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Yang Ruirui, Wang Zhicheng, Zhao Lei, Liu Jie, Meng Jun, Luan Yushi*. The secreted peptide SpPIP1 modulates disease resistance and salt tolerance in tomato. Journal of Agricultural and Food Chemistry. 2023, https://doi.org/10.1021/acs.jafc.3c03412. (SCI IF 6.1, JCR Q1, TOP期刊)
Wang Zhicheng #, Su Chenglin#, Hu Wenyun, Su Qiao*, Luan Yushi*. The effectors of Phytophthora infestans impact host immunity upon regulation of antagonistic hormonal activities. Planta. 2023, 258: 59. https://rdcu.be/dio8Z (SCI IF 4.3, JCR Q1)
Zhou Xiaoxu#, Wang Zhengjie#, Su Chenglin, Cui Jun, Meng Jun, Luan Yushi*. Genome-wide analyses of miRNAs in mycorrhizal plants in response to late blight and elucidation of the role of miR319c in tomato resistance. Horticultural Plant Journal. 2023, 9: https://doi.org/10.1016/j.hpj.2023.03.016. (SCI IF 5.7, JCR Q1, TOP期刊)
Su Chenglin#, Wang Zhengjie#, Cui Jun, Wang Zhicheng, Wang Ruiming, Meng Jun, Luan Yushi*. Sl-lncRNA47980, a positive regulator affects tomato resistance to Phytophthora infestans. International Journal of Biological Macromolecules. 2023, 248: 125824. (SCI IF 8.2, JCR Q1, TOP期刊)
Wang Zhengjie#, Cui Qi#, Su Chenglin, Zhao Siyuan, Wang Ruiming, Wang Zhicheng, Meng Jun, Luan Yushi*. Unveiling the Secrets of Non-coding RNA-encoded Peptides in Plants: A Comprehensive Review of Mining Methods and Research Progress. International Journal of Biological Macromolecules. 2023, 242: 124952. (SCI IF 8.2, JCR Q1, TOP期刊)
Yang Ruirui, Liu Jie, Wang Zhicheng, Zhao Lei, Xue Tingting, Meng Jun, Luan Yushi*. The SlWRKY6-SlPROPEP-SlPep module confers tomato resistance to Phytophthora infestans. Scientia Horticulturae. 2023, 318: 112117. (SCI IF 4.3, JCR Q1, TOP期刊)
Zhao Siyuan, Meng Jun*, Wekesa Jael Sanyanda, Luan Yushi. Identification of small open reading frames in plant lncRNA using class-imbalance learning. Computers in Biology and Medicine. 2023, 157: 106773 (SCI IF 7.7, JCR Q1).
Hong Yuhui, Zhang Yuanyuan, Cui Jun, Meng Jun, Chen Yinhua, Zhang Chengwei, Yang Jinxiao* and Luan Yushi*. The lncRNA39896–miR166b–HDZs module affects tomato resistance to Phytophthora infestans. Journal of Integrative Plant Biology, 2022, 64: 1979-1993. (SCI IF 11.4, JCR Q1, TOP期刊).
Kang Qiang, Meng Jun*, Luan Yushi*. RNAI-FRID: novel feature representation method with information enhancement and dimension reduction for RNA–RNA interaction. Briefings in Bioinformatics. 2022, 23(3): 1-10. (SCI IF 9.5, JCR Q1).
Jia Lijuan, Luan Yushi*. Multi-feature Fusion Method Based on Linear Neighborhood Propagation Predict Plant LncRNA–Protein Interactions. Interdisciplinary Sciences: Computational Life Sciences. 2022, 14(2): 545-554. (SCI IF 4.8, JCR Q1).
Kang Qiang, Meng Jun*, Su Chenglin, Luan Yushi*. Mining plant endogenous target mimics from miRNA–lncRNA interactions based on dual-path parallel ensemble pruning method. Briefings in Bioinformatics. 2022, 23(1): 1-11. (SCI IF 9.5, JCR Q1).
