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Ivy, J.A., A.S. Putnam, A.Y. Navarro, J. Gurr, and O.A. Ryder. 2016. Applying SNP-derived molecular ancestry estimates to captive breeding programs. Journal of Heredity 107(5). 403-412.
Saragusty, J., S. Diecke, M. Drukker, B.S. Durrant, I.F. Ben-Nun, C. Galli, F. Goritz, K. Hayashi, R. Hermes, S. Holtze, S. Johnson, G. Lazzari, P. Loi, J.F. Loring, K. Okita, M.B. Renfree, S. Seet, T. Voracek, J. Stejskal, O.A. Ryder, and T.B. Hildebrandt. 2016. Rewinding the Process of Mammalian Extinction. Zoo Biology 9999. 1-13.
Yu, L., G-D. Wang, J. Ruan, Y-B. Chen, C-P. Yang, X. Cao, H. Wu, Y-H. Liu, Z-L. Du, X-P. Wang, J. Yang, S-C. Cheng, L. Zhong, L. Wang, X. Wang, J-Y. Hu, L. Fang, B. Bai, K-L. Wang, N. Yuan, S-F. Wu, B-G. Li, J-G. Zhang, Y-Q. Yang, C-L. Zhang, Y-C. Long, H-S. Li, J-Y. Yang, D.M. Irwin, O.A. Ryder, Y. Li, C-I. Wu, and Y-P. Zhang. 2016. Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation. Nature Genetics 48(8). 947-955.
Bosse, M., H-J. Megens, O. Madsen, R.P.M.A. Crooijmans, O.A. Ryder, F. Austerlitz, M.A.M. Groenen, and M.A.R. de Cara. 2015. Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations. Genome Research 25. 970-981.
Buchalski, M.R., A.Y. Navarro, W.M. Boyce, T. Winston Vickers, M.W. Tobler, L.A. Nordstrom, J.A. Garcia, D.A. Gille, M.C.T. Penedo, O.A. Ryder, and H.B. Ernest. 2015. Genetic population structure of Peninsular bighorn sheep (Ovis canadensis nelsoni) indicates substantial gene flow across US–Mexico border. Biological Conservation 184. 218-228.
Fisch, K.M., C.C. Kozfkay, J.A. Ivy, and O.A. Ryder. 2015. Fish hatchery genetic management techniques: Integrating theory with implementation. North American Journal of Aquaculture 77. 343-357.
Koepfli, K.-P., B. Paten, The Genome 10K Community of Scientists, C. Steiner, O. Ryder, and S.J. O’Brien. 2015. The genome 10K project: A way forward. Annual Review of Animal Biosciences 3. 57-111.
Nam, K., K. Munch, A. Hobolth, J.Y. Dutheil, K.R. Veeramah, A.E. Woerner, M.F. Hammer, Great Ape Genome Diversity Project, O.A. Ryder, T. Mailund, and M.H. Schierup. 2015. Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences 112. 6413-6418.
Steiner, C.C., S.J. Charter, N. Goddard, H. Davis, M. Brandt, M.L. Houck, and O.A. Ryder. 2015. Chromosomal variation and perinatal mortality in San Diego Zoo Soemmerring’s gazelles. Zoo Biology 9999. 1-11.
Wisely, S.M., O.A. Ryder, J.F. Santymire, Engelhardt, and B.J. Novak. 2015. A road map for 21st century genetic restoration: Gene pool enrichment of the black-footed ferret. Journal of Heredity 106. 581-592.
Liu, J., X. Wang, S. Cho, B.K. Lim, D.M. Irwin, O.A. Ryder, Y. Zhang, and L. Yu. 2014. Evolutionary and functional novelty of pancreatic ribonuclease: A study of Musteloidea (order Carnivora). . Scientific Reports. DOI: 10.1038/srep05070.
O’Brien, S.J., D. Haussler, and O.A. Ryder. 2014. The birds of Genome10K. GigaScience 3. 32.
Steiner, C.C., S.J. Charter, M.L. Houck, and O.A. Ryder. 2014. Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae). Journal of Heredity 105. 324-333.
Evans, J.D., S.J. Brown, K.J. Hackett, G. Robinson, S. Richards, D. Lawson, C. Elsik, J. Coddington, O. Edwards, S. Emrich, T. Gabaldon, M. Goldsmith, G. Hanes, B. Misof, M. Munoz-Torres, O. Niehuis, A. Papanicolaou, M. Pfrender, M. Poelchau, M. Purcell-Miramontes, H.M. Robertson, O.A. Ryder, D. Tagu, T. Torres, E. Zdobnov, G. Zhang, and X. Zhou. 2013. The i5K Initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment. Journal of Heredity 104. 594-600.
Luan, P.-T., O.A Ryder, H. Davis, Y.-P. Zhang, and L. Yu. 2013. Incorporating indels as phylogenetic characters: Impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora). . Molecular Phylogenetics and Evolution 66. 748–756.
