Benson, Gary - Boston University - Department of Biology

研究领域

algorithm development for DNA sequence analysis

近期论文

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Benson G, Hernandez Y, Loving J (2013) A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm. 24th Annual Symposium on Combinatorial Pattern Matching (CPM- 2013), Lecture Notes in Computer Science, 7922:50-61, Bad Herrenalb, Germany (doi: 10.1007/978-3-642-38905-4 7). Visca P, DArezzo S, Ramisse F, Gelfand Y, Benson G, Vergnaud G, Fry N, Pourcel C (2011) Investigation of the population structure of Legionella pneumophila by analysis of tandem repeat copy number and internal sequence variation, Microbiology, 157:2582-94 (doi:10.1099/mic.0.047258-0; PMID:21622529). Mak DY, Benson G (2009) All Hits All The Time: Parameter Free Calculation of Spaced Seed Sensitivity, Bioinformatics, 25(3):302-308 (doi:10.1093/bioinformatics/btn643; PMID:19095701). Benson G, Mak DY (2008) Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection, Proceedings of the 15th String Processing and Information Retrieval Symposium (SPIRE 2008), Melbourne, Australia, November 2008. Gelfand Y, Rodriguez A, Benson G (2007) TRDB – The Tandem Repeats Database. Nucleic Acids Research 35, D80-D87. Giordano J, Ge YC, Gelfand Y, Abrusan G, Benson G, Warburton PE (2007) Evolutionary history of mammalian transposons determined by genome-wide defragmentation. PLoS Computational Biology 3, 1321-1334. Laidlaw J, Gelfand Y, Ng KW, Garner HR, Ranganathan R, Benson G, Fondon JW (2007) Elevated basal slippage mutation rates among the Canidae. Journal of Heredity 98, 452-460. Mak D, Gelfand Y, Benson G (2006) Indel seeds for homology search. Bioinformatics 22, E341-E349.