Hong Yuhui#, Liu Yarong#, Zhang Yuanyuan#, Jia Lijuan, Yang Xi, Zhang Xiaoyi, Liu Jiaxin, Luan Yushi*. Genome-wide characterization of homeobox-leucine zipper gene family in tomato (Solanum lycopersicum) and functional analysis of SlHDZ34 (III sub-family member) under salinity stress. Environmental and Experimental Botany, 2021, 192: 104652. (SCI IF 6.028, JCR Q1).
Wang Zhicheng, Luan Yushi*, Zhou Xiaoxu, Cui Jun, Luan Feishi, Meng Jun*. Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon. Briefings in Bioinformatics. 2021, 22(4): 1-10. (SCI IF 13.994, JCR Q1).
Zhang Yuanyuan#, Hong Yuhui#, Liu Yarong, Cui Jun, Luan Yushi*. Function identifcation of miR394 in tomato resistance to Phytophthora infestans. Plant Cell Reports. 2021, 40(10): 1831-1844. (SCI IF 4.964, JCR Q1).
Hong Yuhui, Meng Jun, He Xiaoli, Zhang Yuanyuan, Liu Yarong, Zhang Chengwei, Qi Hongyan*, Luan Yushi*. Editing miR482b and miR482c simultaneously by CRISPR/Cas9 enhanced tomato resistance to Phytophthora infestans. Phytopathology, 2021, 111(6): 1008-1016. (SCI IF 4.01, JCR Q1, TOP期刊).
Zhou Xiaoxu, Cui Jun, Meng Jun, Luan Yushi*. Interactions and links among the noncoding RNAs in plants under stresses. Theoretical and Applied Genetics. 2020, 133(12), 3235-3248. (SCI IF 5.699, JCR Q1, TOP期刊).
Jiang Ning#, Cui Jun#, Hou Xinxin, Yang Guanglei, Xiao Yu, Han Lu, Meng Jun*, Luan Yushi*. Sl-lncRNA15492 interacts with Sl-miR482a and affects Solanum lycopersicum immunity against Phytophthora infestans. Plant Journal, 2020. 103(4): 1561-1574. (SCI IF 6.486, JCR Q1, TOP期刊)
Hou Xinxin, Cui Jun, Liu Weiwei, Jiang Ning, Zhou Xiaoxu, Qi Hongyan, Meng Jun*, Luan Yushi*. LncRNA39026 enhances tomato resistance to Phytophthora infestans by decoying miR168a and inducing PR genes expression. Phytopathology, 2020, 110(4): 873-880. (SCI IF 4.025, JCR Q1, TOP期刊).
Kang Qiang, Meng Jun*, Cui Jun, Luan Yushi*, Chen Ming. PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction. Bioinformatics, 2020, 36(10), 2986-2992. (SCI IF 6.937, JCR Q1).
Hong Yuhui, Meng Jun, Zhang Min, Luan Yushi*. Identification of tomato circular RNAs responsive to Phytophthora infestans. Gene, 2020, 746:144652. (SCI IF 3.688, JCR Q2).
Liu Yarong, Cui Jun, Zhou Xiaoxu, Luan Yushi*, Luan Feishi*. Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.). Genomics, 2020, 112(3): 2499-2509 (SCI IF5.736, JCR Q1).
Cui Jun, Jiang Ning, Hou Xinxin, Wu Sihan, Zhang Qiang, Meng Jun*, Luan Yushi*. Genome-wide Identification of LncRNAs and Analysis of CeRNA Networks during Tomato Resistance to Phytophthora infestans. Phytopathology, 2020, 110(2): 456-464. (SCI IF 4.025, JCR Q1, TOP期刊).