Moser, A.B., J. Hey, P.K. Dranchak, M.W. Karaman, J. Zhao, L.A. Cox, O.A. Ryder, and J.G. Hacia. 2013. Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells. Lipids in Health and Disease. DOI: 10.1186/1476-511X-12-10.
Orlando, L., A. Ginolhac, G. Zhang, D. Froese, A. Albrechtsen, M. Stiller, M. Schubert, E. Cappellini, B. Petersen, I. Moltke, P.L. Johnson, M. Fumagalli, J.T. Vilstrup, M. Raghavan, T. Korneliussen, A.S. Malaspinas, J. Vogt, D. Szklarczyk, C.D. Kelstrup, J. Vinther, A. Dolocan, J. Stenderup, A.M. Velazquez, J. Cahill, M. Rasmussen, X. Wang, J. Min, G.D. Zazula, A. Seguin-Orlando, C. Mortensen, K. Magnussen, J.F. Thompson, J. Weinstock, K. Gregersen, K.H. Roed, V. Eisenmann, C.J. Rubin, D.C. Miller, D.F. Antcza, M.F. Bertelsen, S. Brunak, K.A. Al-Rasheid, O.A. Ryder, L. Andersson, J. Mundy, A. Krogh, M.T. Gilbert, K. Kjær, T. Sicheritz-Ponten, L.J. Jensen, J.V. Olsen, M. Hofreiter, R. Nielsen, B. Shapiro, J. Wang, and E. Willerslev. 2013. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 499. 74-78.
Prado-Martinez, J., P.H. Sudmant, J.M. Kidd, H. Li, J.L. Kelley, B. Lorente-Galdos, K.R. Veeramah, A.E. Woerner, T.D. O’Connor, G. Santpere, A. Cagan, C. Theunert, F. Casals, H. Laayouni, K. Munch, A. Hobolth, A.E. Halager, M. Malig, J. Hernandez-Rodriguez, I. Hernando-Herraez, K. Prufer, M. Pybus, L. Johnstone, M. Lachmann, C. Alkan, D. Twigg, N. Petit, C. Baker, F. Hormozdiari, M. Fernandez-Callejo, M. Dabad, M.L. Wilson, L. Stevison, C. Camprubí, T. Carvalho, A. Ruiz-Herrera, L. Vives, M. Mele, T. Abello, I. Kondova, R.E. Bontrop, A. Bontrop, F. Lankester, J.A. Kiyang, R.A. Bergl, E. Lonsdorf, S. Myers, M. Ventura, P. Gagneux, D. Comas, H. Siegismund, J. Blanc, L. Agueda-Calpena, M. Gut, L. Fulton, S.A. Tishkoff, J.C. Mullikin, R.K. Wilson, I.G. Gut, M.K. Gonder, O.A. Ryder, B.H. Hahn, A. Navarro, J.M. Akey, J. Bertranpetit, D. Reich, T. Mailund, M.H. Schierup, C. Hvilsom, A.M. Andres, J.D. Wall, C.D. Bustamante, M.F. Hammer, E.E. Eichler, and T. Marques-Bonet. 2013. Great ape genetic diversity and population history. Nature 499. 471-475.
Steiner, C.C, and O.A. Ryder. 2013. Characterization of Prdm9 in equids and sterility in mules. PLoS One 8. e61746.
Steiner, C.C, A.S. Putnma, P.E.A. Hoeck, and O.A. Ryder. 2013. Conservation genomics of threatened animal species. Annual Review of Animal Biosciences 1. 261-281.
Bernardi, G., E.O. Wiley, H. Mansour, M.R. Miller, G. Orti, D. Haussler, S.J. O’Brien, O.A. Ryder, and B. Venkatesh. 2012. The fishes of Genome 10K. Marine Genomics 7. 3-6.
Dennis, P., S. Ellis, J. Mellen, P. Lee, F. Olea-Popelka, A. Petric, and O.A. Ryder. 2012. IOD in rhinos--epidemiology group report: Report from the epidemiology working group of the international workshop on iron overload disorder in browsing rhinoceros (February 2011). . Journal of Zoo and Wildlife Medicine 43. 114-116.
Frankham, R., J.D. Ballou, M.R. Dudash, M.D.B. Eldridge, C.B. Fenster, R.C. Lacy, J.R. Mendelson, I.J. Porton, K. Ralls, and O.A. Ryder. 2012. Implications of different species concepts for conserving biodiversity. . Biological Conservation 153. 25-31.
McCue, M.E., D.L. Bannasch, J.L. Petersen, J. Gurr, E. Bailey, M.M Binns, O. Distl, G. Guerin, T. Hasegawa, E.W. Hill, T. Leeb, G. Lindgren, M.C.T. Penedo, K.H. Roed, O.A. Ryder, J.E. Swinburne, T. Tozaki, S.J. Valberg, M. Vaudin, K. Lindblad-Toh, C.M. Wade, and J.R. Mickelson. 2012. A high density SNP array for the domestic horse and extant Perissodactyla: Utility for association mapping, genetic diversity, and phylogeny studies. PLoS Genetics 8. e1002451.