michael Gorospe,Biswajit Das,Pradeep Mishra,Sushma Sharma,Olena Diachenko,Anna Karin Nilsson,Phong Tran,Paulina H Wanrooij,Andrei ChabesMitochondrial DNA (mtDNA) replication requires a steady supply of deoxyribonucleotides (dNTPs), synthesized de novo by ribonucleotide reductase (RNR). In nondividing cells, RNR consists of RRM1 and RRM2B subunits. Mutations in RRM2B cause mtDNA depletion syndrome, linked to muscle weakness, neurological decline, and early mortality. The impact of RRM2B deficiency on dNTP pools in nondividing tissues
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Functional redundancy in the toxic pathway of Bt protein Cry1Ab, but not Cry1Fa, against the Asian corn borer. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Xingliang Wang,Yujin Yue,Yuqian Zhai,Falong Wang,Xuna Zhuang,Shuwen Wu,Yihua Yang,Bruce E Tabashnik,Yidong WuCrops genetically engineered to produce insecticidal proteins from the bacterium Bacillus thuringiensis (Bt) have been used extensively to control some major crop pests, but their benefits decrease when pests evolve resistance. Better understanding of the genetic basis of resistance is needed to effectively monitor, manage, and counter pest resistance to Bt crops. Resistance to Bt proteins in at least
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Dynamics of two distinct memory interactions during water seeking in Drosophila. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Wang-Pao Lee,Meng-Hsuan Chiang,Yi-Ping Chao,Ying-Fong Wang,Yan-Lin Chen,Yu-Chun Lin,Shan-Yun Jenq,Jun-Wei Lu,Tsai-Feng Fu,Jia-Yu Liang,Kai-Cing Yang,Li-Yun Chang,Tony Wu,Chia-Lin WuForming and forgetting memories shape our self-awareness and help us face future challenges. Therefore, understanding how memories are formed and how different memories interact in the brain is important. Previous studies have shown that thirsty flies sense humidity through ionotropic receptors, which help them locate water sources. Here, we showed that thirsty flies can be trained to associate specific
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Semaphorin 6A phase separation sustains a histone lactylation-dependent lactate buildup in pathological angiogenesis. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Ya Ma,Zhuyi Zhang,Xiaolian Cao,Dianlei Guo,Shuting Huang,Lijing Xie,Mingjuan Wu,Junru Li,Chenxin Li,Yu Chu,Shuxin Jiang,Yu Hao,Can Wang,Xiali Zhong,Rong Ju,Feng Zhang,Chunqiao Liu,Yanhong WeiIschemic retinal diseases are major causes of blindness worldwide and are characterized by pathological angiogenesis. Epigenetic alterations in response to metabolic shifts in endothelial cells (ECs) suffice to underlie excessive angiogenesis. Lactate accumulation and its subsequent histone lactylation in ECs contribute to vascular disorders. However, the regulatory mechanism of establishing and sustaining
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Pulse timing dominates binaural hearing with cochlear implants. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Jan W H Schnupp,Sarah Buchholz,Alexa N Buck,Henrike Budig,Lakshay Khurana,Nicole Rosskothen-KuhlAlthough cochlear implants (CIs) provide valuable auditory information to more than one million profoundly deaf patients, these devices remain inadequate in conveying fine timing cues. Early deaf patients in particular struggle to use interaural time differences (ITDs) for spatial hearing and auditory scene analysis. Why CI patients experience these limitations remains controversial. One possible explanation
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Receptor kinase pathway signal tuning through a nontranscriptional incoherent feedforward loop. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Qian Wang,Yeon Hee Kang,Christian S HardtkeCellular signaling processes can elicit powerful responses and may need to be amplified to be efficient or dampened to prevent overstimulation. Therefore, they often involve autoregulatory feedbacks. Receptor kinase signaling pathways are abundant in plants, where they convey the presence of both exogenous and endogenous ligands. Among them, endogenous CLAVATA3/EMBRYO SURROUNDING REGION (CLE) peptide
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Psychological impacts of climate change on US youth. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Ans Vercammen,Britt Wray,Yoshika S Crider,Gary Belkin,Emma L LawranceAwareness of the threats of climate change is causing distress in increasingly documented ways, with youth particularly affected. Experiences such as climate distress and eco-anxiety have implications for the health and well-being of societies and economies, including individuals' mental health and future planning, as well as their agency beliefs. Here, we show in a large sample of US youth (n = 2