Chen Lei, Meng Jun, He Xiaoli, Zhang Ming, Luan Yushi*. Solanum lycopersicum microRNA1916 targets multiple target genes and negatively regulates the immune response in tomato. Plant Cell and Environment. 2019, 42(4): 1393-1407. (SCI IF 6.362, JCR Q1, TOP期刊)
Cui Jun, Jiang Ning, Meng Jun*, Yang Guanglei, Liu Weiwei, Zhou Xiaoxu, Ma Ning, Hou Xinxin, Luan Yushi*. LncRNA33732-RESPIRATORY BURST OXIDASE module associated with WRKY1 in tomato- Phytophthora infestans interactions. Plant Journal, 2019, 97(5): 933-946. (SCI IF 6.141, JCR Q1, TOP期刊; 高被引论文)
Jiang Ning, Cui Jun, Shi Yunsheng, Yang Guanglei, Zhou Xiaoxu, Hou Xinxin, Meng Jun*, Luan Yushi*, Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction. Horticulture Research. 2019, 6 :28. (SCI IF 5.404, JCR Q1, TOP期刊).
Sun Xiaodong, Lyu Guozhong*, Luan Yushi*, Yang Hong, Zhao Zhihui. Metabolomic study of the soybean pastes fermented by the single species Penicillium glabrum GQ1-3 and Aspergillus oryzae HGPA20. Food Chemistry. 2019. 295: 622-629. (SCI IF 6.306, JCR Q1, TOP期刊).
Jiang Ning, Cui Jun, Yang Guanglei, He Xiaoli, Meng Jun, Luan Yushi*, Comparative transcriptome analysis shows the defense response networks regulated by miR482b. Plant Cell Reports. 2019, 38(1):1-13. (SCI IF 3.825, JCR Q1)
Cui Jun#, Jiang Ning#, Zhou Xiaoxu, Hou Xinxin, Yang Guanglei, Meng Jun*, Luan Yushi*. Tomato MYB49 enhances resistance to Phytophthora infestans and tolerance to water deficit and salt stress. Planta, 2018. 248(6): 1487-1503. (SCI IF 3.06, JCR Q1).
Jiang Ning, Cui Jun, Meng Jun, Luan Yushi*, A tomato NBS-LRR gene is positively involved in plant resistance to Phytophthora infestans. Phytopathology, 2018, 108(8): 980-987. (SCI IF 3.264, JCR Q1, TOP期刊).
Cui Jun, Xu Pinsan, Meng Jun*, Li Jingbin, Jiang Ning, Luan Yushi*, Transcriptome signatures of tomato leaf induced by Phytophthora infestans and functional identification of transcription factor SpWRKY3. Theoretical and Applied Genetics. 2018, 131(4): 787-800 (SCI IF 3.926, JCR Q1, TOP期刊).
Jiang Ning, Meng Jun*, Cui Jun, Sun Guangxin, Luan Yushi*, Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans. Horticulture Research. 2018, 5 :9. (SCI IF 3.64, JCR Q1, TOP期刊).
Sun Xiaodong, Lyu Guozhong*, Luan Yushi*, Zhao Zhihui, Yang Hong, Su Dan. Analyses of microbial community of naturally homemade soybean pastes in Liaoning Province of China by Illumina Miseq Sequencing. Food Research International, 2018. 111: 50-57. (SCI IF3.579, JCR Q1, TOP期刊).
Luan Yushi, Cui Jun, Li Jie, Jiang Ning, Liu Ping, Meng Jun*, Effective enhancement of resistance to Phytophthora infestans by overexpression of miR172a and b in Solanum lycopersicum. Planta. 2018, 247:127-138. (SCI IF 3.06, JCR Q1).
