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Chao C.,Lee, GA., Pourmorady, A., Sock, E. and Donoghue, MJ.. "Orchestration of neuronal differentiation and progenitor pool expansion in the developing cortex by SoxC genes ." Journal of Neuroscience 35.29 (2015): 10629-10642.
Clifford, MA., Athar, W., Russo, A., Sampognaro, P., Van der goes, MS., Leonard, CE, Zhao, X, Vicini, S. and Donoghue, MJ. . "EphA7 signaling guides cortical dendritic development and spine maturation. ." Proceedings of the National Academy of Sciences 111 (2014): 4994-4999.
North, HA, Clifford, MA, and Donoghue, MJ. . "‘Til Eph do us part: Intercellular signaling via Eph receptors and ephrin ligands guides cerebral cortical development from birth through maturation." Cerebral Cortex 8 (2013): 1765-73.
Lehigh, K., North, HA., Baranoski, J., Leonard, C. and Donoghue MJ. . "Parcellation of the Thalamus into Distinct Nuclei reflects EphA Expression and Function. ." Gene Expression Patterns 13 (2013): 454-463.
Clifford, MA., Kanwal, J., Dzakpasu, R., and Donoghue, MJ. "EphA4 expression promotes network activity and spine maturation in cortical neuronal cultures." Neural Development 6.21 (2011).
North, HA, Karim, A, Jacquin, M., and Donoghue, MJ. "EphA4 is necessary for spatially selective peripheral somatosensory topography." Developmental Dynamics 239 (2010): 630-8.
North HA, Zhao X., Kolk, SM., Clifford MA., and Donoghue, MJ. "Promotion of Proliferation in the Developing Cerebral Cortex by EphA4 Forward Signaling." Development 136 (2009): 2467-2476.
Miller, KJ., Kolk, SM., and Donoghue, MJ.. "EphA7-ephrin-A5 Signaling in Somatosensory Cortex: Developmental Restriction of Molecular Domains and Postnatal Maintenance of Functional Compartments. ." Journal of Comparative Neurology 49 (2006): 627-42.
Kolk, SM, Whitman, MC, Yun, ME, Shete, P, and Donoghue, MJ. . ". A Dynamic Subpopulation of Deep Layer Neurons in the Developing Cerebral Cortex Identified by Tbrain-1-Regulated Transgene Expression. ." Molecular and Cellular Neuroscience 30 (2005): 538-51.
Yun, ME., Johnson, RR., Antic, A., and Donoghue, MJ. . "EphA family gene expression in the developing mouse neocortex: regional patterns reveal intrinsic programs and extrinsic influence. ." Journal of Comparative Neurology 456 (2003): 203-216.
Ogunshola OO., Antic A., Donoghue MJ., Fan SY., Kim H., Stewart WB., Madri JA., Ment LR. . "Paracrine and autocrine functions of neuronal vascular endothelial growth factor (VEGF) in the central nervous system. ." Journal of Biological Chemistry 277 (2002): 11410-11415.
Sestan, N., Rakic, P., and Donoghue, MJ. . "Independent parcellation of the embryonic visual cortex and thalamus revealed by combinatorial Eph/ephrin gene expression. ." Current Biology 116 (2001): 39-43.
Donoghue, MJ. and Rakic, P. . "Molecular Evidence for the early specification of presumptive functional domains in the embryonic primate cerebral cortex. ." Journal of Neuroscience 19 (1999): 5967-5979.
Donoghue, MJ. and Rakic, P. . "Molecular gradients and compartments in the embryonic primate cerebral cortex. ." Cerebral Cortex 9 (1999): 586-600.
Rao, MV., Donoghue, MJ., Merlie, JP., and Sanes, JR. . "Distinct regulatory elements control muscle-specific, fiber type-selective, and axially-graded expression of a myosin light chain gene in transgenic mice. ." Molecular and Cellular Biology 16 (1996): 3909-3922.
Donoghue, MJ., Lewis, RM., Merlie, JP. and Sanes, JR. . "The Eph ligand AL-1 is expressed by rostral muscles and inhibits outgrowth from caudal neurons. ." Molecular and Cellular Neuroscience 88 (1996): 185-198.
Donoghue, MJ. and Sanes, JR.. "All muscles are not created equal. ." Trends in Genetics 10 (1994): 396-401.
Donoghue, MJ., Patton, BL., Sanes, JR. and Merlie, JP. . "An axial gradient of transgene methylation in murine skeletal muscle: genomic imprint of rostrocaudal position. ." Development 116 (1992): 1101-1112.
Donoghue, MJ., Morris-Valero, R., Johnson, YJ., Merlie, JP., and Sanes, JR. . "Mammalian muscle cells bear a cell-autonomous, heritable memory of their rostrocaudal position. ." Cellular and Molecular Biology of Muscle Development 69 (1992): 67-77.
Donoghue, MJ., Alvarez, JD., Merlie, JP., and Sanes, JR. . "Fiber type- and position-dependent expression of a myosin light chain-CAT transgene detected with a novel histochemical stain for CAT. ." Journal of Cell Biology 115 (1991): 423-434.
Wentworth, B., Donoghue, M., Engert, J., Berglund, E. and Rosenthal, N. . "Paired MyoD binding sites regulate myosin light chain gene expression. ." Proceedings of the National Academy of Sciences 88 (1990): 1242-1246.
Rosenthal, N., Berglund, E., Wentworth, B., Donoghue, M., Winter, B., Bober, E., Braun, T. and Arnold, H. . "A highly conserved enhancer downstream of the human MLC1/3 locus is a target for multiple myogenic determination factors. ." Nucleic Acids Research 18 (1990): 6239-6246.
Donoghue, MJ., Merlie JP., Rosenthal, N., and Sanes, JR. 1990. . "A rostrocaudal gradient of transgene expression in adult skeletal muscle. ." Proceedings of the National Academy of Sciences 88 (1990): 5847-5851.
Rosenthal, N., Kornhauser, J., Donoghue, M., Rosen, K., and Merlie, J. . "Myosin light chain enhancer activates muscle-specific, developmentally regulated gene expression in transgenic mice. ." Proceedings of the National Academy of Sciences 86 (1989): 7780-7784.
Donoghue, M., Ernst, H., Wentworth, B., Nadal-Ginard, B., and Rosenthal, N. . "A muscle-specific enhancer is located at the 3’ end of the myosin light chain 1/3 gene locus. ." Genes and Development 2 (1988): 1779-1790.