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Verapamil and its metabolite norverapamil inhibit the Mycobacterium tuberculosis MmpS5L5 efflux pump to increase bedaquiline activity. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Adam J Fountain,Natalie J E Waller,Chen-Yi Cheung,William Jowsey,Michael T Chrisp,Mark Troll,Paul H Edelstein,Gregory M Cook,Matthew B McNeil,Lalita RamakrishnanBedaquiline is the cornerstone of a new regimen for the treatment of drug-resistant tuberculosis. However, its clinical use is threatened by the emergence of bedaquiline-resistant strains of Mycobacterium tuberculosis. Bedaquiline targets mycobacterial ATP synthase but the predominant route to clinical bedaquiline resistance is via upregulation of the MmpS5L5 efflux pump due to mutations that inactivate
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Existential risk narratives about AI do not distract from its immediate harms. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
Emma Hoes,Fabrizio GilardiThere is broad consensus that AI presents risks, but considerable disagreement about the nature of those risks. These differing viewpoints can be understood as distinct narratives, each offering a specific interpretation of AI's potential dangers. One narrative focuses on doomsday predictions of AI posing long-term existential risks for humanity. Another narrative prioritizes immediate concerns that
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Profile of John Hopfield and Geoffrey Hinton: 2024 Nobel laureates in physics. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-17
James L McClellandThe 2024 Nobel Prize in Physics recognizes breakthroughs contributing to the emergence of a new understanding of the computations that underlie human intelligence, with profound implications for artificially intelligent systems. John Hopfield and Geoffrey Hinton played seminal roles in these breakthroughs. I begin by characterizing the scientific context in which the new understanding of intelligence
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Is killing animals an effective way to regulate populations? Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Amy McDermott -
Regulatory mimicry of cyclin-dependent kinases by a conserved herpesvirus protein kinase Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Naoto Koyanagi, Kowit Hengphasatporn, Akihisa Kato, Moeka Nobe, Kosuke Takeshima, Yuhei Maruzuru, Katsumi Maenaka, Yasuteru Shigeta, Yasushi KawaguchiHerpesviruses encode conserved protein kinases (CHPKs) that target cellular cyclin-dependent kinase (CDK) phosphorylation sites; thus, they are termed viral CDK-like kinases. Tyrosine 15 in the GxGxxG motifs of CDK1 and CDK2, whose phosphorylation down-regulates their catalytic activities, is conserved in the corresponding motifs of CHPKs. We found that CHPK UL13, the corresponding Tyr-162 in herpes
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Rolling two-dimensional covalent organic framework (COF) sheets into one-dimensional electronic and proton-conductive nanotubes Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Zhuowei Li, Rajendra Prasad Paitandi, Yusuke Tsutsui, Wakana Matsuda, Masaki Nobuoka, Bin Chen, Samrat Ghosh, Takayuki Tanaka, Masayuki Suda, Tong Zhu, Hiroshi Kageyama, Yoshihiro Miyake, Hiroshi Shinokubo, Makito Takagi, Tomomi Shimazaki, Masanori Tachikawa, Katsuaki Suzuki, Hironori Kaji, Yasunobu Ando, Takahiro Ezaki, Shu SekiMimicking the interconvertible carbon allotropes of 2-dimensional (2D) graphene and 1-dimensional (1D) carbon nanotubes (CNTs), herein we report the in situ transformation of 2D π-conjugated covalent organic frameworks (COFs) sheet into 1D nanotubular structures via self-assembly the sheets at solvent interfaces. The facile “roll-sheets” self-assembly resulted in coaxial nanotubes with uniform cross-sectional
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The “don’t eat me” signal CD47 is associated with microglial phagocytosis defects and autism-like behaviors in 16p11.2 deletion mice Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Jun Ju, Yifan Pan, Xinyi Yang, Xuanyi Li, Jinghong Chen, Shiyu Wu, Sheng-Tao HouVarious pathological characteristics of autism spectrum disorder (ASD) stem from abnormalities in brain resident immune cells, specifically microglia, to prune unnecessary synapses or neural connections during early development. Animal models of ASD exhibit an abundance of synapses in different brain regions, which is strongly linked to the appearance of ASD behaviors. Overexpression of CD47 on neurons