Liu Weiwei, Meng Jun*, Cui Jun, Luan Yushi*, Characterization and Function of MicroRNA*s in Plants. Frontiers in Plant Science. 2017, 8: 2200 (SCI IF 3.678, JCR Q1)
Chen Lei, Meng Jun*, Zhai Junmiao, Xu Pinsan, Luan Yushi*. MicroRNA396a-5p and -3p induce tomato disease susceptibility by suppressing target genes and upregulating salicylic acid. Plant Science. 2017, 265 (12): 177-187 (SCI IF 3.712, JCR Q1)
Cui Jun, Luan Yushi*, Jiang Ning, Bao Hang, Meng Jun*, Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin. Plant Journal, 2017, 89(3): 577-589. (SCI IF 5.775, JCR Q1, TOP期刊; 高被引论文)
Luan Yushi, Cui Jun, Wang Weichen, Meng Jun*, MiR1918 enhances tomato sensitivity to Phytophthora infestans infection. Scientific Reports. 2016, 6:35858. (SCI IF4.259, JCR Q1)
Meng Jun, Hao Han, Luan Yushi*, Classifier Ensemble Selection based on Affinity Propagation Clustering. Journal of Biomedical Informatics. 2016, 60:234-242. (SCI IF2.753, JCR Q1, EI)
Meng Jun, Shi Guanli, Luan Yushi*, Plant miRNA function prediction based on functional similarity network and transductive multi-label classification algorithm. Neurocomputing. 2016, 179: 283-289. (SCI IF 3.317, JCR Q1)
Han Lu (本科生), Luan Yushi*. Horizontal Transfer of Small RNAs to and from Plants. Frontiers in Plant Science. 2015, 6:1113. (SCI IF 4.495, JCR Q1).
Chen Lei, Luan Yushi*, Zhai Junmiao. Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility to Phytophthora nicotianae infection in transgenic tobacco. Plant Cell Reports. 2015, 34(12): 2013-2025. (SCI IF3.088, JCR Q1)
Meng Jun, Liu Dong, Luan Yushi*, Inferring plant microRNA functional similarity using a weighted protein-protein interaction network. BMC Bioinformatics. 2015, 16: 360. (SCI IF 2.435, JCR Q1, EI)
Li Jingbin, Luan Yushi*, Liu Zhen. Overexpression of SpWRKY1 promotes resistance to Phytophthora nicotianae and tolerance to salt and drought stress in transgenic tobacco. Physiologia Plantarum, 2015, 155(3): 248-266. (SCI IF 3.52, JCR Q1)
Li Jingbin, Luan Yushi*, Liu Zhen. SpWRKY1 mediates resistance to Phytophthora infestans and tolerance to salt and drought stress by modulating reactive oxygen species homeostasis and expression of defense-related genes in tomato. Plant Cell Tissue and Organ Culture. 2015, 123(1): 67-81. (SCI IF 2.39, JCR Q1, EI)
Wang Weichen, Luan Yushi*, The advance of tomato disease-related microRNAs. Plant Cell Reports. 2015, 34(7): 1089-1097 (SCI IF 3.088, JCR Q1)
Luan Yushi, Cui Jun, Zhai Junmiao, Li Jie, Han Lu, Meng Jun*, High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans. Planta. 2015, 241(6):1405-1416 (SCI IF 3.239, JCR Q1)
Meng Jun, Liu Dong, Sun Chao, Luan Yushi*, Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine. BMC Bioinformatics. 2014, 15:423. (SCI IF 2.576, JCR Q1)
Meng Jun, Zhang Jing, Li Rui, Luan Yushi*, Gene selection using rough set based on neighborhood for the analysis of plant stress response. Applied Soft Computing, 2014, 25(12): 51-63 (SCI IF 2.81, JCR Q1)
杨茜, 栾雨时*. sly-miR399在番茄抗晚疫病中的初步探究. 中国生物工程杂志, 2021, 41 (11): 23-31.
张晓艺# (本科生), 洪雨慧#, 张媛媛, 栾雨时*. Sly-miR166b及其靶基因在番茄抗晚疫病中的作用初探. 园艺学报, 2021, 48 (8): 1595-1604.
马宁, 刘亚荣, 崔军, 洪雨慧, 栾雨时*. 番茄蛋白酶抑制剂基因SLPI100的克隆、表达与生物信息学分析. 基因组学与应用生物学, 2020, 39(10): 4656-4663.
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