The Global Soil Mycobiome consortium dataset for boosting fungal diversity research,Fungal Diversity

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The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
Fungal Diversity ( IF 24.5 ) Pub Date : 2021-11-30 , DOI: 10.1007/s13225-021-00493-7
Leho Tedersoo ₁ , Vladimir Mikryukov _{1,

2} , Sten Anslan _{1,

2} , Ahto Agan ₁ , Daniyal Gohar ₁ , Eveli Otsing ₁ , Indrek Hiiesalu _{1,

2} , Inga Hiiesalu _{1,

2} , Irma Zettur ₁ , John Y. Kupagme ₁ , Kadri Põldmaa _{1,

2} , Kadri Runnel _{1,

2} , Niloufar Hagh-Doust _{1,

2} , Rasmus Puusepp ₁ , Saleh Rahimlou ₁ , Sergei Põlme ₁ , Urmas Kõljalg _{1,

3} , Kessy Abarenkov _{1,

3} , Jaan Pärn ₂ , Joosep Sarapuu ₂ , Mohammad Bahram ₄ , Tarquin Netherway ₄ , Tomas Roslin ₄ , Abdul Nasir Khalid ₅ , Adriana Corrales ₆ , Aída-M. Vasco-Palacios ₇ , Alessandro Saitta ₈ , Alexandre Antonelli ₉ , Andrea C. Rinaldi ₁₀ , Annemieke Verbeken ₁₁ , Eske De Crop ₁₁ , Bobby P. Sulistyo ₁₂ , Boris Tamgnoue ₁₃ , Joseph Djeugap Fovo ₁₃ , Brendan Furneaux ₁₄ , Peter Meidl ₁₄ , Camila Duarte Ritter ₁₅ , Casper Nyamukondiwa ₁₆ , Cathy Sharp ₁₇ , César Marín ₁₈ , D. Q. Dai ₁₉ , Dipon Sharmah ₂₀ , Elisabeth Machteld Biersma _{21,

22} , Kevin K. Newsham ₂₁ , Erin K. Cameron ₂₃ , Evgeny A. Davydov ₂₄ , Felipe E. Albornoz ₂₅ , Francis Q. Brearley ₂₆ , Franz Buegger ₂₇ , Karin Pritsch ₂₇ , Genevieve Gates ₂₈ , Geoffrey Zahn ₂₉ , Gregory Bonito ₃₀ , Isabel C. Barrio ₃₁ , Jacob Heilmann-Clausen ₃₂ , Jelena Ankuda ₃₃ , Kęstutis Armolaitis ₃₃ , Jose G. Maciá-Vicente ₃₄ , József Geml ₃₅ , Juha M. Alatalo ₃₆ , Talaat Ahmed ₃₆ , Julieta Alvarez-Manjarrez ₃₇ , Jutamart Monkai ₃₈ , Kevin D. Hyde ₃₈ , W. A. Erandi Yasanthika ₃₈ , Kalev Adamson ₃₉ , Rein Drenkhan ₃₉ , Kari A. Bråthen ₄₀ , Maria Tuomi ₄₀ , Kassim I. Tchan ₄₁ , Kristel Panksep ₄₂ , Lateef A. Adebola ₄₃ , Louis J. Lamit _{44,

45} , Malka Saba ₄₆ , Marcela E. da Silva Cáceres ₄₇ , Marieka Gryzenhout ₄₈ , Marijn Bauters ₄₉ , Miklós Bálint ₅₀ , Nalin Wijayawardene ₅₁ , Nourou S. Yorou ₅₂ , Olavi Kurina ₅₃ , Peter E. Mortimer ₅₄ , R. Henrik Nilsson ₅₅ , Rebeca Casique-Valdés ₅₆ , Roberto Garibay-Orijel ₅₇ , Roberto Godoy ₅₈ , Saleh Alfarraj ₅₉ , Sergey V. Dudov ₆₀ , Vladimir E. Fedosov _{60,

61} , Vladimir G. Onipchenko ₆₀ , Sunil Mundra ₆₂ , Terry W. Henkel ₆₃ , Young Woon Lim ₆₄ , Meike Piepenbring ₆₅ , Darta Klavina ₆₆