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Peripheral CD4 + T cells mediate the destructive effects of maternal separation on prefrontal myelination and cognitive functions Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Rui Xiong, Yinyin Hu, Menghan Wang, Ting Han, Yuying Hu, Chaolin Ma, Baoming LiMaternal separation (MS), a chronic stress event in early life, impairs myelination in the prefrontal cortex (PFC) and leads to PFC cognitive disorders. It remains largely unclear how such deficits are mediated. Here, we show that peripheral CD4 + T cells play an essential role in mediating the destructive effects of MS on medial prefrontal cortical (mPFC) myelination and cognitive functions in mice
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The POLγ Y951N patient mutation disrupts the switch between DNA synthesis and proofreading, triggering mitochondrial DNA instability Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Josefin M. E. Forslund, Tran V. H. Nguyen, Vimal Parkash, Andreas Berner, Steffi Goffart, Jaakko L. O. Pohjoismäki, Paulina H. Wanrooij, Erik Johansson, Sjoerd WanrooijMitochondrial DNA (mtDNA) stability, essential for cellular energy production, relies on DNA polymerase gamma (POLγ). Here, we show that the POLγ Y951N disease-causing mutation induces replication stalling and severe mtDNA depletion. However, unlike other POLγ disease-causing mutations, Y951N does not directly impair exonuclease activity and only mildly affects polymerase activity. Instead, we found
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A hydrophobic photouncaging reaction to profile the lipid droplet interactome in tissues Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Di Shen, Qun Zhao, Huaiyue Zhang, Ci Wu, Hao Jin, Kun Guo, Rui Sun, Hengke Guo, Qi Zhao, Huan Feng, Xuepeng Dong, Zhenming Gao, Lihua Zhang, Yu LiuMost bioorthogonal photouncaging reactions preferentially occur in polar environments to accommodate biological applications in the aqueous cellular milieu. However, they are not precisely designed to chemically adapt to the diverse microenvironments of the cell. Herein, we report a hydrophobic photouncaging reaction with tailored photolytic kinetics toward solvent polarity. Structural modulations
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Quantifying the impact of biobanks and cohort studies Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Rodrigo Dorantes-Gilardi, Kerry L. Ivey, Lauren Costa, Rachael Matty, Kelly Cho, John Michael Gaziano, Albert-László BarabásiBiobanks advance biomedical and clinical research by collecting and offering data and biological samples for numerous studies. However, the impact of these repositories varies greatly due to differences in their purpose, scope, governance, and data collected. Here, we computationally identified 2,663 biobanks and their textual mentions in 228,761 scientific articles, 16,210 grants, 15,469 patents,
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A single mutation in an enteric virus alters tropism and sensitivity to microbiota Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Andrea K. Erickson, Danica M. Sutherland, Olivia L. Welsh, Robert W. Maples, Terence S. Dermody, Julie K. PfeifferMany enteric viruses benefit from the microbiota. In mice, microbiota depletion reduces infection by noroviruses and picornaviruses. However, Reovirales viruses are outliers among enteric viruses. Rotavirus infection is inhibited by bacteria, and we determined that several reovirus strains have enhanced replication following microbiota depletion. Here, we focused on an isogenic pair of reoviruses that
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Development of DPP-4-resistant CXCL9-Fc and CXCL10-Fc chemokines for effective cancer immunotherapy Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-16
Jennie Lugassy, Noor Abdala-Saleh, Ghada Jarrous, Abeer Turky, Daniel Saidemberg, Gabriela Ridner-Bahar, Nir Berger, Dana Bar-On, Tetsuya Taura, David Wilson, Nathan KarinCXCR3 is a chemokine receptor for three ligands: CXCL9, CXCL10, and CXCL11. Accumulating evidence, including data presented here, suggests that the interaction between CXCL9/CXCL10 and CXCR3 not only attracts CXCR3+ T cells but also promotes the induction of IFNγ- high effector/cytotoxic CD4+ and CD8+ T cells, establishing a CXCL9/10-CXCR3-IFNγ self-amplifying cycle that promotes efficient cancer cell
