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Nguyen V, Wilson C, Homberger M, Stiller J, Agafonov R, Kutter S, English J, Theobald DL, Kern D. "Evolutionary drivers of thermoadaptation in enzyme catalysis." Science 355. 6322 (2017): 289-294. Trieu MM, Devine EL, Lamarche LB, Ammerman AE, Greco JA, Birge RR, Theobald DL, Oprian DD. "Expression, Purification, and Spectral Tuning of RhoGC, a Retinylidene/Guanylyl Cyclase Fusion Protein and Optogenetics Tool from the Aquatic Fungus Blastocladiella emersonii.." J Biol Chem (2017). Devine EL, Theobald DL, and Oprian DD. "Relocating the active-site lysine in rhodopsin: 2. Evolutionary intermediates." Biochemistry 55. 34 (2016): 4864-4870. Steindel PA, Chen E, Wirth JD, and Theobald DL. "Gradual neofunctionalization in the convergent evolution of trichomonad lactate and malate dehydrogenases." Protein Science 25. 7 (2016): 1319-1331. Theobald DL. "Presenilin adopts the ClC channel fold." Protein Science 25. 7 (2016): 1363-1365. Chris Wilson, Roman Agafonov, Marc Hömberger, Steffen Kutter, Adelajda Zorba, Jackson Halpin, Vanessa Buosi, Renee Otten, David Waterman, Douglas L. Theobald, and Dorothee Kern. "Using ancient protein kinases to unravel a modern cancer drug’s mechanism." Science 347. 6224 (2015): 882–886. Thomas Hamelryck, Wouter Boomsma, Jesper Ferkinghoff-Borg, Jes Frellsen, John Haslett, John T. Kent, Kanti V. Mardia, and Douglas L. Theobald. "Proteins, physics, and probabilities: An outline of a Bayesian formulation of the protein folding problem." Geometry Driven Statistics. Ed. John T. Kent and Ian Dryden. Chichester: John Wiley and Sons, 2015. 356-376. Boucher JI, Jacobowitz JR, Beckett BC, Classen S, Theobald DL.. "An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases.." eLife 2014;10.7554/eLife.02304. (2014). Mackin K, Roy R, and Theobald DL. "An empirical test of convergent evolution in rhodopsins." Molecular Biology and Evolution 31. 1 (2014): 85-95. Devine EL, Oprian DD, and Theobald DL. "Relocating the active-site lysine in rhodopsin and implications for evolution of the retinylidene proteins." PNAS 110. 33 (2013): 13351-13355. Lyumkis D, Brilot A, Theobald DL, and Grigorieff N. "Likelihood-based classification of cryo-EM images using FREALIGN." Journal of Structural Biology 183. 3 (2013): 377-388. Mardia KV, Fallaize CJ, Barber S, Jackson RM, and Theobald DL. "Bayesian alignment of similarity shapes." The Annals of Applied Statistics 7. 2 (2013): 989-1009. Ni L, Bronk P, Chang EC, Lowell AM, Flam JO, Panzano VC, Theobald DL, Griffith LC, Garrity PA. "A gustatory receptor paralogue controls rapid warmth avoidance in Drosophila." Nature 500. 7464 (2013): 580-584. Theobald DL and Steindel PA. "Optimal simultaneous superpositioning of multiple structures with missing data." Bioinformatics 28. 15 (2012): 1972-1979. Theobald DL. "Likelihood and empirical Bayes superpositions of multiple macromolecular structures." Bayesian methods in structural bioinformatics. Ed. Hamelryck T, Mardia KV, and Ferkinghoff-Borg J. New York: Springer Verlag, 2012 Piasta K, Theobald DL and Miller C. "Potassium-selective block of barium permeation through single KcsA channels." Journal of General Physiology 138. 4 (2011): 421-436. Theobald DL. "On universal common ancestry, sequence similarity, and phylogenetic structure: The sins of P-values and the virtues of Bayesian evidence." Biology Direct 6. (2011): 60. Theobald DL. Full Bayesian analysis of the generalized non-isotropic Procrustes problem with scaling. Proc. of 30th Leeds Annual Statistical Research (LASR) Workshop. Leeds, UK: Department of Statistics, University of Leeds, 2011. Kang K, Pulver SR, Panzano VC, Chang EC, Griffith LC, Theobald DL and Garrity PA. "Analysis of Drosophila TRPA1 reveals an ancient origin for human chemical nociception." Nature 464. 7288 (2010): 597-600. Liu P, Agrafiotis DK, and Theobald DL. "Fast determination of the optimal rotational matrix for macromolecular superpositions." Journal of Computational Chemistry 31. 7 (2010): 1561-1563. Liu P, Agrafiotis DK, and Theobald DL. "Reply to comment on: 'Fast determination of the optimal rotational matrix for macromolecular superpositions'." Journal of Computational Chemistry Epub ahead of print. (2010). Theobald DL and Miller C. "Membrane transport proteins: Surprises in structural sameness." Nature Structural & Molecular Biology 17. 1 (2010): 2-3. Theobald DL. "A formal test of the theory of universal common ancestry." Nature 465. 7295 (2010): 219-222. Theobald DL. "Dawkins' missing link." Rev. of The Greatest Show on Earth, by Dawkins, Richard. Reports of the National Center for Science Education vol. 30 May-June, 2010: 37-38. Theobald DL. "Was the universal common ancestry proved? Reply." Nature 468. (2010): E10.