Affiliation

Mycology and Microbiology Center, University of Tartu, Tartu, Estonia
Institute of Ecology and Earth Sciences, Tartu, Estonia
Natural History Museum, University of Tartu, Tartu, Estonia
Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, Pakistan
Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
Grupo de Microbiología Ambiental y BioMicro, Escuela de Microbiología, Universidad de Antioquia UdeA, Medellín, Colombia
Department of Agricultural, Food and Forest Sciences, University of Palermo, Palermo, Italy
Royal Botanic Gardens, Surrey, UK
Department of Biomedical Sciences, University of Cagliari, Cagliari, Italy
Research Group Mycology, Department of Biology, Ghent University, Ghent, Belgium
Department of Biomedicine, Indonesia International Institute for Life Sciences, Jakarta, Indonesia
Plant Pathology and Agricultural Zoology Research Unit, Department of Plant Protection, Faculty of Agronomy and Agricultural Sciences, University of Dschang, Dschang, Cameroon
Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
Eukaryotic Microbiology, University of Duisburg-Essen, Essen, Germany
Department of Biological Sciences and Biotechnology, Botswana International University of Science and Technology, Palapye, Botswana
Natural History Museum of Zimbabwe, Bulawayo, Zimbabwe
Institute of Botany, Czech Academy of Sciences, Průhonice, Czech Republic
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, People’s Republic of China
Department of Botany, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Pondicherry University, Port Blair, India
British Antarctic Survey, NERC, Cambridge, UK
Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
Department of Environmental Science, Saint Mary’s University, Halifax, NS, Canada
Altai State University, Barnaul, Russia
CSIRO Land and Water, Wembley, WA, Australia
Department of Natural Sciences, Manchester Metropolitan University, Manchester, UK
Institute of Biochemical Plant Pathology, Helmholtz Zentrum München - Deutsches Forschungszentrum Für Gesundheit und Umwelt, Neuherberg, Germany
Tasmanian Institute of Agriculture, Hobart, TAS, Australia
Biology Department, Utah Valley University, Orem, UT, USA
Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
Faculty of Environmental and Forest Sciences, Agricultural University of Iceland, Reykjavík, Iceland
Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
Department of Ecology, Institute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC), Kaunas distr., Lithuania
Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
Lendület Environmental Microbiome Research Group, Eszterházy Károly University, Eger, Hungary
Environmental Science Center, Qatar University, Doha, Qatar
Instituto de Geología, Universidad Nacional Autónoma de México, Coyoacán, Mexico City, Mexico
Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
Department of Arctic and Marine Biology, UiT – Arctic University of Norway, Tromsø, Norway
Research Unit Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, Parakou, Benin
Chair of Hydrobiology and Fishery, Estonian University of Life Sciences, Tartu, Estonia
Department of Plant Biology, University of Ilorin, Ilorin, Nigeria
Department of Biology, Syracuse University, Syracuse, NY, USA
Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, NY, USA
Department of Plant Sciences, Quaid-I-Azam University, Islamabad, Pakistan
Departamento de Biociências, Universidade Federal de Sergipe, Itabaiana, Sergipe, Brazil
Department of Genetics, Faculty of Natural Sciences, University of the Free State, Bloemfontein, South Africa
Department of Environment, Ghent University, Ghent, Belgium
LOEWE Centre for Translational Biodiversity Genomics, Frankfurt am Main, Germany
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, People’s Republic of China
Faculty of Agronomy, University of Parakou, Parakou, Benin
Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, University of Gothenburg, Göteborg, Sweden
Instituto de Ciencias y Humanidades Lic. Salvador González Lobo, Universidad Autónoma de Coahuila, Saltillo, Mexico
Instituto de Biología, Universidad Nacional Autónoma de México, Mexico, Mexico
Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
Department of Ecology and Plant Geography, Lomonosov Moscow State University, Moscow, Russia
Botanical Garden-Institute FEB RAS, Vladivostok, Russia
Department of Biology, College of Science, United Arab Emirates University, Al Ain, Abu Dhabi, UAE
Department of Biological Sciences, Humboldt State University, Arcata, CA, USA
School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Korea
Mycology Working Group, Goethe University Frankfurt am Main, Frankfurt am Main, Germany
Latvian State Forest Research Institute Silava, Salaspils, Latvia

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

中文翻译：

用于促进真菌多样性研究的全球土壤真菌组联盟数据集

真菌是陆地生态系统非常重要的生物组成部分，但我们对其多样性和分布的了解仍然非常有限。本数据文章发布了全球土壤真菌组联盟 (GSMc) 的全球土壤真菌数据集，以促进真菌多样性、生物地理学和宏观生态学的进一步研究。该数据集包含 722,682 个真菌操作分类单位 (OTU)，这些单位源自对来自各大洲 108 个国家的 3200 个地块的全长 ITS 和 18S-V9 可变区进行 PacBio 测序。这些地块提供了地理和土壤元数据。 OTU 在分类和功能上被分配给行会和其他功能组。整个数据集已通过排除嵌合体、索引转换伪影和潜在污染进行了纠正。该数据集在真菌的地理广度和系统发育多样性方面比之前发布的数据更具包容性。 GSMc 数据集可通过 PlutoF 存储库获取。

更新日期：2021-11-30

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