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Mechanism of allosteric activation in human mitochondrial ClpP protease Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Monica M. Goncalves, Adwaith B. Uday, Taylor J. B. Forrester, S. Quinn W. Currie, Angelina S. Kim, Yue Feng, Yulia Jitkova, Algirdas Velyvis, Robert W. Harkness, Matthew S. Kimber, Aaron D. Schimmer, Natalie Zeytuni, Siavash VahidiHuman ClpP protease contributes to mitochondrial protein quality control by degrading misfolded proteins. ClpP is overexpressed in cancers such as acute myeloid leukemia (AML), where its inhibition leads to the accumulation of damaged respiratory chain subunits and cell death. Conversely, hyperactivating ClpP with small-molecule activators, such as the recently discovered ONC201, disrupts mitochondrial
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The Q226L mutation can convert a highly pathogenic H5 2.3.4.4e virus to bind human-type receptors Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
María Ríos Carrasco, Ting-Hui Lin, Xueyong Zhu, Alba Gabarroca García, Elif Uslu, Ruonan Liang, Cindy M. Spruit, Mathilde Richard, Geert-Jan Boons, Ian A. Wilson, Robert P. de VriesH5Nx viruses continue to wreak havoc in avian and mammalian species worldwide. The virus distinguishes itself by the ability to replicate to high titers and transmit efficiently in a wide variety of hosts in diverse climatic environments. Fortunately, transmission to and between humans is scarce. Yet, if such an event were to occur, it could spark a pandemic as humans are immunologically naïve to H5
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Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Xianxin Zhao, Yuanyuan Liu, Bo Yuan, Zhichao Cao, Yi Yang, Chun He, Kevin C. Chan, Shan Xiao, Haiwei Lin, Qi Fang, Gongyin Ye, Xinhai YeTrait regression and loss have occurred repeatedly in numerous lineages in response to environmental changes. In parasitoid wasps, a megadiverse group of hymenopteran insects, yolk protein reduction or loss has been observed in many species, likely linked to the transition from ectoparasitism to endoparasitism. However, the genetic basis of this trait and the impact of its loss on genome evolution
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The evolution of robustness and fragility during long-term bacterial adaptation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Doha Chihoub, Coralie Pintard, Richard E. Lenski, Olivier Tenaillon, Alejandro CouceTheory predicts that well-adapted populations may evolve mechanisms to counteract the inevitable influx of deleterious mutations. While mutational robustness can be directly selected in the laboratory, evidence for its spontaneous evolution during general adaptation is mixed. Moreover, whether robustness evolves to include pleiotropic effects remains largely unexplored. Here, we studied the effects
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In the flow, how fluid dynamics shapes amyloid formation. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Leon F Willis,David J Brockwell,Sheena E Radford -
Generating the polymorph landscapes of amyloid fibrils using AI: RibbonFold Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Liangyue Guo, Qilin Yu, Di Wang, Xiaoyu Wu, Peter G. Wolynes, Mingchen ChenThe concept that proteins are selected to fold into a well-defined native state has been effectively addressed within the framework of energy landscapes, underpinning the recent successes of structure prediction tools like AlphaFold. The amyloid fold, however, does not represent a unique minimum for a given single sequence. While the cross- β hydrogen-bonding pattern is common to all amyloids, other
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CD70 recruitment to the immunological synapse is dependent on CD20 in B cells Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Abbey B. Arp, Andrea Abel Gutierrez, Martin ter Beest, Guus A. Franken, Harry Warner, Andrea Rodgers Furones, Angelique N. Kenyon, Franziska Jäger, Alfredo Cabrera-Orefice, Kathrin Kläsener, Sjoerd van Deventer, Lenny Droesen, Vera Marie E. Dunlock, René Classens, Julian Staniek, Jannie Borst, Michael Reth, Ulrich Brandt, Piet Gros, Taco W. Kuijpers, Mirjam H. M. Heemskerk, Marta Rizzi, Laia QuerolCD20 is a four-transmembrane protein expressed at the surface of B cells from late pro-B cells to memory B cells, with the exception of plasma cells. Its expression pattern makes it an attractive therapeutic target for different B cell malignancies and autoimmune diseases. Despite the clinical success of CD20-targeting antibodies, the biology of the CD20 protein is still not well understood. We investigated
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Steeper social discounting after human basolateral amygdala damage Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Tobias Kalenscher, Luca M. Lüpken, Ron Stoop, David Terburg, Jack van HonkTranslational research suggests that the basolateral part of the amygdala (BLA) computes some of the core processes underlying social preferences, but its precise role in prosocial choice remains unclear. We hypothesize that the human BLA is not necessary for prosocial behavior per se, but fine-tunes the degree of prosociality as a function of the social distance between actor and recipient of a prosocial
