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研究领域

1.植物细胞分子遗传学 2.植物基因组与分子进化遗传学 3. 植物基因组学与蛋白质组学

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1.Songtao Gui, Jing Peng, Xiaolei Wang, Zhihua Wu, Rui Cao, Jér?me Salse, Hongyuan Zhang, Zhixuan Zhu, Qiuju Xia, Zhiwu Quan, Liping Shu, Wedong Ke and Yi Ding1*.Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements. The plant journal 2018, TPJ-00125-2018 DOI:10.1111/tpj.13894 2.Yinzhen Zheng, Junjie Yan, Shuzhen Wang, Meiling Xu, Keke Huang, Guanglong Chen and Yi Ding*. Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice. Molecular Genetics and Genomics 2018, 293(6):1317-1331DOI:10.1007/s00438-018-1466-x 3.Guanglong Chen, Yu Zou, Jihong Hu* and Yi Ding*.Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments.BMC Genomics 2018,19:720 https://doi.org/10.1186/s12864-018-5088-9 4.Jihong Hu, Tao Zeng, Qiongmei Xia, Qian Qian, Congdang Yang, Yi Ding*, Luonan Chen*, Wen Wang*.Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model. Scientific reports 2018, 8:8498 5.Zhixuan Zhu, Songtao Gui, Jing Jin, Rong Yi, Zhihua Wu, Qian Qian and Yi Ding*. The NnCenH3 protein and centromeric DNA sequences profile of sacred lotus (Nelumbo nucifera Gaertn.) reveal the DNA structures and dynamics of centromeres in basal eudicots. The plant journal 2016, doi: 10.1111/tpj.13219 6.Yubo Zhang and Yi Ding*. Dynamics Simulation and Bioinformatics Study on chloroplast stromal ridge complex from rice ( Oryza sativa L.).BMC Bioinformatics 2016, 17:28| DOI 10.1186/s12859-016-0877-0 7.Songtao Gui, Zhihua Wu, Hongyuan Zhang, Yinzhen Zheng, Zhixuan Zhu, Dequan Liang and Yi Ding*. The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features. Scientific reports 2016, 6:30158 | DOI: 10.1038/srep30158 8.Hongyuan Zhang, Jihong Hu, Qian Qian, Hao Chen, Jing Jin, and Yi Ding*. Small RNA profiles of the rice PTGMS line Wuxiang S reveal miRNAs involved in the fertility transition. Frontiers in Plant Science 2016, 7: 514 | DOI: 10.3389/fpls.2016.00514 9.Jihong Hu, Guanglong Chen, Hongyuan Zhang, Qian Qian, and Yi Ding*. Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.). BMC Plant Biology 2016, 16:175 | DOI 10.1186/s12870-016-0864-7 10.Jihong Hu, Jing Jin, Qian Qian, Keke Huang and Yi Ding*. Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera. BMC Genomics 2016, 17 (1):684| DOI:10.1186/s12864-016-3032-4 11.Junjie Yan, Hongyuan Zhang, Yinzheng Zheng,and Yi Ding*. Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development. Planta 2015, 241:109-123 | DOI: 10.1007/s00425-014-2167-2 12.Jihong Hu, Xiaojun Chen, Hongyuan Zhang, and Yi Ding*. Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S. BMC Genomics 2015,16:102 |DOI 10.1186/s12864-015-1317-7 13.Jihong Hu, Songtao Gui, Zhixuan Zhu, Xiaolei Wang, Weidong Ke, and Yi Ding*. Genome-wide identification of SSR and SNP markers based on whole-genome re-sequencing of a Thailand wild sacred lotus (Nelumbo nucifera). PLoS ONE 2015,10(11): e0143765| DOI:10.1371/journal.pone.0143765 14.Qian Qian, Lin Huang, Rong Yi, Shuzhen Wang, Yi Ding*. Enhanced resistance to blast fungus in rice (Oryza sativa L.) by expressing the ribosome-inactivating protein alpha- momorcharin. Plant Science 2014,217-218: 1-7 15.Xiaojun Chen, Jihong Hu, Hongyuan Zhang, and Yi Ding*. DNA methylation changes in photoperiod - thermo-sensitive male sterile rice PA64S under the two different conditions. Gene 2014, 537(1):143-148 16.Jihong Hu, Lulu Sun, Zhixuan Zhu, Yuan Zheng, Wei Xiong, and Yi Ding*. Characterization of conserved microRNAs from five different cucurbit species using computational and experimental analysis. Biochimie 2014,102:137-144 17.Zhihua Wu, Songtao Gui, Shuzhen Wang, and Yi Ding*. Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms. BMC Evolutionary Biology2014, 14:100 18.Junjie Yan, Han Tian, Shuzhen Wang, Jinzhen Shao, Yinzhen Zheng, Hongyuan Zhang, Lin Guo, and Yi Ding*. Proteomics analysis identified pollen developmental defects in the rice ZD-CMS line. Journal of Proteomics 2014,108:110-123 19.Rong Yi, Zhixuan Zhu, Jihong Hu, Qian Qian, Jincheng Dai and Yi Ding*. Identification and expression analysis of microRNAs at the grain filling stage in rice(Oryza sativa L.)via deep sequencing.PLOS ONE 2013, 8(3): e57863

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