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Protein Phosphatase 1 Regulatory Subunit 3C integrates cholesterol metabolism and isocitrate dehydrogenase in chondrocytes and neoplasia Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Makoto Nakagawa, Eijiro Shimada, Nicholas Guardino, Ryo Miyamoto, Vijitha Puviindran, Emily Peairs, Ariana Matarangas, Koji Ishikawa, Tuyet Nguyen, Makenna Browne, Choiselle Marius, Asjah Wallace, Makoto Hirata, Puviindran Nadesan, Benjamin A. AlmanEnchondromas are common bone tumors composed of chondrocytes originating from growth plate cells which can progress to malignant chondrosarcoma. Mutations in the genes encoding isocitrate dehydrogenase (IDH1 and IDH2) are identified in a large proportion of these tumors. IDH enzymes convert isocitrate to alpha-ketoglutarate (α-KG), an essential component of the citric acid cycle. While mutant IDH enzymes
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Sex chromosome evolution in haploid plants: Microchromosomes, disappearing chromosomes, and giant chromosomes Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-15
Deborah CharlesworthAs in many diploid organisms with genetic sex determination, haploid-dominant organisms have also evolved sex chromosomes or extensive genomic regions that lack genetic recombination. An understanding of sex chromosome evolution should explain the causes and consequences of such regions in both diploids and haploids. However, haploids have been little studied, even though differences from sex chromosomes
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Design principles for self-organization of mitotic spindle bipolarity. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Timothy J Mitchison -
European Neolithic farmers interbred their domestic pigs with wild boar. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Peter Rowley-Conwy -
Tearing down the house of mosquito-transmitted viruses. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Shanti Pandey,Michaela U Gack -
Introducing the Special Feature on housing differences and inequality over the very long term. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Timothy A Kohler,Amy Bogaard,Scott G Ortman -
Housing inequality and settlement persistence are associated across the archaeological record Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Dan Lawrence, Amy Bogaard, Gabriela Cervantes Quequezana, Francesca Chelazzi, Gary M. Feinman, Adam S. Green, Helena Hamerow, Jessica Munson, Scott G. Ortman, Amy E. ThompsonDefinitions of sustainability commonly stress both systemic continuity and equality over time. However, the degree to which these two sides of sustainability might be related has not been systematically investigated. Recent theoretical and methodological insights have provided archaeologists with new tools for investigating sustainability in premodern societies. Here, we use Gini coefficients on residence
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Reconsidering indoor residual spraying coverage targets: A retrospective analysis of high-resolution programmatic malaria control data Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
David S. Galick, Liberato Motobe Vaz, Lucas Ondo, Marcos Mbulito Iyanga, Faustino Etoho Ebang Bikie, Restituto Mba Nguema Avue, Olivier Tresor Donfack, Jeremías Nzamío Mba Eyono, Teresa Ayingono Ondo Mifumu, Dianna E. B. Hergott, Wonder P. Phiri, David L. Smith, Carlos A. Guerra, Guillermo A. GarcíaIndoor residual spraying (IRS) is one of the core vector control interventions available to malaria control programs. Normative and scientific guidance has long held that very high IRS coverage (at least 80 to 85% houses sprayed) is necessary to provide community protection, but there is little evidence backing these recommendations, in large part due to the operational and ethical concerns that conducting
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A 5-HT-mediated urethral defense against urinary tract infections Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Marcela Ambrogi, Laura L. Hernandez, Douglas W. Strand, Sathish Kumar, Michael F. Romero, Jonathan Barasch, Monica Ridlon, Kimberly P. Keil Stietz, Chad M. VezinaThe urethra is considered a passive conduit for urine. Here, we reveal a surprising multicellular signaling pathway guiding the urethra’s dynamic response to an invading pathogen. Using a genetic approach in female mice, we deposited uropathogenic Escherichia coli into the distal urethra to establish a model of ascending urinary tract infection that progresses to the bladder within 4 h. We show that
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Labor, land, and the global dynamics of economic inequality Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Amy Bogaard, Pablo Cruz, Mattia Fochesato, Jennifer Birch, Gabriela Cervantes Quequezana, Shadreck Chirikure, Enrico R. Crema, Gary M. Feinman, Adam S. Green, Helena Hamerow, Guiyun Jin, Tim Kerig, Dan Lawrence, Mark D. McCoy, Jessica Munson, Scott G. Ortman, Cameron A. Petrie, Paul RoscoeHere, we assess the extent to which land use relating to food acquisition (farming, herding, foraging) and associated value regimes shaped past economic inequality. We consider the hypothesis that land-use systems in which production was limited by heritable material wealth (such as land) sustained higher levels of inequality than those limited by (free) human labor. We address this hypothesis using
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100 generations of wealth equality after the Neolithic transitions Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Tim Kerig, Enrico R. Crema, Jennifer Birch, Gary M. Feinman, Adam S. Green, Detlef Gronenborn, Dan Lawrence, Cameron A. Petrie, Paul Roscoe, Amy E. Thompson, Timothy A. KohlerFrom Rousseau onward, scholars have identified the transition to sedentary agriculture as crucial to the history of wealth inequality. Here, using the GINI project’s global database on disparities in residential size, we examine the effects of important innovations in plant cultivation, animal husbandry, and traction on wealth inequality. Over a series of regional case studies, we find no evidence
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Economic inequality is fueled by population scale, land-limited production, and settlement hierarchies across the archaeological record Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Timothy A. Kohler, Amy Bogaard, Scott G. Ortman, Enrico R. Crema, Shadreck Chirikure, Pablo Cruz, Adam Green, Tim Kerig, Mark D. McCoy, Jessica Munson, Cameron Petrie, Amy E. Thompson, Jennifer Birch, Gabriela Cervantes Quequezana, Gary M. Feinman, Mattia Fochesato, Detlef Gronenborn, Helena Hamerow, Guiyun Jin, Dan Lawrence, Paul B. Roscoe, Eva Rosenstock, Grace K. Erny, Habeom Kim, René Ohlrau, JDefining wealth broadly to include wealth in people, relational connections, and material possessions, we examine the prehistory of wealth inequality at the level of the residential units using the consistent proxy of Gini coefficients calculated across areas of contemporaneous residential units. In a sample of >1,100 sites and > 47,000 residential units spanning >10,000 y, persistent wealth inequality
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Toward multiscalar measures of inequality in archaeology Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Enrico R. Crema, Mattia Fochesato, Andrés G. Mejía Ramón, Jessica Munson, Scott G. OrtmanThe Gini coefficient is a statistical measure commonly used to characterize distributions of socioeconomic quantities. Archaeologists and social scientists have recently adopted this method to analyze ancient inequality by targeting specific proxy variables (e.g., residential unit size, burial data, etc.). Variations in the Gini are then examined in relation to key factors such as time, geography,
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War both reduced and increased inequality over the past ten thousand years Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Mark D. McCoy, Jennifer Birch, Shadreck Chirikure, Pablo Cruz, Adam S. Green, Detlef Gronenborn, Dan Lawrence, Paul RoscoeScholars are divided over the long-term effects that war has had on inequality. Some have argued that conflict grows the gap between rich and poor. Others counter that violence levels out wealth differences. The GINI Project Database is a large global sample of archaeological data on house sizes created to investigate what factors influenced economic inequality over long periods of time, including
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Targeting the complement lectin pathway with a highly specific MASP-2 inhibitor protects against renal ischemia–reperfusion injury Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Anjan K. Bongoni, Bence Kiss, Jennifer L. McRae, Evelyn J. Salvaris, Nella Fisicaro, Fenella Muntz, Bálint Zoltán Németh, Zoltán Attila Nagy, Andrea Kocsis, Péter Gál, Peter J. Cowan, Gábor PálRenal ischemia–reperfusion injury (IRI) is a common complication in several clinical scenarios including kidney transplantation. Mannan-binding lectin-associated serine proteinase (MASP)-2 is essential for activation of the complement lectin pathway, which has been implicated in the pathogenesis of renal IRI and therefore represents a potential therapeutic target. We developed a new, affinity-enhanced
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The world through infant eyes: Evidence for the early emergence of the cardinal orientation bias Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Zachary J. Petroff, Swapnaa Jayaraman, Linda B. Smith, T. Rowan Candy, Kathryn BonnenThe structure of the environment includes more horizontal and vertical (i.e. cardinal) orientations than oblique orientations, meaning that edges tend to be aligned with or perpendicular to the direction of gravity. This bias in the visual scene is associated with a bias in visual sensitivity in adults. Although infants must learn to function in this biased environment, their immature motor control
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Global warming drives a threefold increase in persistence and 1 ° C rise in intensity of marine heatwaves Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Marta Marcos, Angel Amores, Miguel Agulles, Jon Robson, Xiangbo FengMarine heatwaves are extreme climatic events consisting of persistent periods of warm ocean waters that have profound impacts on marine life. These episodes are becoming more intense, longer, and more frequent in response to anthropogenic global warming. Here, we provide a comprehensive and quantitative assessment on the role of global warming on marine heatwaves. To do so, we construct a counterfactual
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The emergence and loss of cyclic peptides in Nicotiana illuminate dynamics and mechanisms of plant metabolic evolution Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Elliot M. Suh, Jakob K. Reinhardt, Jing-Ke WengSpecialized metabolism plays a central role in how plants cope with both biotic and abiotic stresses in order to survive and reproduce within dynamic and challenging environments. One recently described class of plant-specific, ribosomally synthesized, and posttranslationally modified peptides are the burpitides, which are characterized by the installation of distinct sidechain macrocycles by enzymes
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Assessing neighborhoods, wealth differentials, and perceived inequality in preindustrial societies Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Amy E. Thompson, Jessica Munson, Scott G. Ortman, Andrés G. Mejía Ramón, Gary M. Feinman, Gabriela Cervantes Quequezana, Pablo Cruz, Adam S. Green, Dan Lawrence, Paul RoscoeHumans often live in neighborhoods, nested socio-spatial clusters within settlements of varying size and population density. In today’s cities, neighborhoods are often characterized as relatively homogenous and may exhibit segregation along various socioeconomic dimensions. However, even within neighborhoods of similar social or economic status, there is often residential disparity, which in turn impacts
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Changes in agglomeration and productivity are poor predictors of inequality across the archaeological record Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Scott G. Ortman, Amy Bogaard, Jessica Munson, Dan Lawrence, Adam S. Green, Gary M. Feinman, Shadreck Chirikure, Johannes H. Uhl, Stefan LeykWe address three basic issues regarding the long-term dynamics of inequality in society. First, we consider the interpretation of residence sizes in socioeconomic terms by comparing statistical patterns extracted from the Global Dynamics of Inequality (GINI) Project database with those from the 21st-century United States. Second, we examine the degree to which the size and productivity of human networks
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Kuznets’ tides: An archaeological perspective on the long-term dynamics of sustainable development Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Adam S. Green, Gary M. Feinman, Amy E. Thompson, Pablo Cruz, Shadreck Chirikure, Tim Kerig, Dan Lawrence, Cameron A. Petrie, Scott G. OrtmanUnderstanding the relationship between inequality and economic growth is a critical science problem that hinders sustainable development. In 1955, Simon Kuznets hypothesized that rising economic growth raises inequality, which levels off as that growth continues. Kuznets’ “curve,” which is a cornerstone of development economics, was based on data from a small sample of rich capitalist economies. Here
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Assessing grand narratives of economic inequality across time Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Gary M. Feinman, Gabriela Cervantes Quequezana, Adam Green, Dan Lawrence, Jessica Munson, Scott Ortman, Cameron Petrie, Amy Thompson, Linda M. NicholasLong-entrenched grand narratives have tied inequality in large human aggregations to generally linear trends, a direct outcome of domestication, then fostered by population growth and/or stepped scalar transitions in the hierarchical complexity of human institutions. This general pattern has been argued to short-circuit or reverse only in the context of cataclysmic disasters or societal breakdowns
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A plant CLE peptide and its fungal mimic promote arbuscular mycorrhizal symbiosis via CRN-mediated ROS suppression Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Sagar Bashyal, Hasani Everett, Suzanne Matsuura, Lena Maria MüllerCLAVATA3/EMBRYO SURROUNDING REGION-related (CLE) peptides have emerged as key regulators of plant–microbe interactions, including arbuscular mycorrhizal (AM) symbiosis. Here, we identify Medicago truncatula CLE16 as a positive regulator of AM symbiosis. MtCLE16 is expressed in root cells colonized by AM fungi (AMF) and its overexpression within colonized tissues increases arbuscule abundance by finetuning
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Molecular design of a therapeutic LSD analogue with reduced hallucinogenic potential Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Jeremy R. Tuck, Lee E. Dunlap, Yara A. Khatib, Cassandra J. Hatzipantelis, Sammy Weiser Novak, Rachel M. Rahn, Alexis R. Davis, Adam Mosswood, Anna M. M. Vernier, Ethan M. Fenton, Isak K. Aarrestad, Robert J. Tombari, Samuel J. Carter, Zachary Deane, Yuning Wang, Arlo Sheridan, Monica A. Gonzalez, Arabo A. Avanes, Noel A. Powell, Milan Chytil, Sharon Engel, James C. Fettinger, Amaya R. Jenkins, WilliamDecreased dendritic spine density in the cortex is a key pathological feature of neuropsychiatric diseases including depression, addiction, and schizophrenia (SCZ). Psychedelics possess a remarkable ability to promote cortical neuron growth and increase spine density; however, these compounds are contraindicated for patients with SCZ or a family history of psychosis. Here, we report the molecular design
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SNX10 deficiency impairs sensitivity to anti-HER2 antibody–drug conjugates via altering HER2 trafficking in HER2-positive breast cancer Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Yu-Fei Chen, Qing-Hua Zhang, Zhong-Wei Zhang, Yu-Jie Zhou, Cui-Cui Liu, Zhi-Ming Shao, Ke-Da YuAntibody–drug conjugates (ADCs) are a rapidly developing therapeutic approach in cancer treatment that has shown remarkable efficacy in breast cancer. Despite the promising efficacy of anti-HER2 ADCs, many patients are still experiencing disease progression under treatment. Here, by analyzing the transcriptome data from patient-derived organoid models, I-SPY2 trial, and resistant cell lines, we identified
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Temperature thresholds induce abrupt shifts in biodiversity and ecosystem services in montane ecosystems worldwide Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Xiao-Min Zeng, Miguel Berdugo, Tadeo Saez-Sandino, Dongxue Tao, Tingting Ren, Guiyao Zhou, Yu-Rong Liu, Cesar Terrer, Peter B. Reich, Manuel Delgado-BaquerizoMontane ecosystems are crucial for maintaining global biodiversity and function that sustain life on our planet. Yet, these ecosystems are highly vulnerable to changing temperatures and may undergo critical transitions under ongoing climate change. What we do not know is to what extent montane biodiversity and ecosystem services will respond to local temperature variations in a gradual versus abrupt
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A rare variant in GPR156 associated with depression in a Mennonite pedigree causes habenula hyperactivity and stress sensitivity in mice Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-04-14
Bradley R. Miller, Claudia Gonzaga-Jauregui, Karlla W. Brigatti, Job de Jong, Robert S. Breese, Seung Yeon Ko, Erik G. Puffenberger, Cristopher Van Hout, Millie Young, Victor M. Luna, Jeffrey Staples, Michael B. First, Hilledna J. Gregoire, Andrew J. Dwork, Evangelos Pefanis, Shane McCarthy, Susannah Brydges, Jose Rojas, Bin Ye, Eli Stahl, Silvio Alessandro Di Gioia, René Hen, Kevin Elwood, GorazdMajor depressive disorder (MDD) is a leading cause of disability worldwide. Risk for MDD is heritable, and the genetic structure of founder populations enables investigation of rare susceptibility alleles with large effect. In an extended Old Order Mennonite family cohort, we identified a rare missense variant in GPR156 (c.1599G>T, p.Glu533Asp) associated with a two-fold increase in the relative risk