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Isoda, T., Moore, A., He, Chandra, V., Aida, M., Denholtz, van Hamburg, J.P., Fisch, K., Chang, A.N., Fahl, S. Wiest, D.L. and Murre, C. 2017. Non-Coding Transcription Instructs Cohesin-Dependent Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate. Cell 171, 103-119.
Miyazaki, M., Miyazaki, K., Chen, K., Jin, Y., Turner, J., Moore, A.J., Saito, R., Yoshida, K., Ogawa, S., Rodewald, H.R., Lin, Y.C., Kawamoto, H. and Murre C. 2017. The E-Id protein axis specifies adaptive lymphoid cell identity and suppresses thymic innate lymphoid cell development. Immunity 46, 818-834.
Zhu, Y., Gong, K., Denholtz, M., Chandra, V., Kamps, M.P., Alber, F. and Murre, C. (2017). Comprehensive characterization of neutrophil genomes. Genes Dev. 31, 141-153.
Miyazaki. M., Miyazaki, K., Chen, S.Y., Chandra, V., Agata, Y., Chang, A., Kawamoto, H. and Murre, C. 2015. The E-Id protein axis modulates the activities of the PI3K-AKT-mTORC1-Hif1a and c-myc/p19Arf pathways to suppress innate variant TFH cell development, thymocyte expansion and lymphomagenesis. Genes Dev. 29, 409-425.
Bossen, Murre, C.S., Chang, A.N., Mansson, R., Rodewald, H.R. and Murre, C. 2015. The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth. Nat. Immunol. 16, 775-784.
Lucas, J.S., Zhang, J., Dudko, O.S. and Murre, C. 2014. The 3-D trajectories adopted by the immunoglobulin heavy chain locus: First-passage times and long-range genomic interactions. Cell 158, 339-352.
The 3-D trajectories adopted by coding and regulatory DNA elements: First-passage times for genomic interactions. Lucas JS, Zhang J, Dudko OS, Murre C. Cell 158, 339-352 (2014).
Id2 and Id3 maintain the regulatory T cell pool to suppress inflammatory disease. Miyazaki M, Miyazaki K, Chen SY, Itoi M, Miller M, Lu L-F, Varki N, Chang A, Broide DH, Murre C. Nat Immunol 15, 767-776 (2014)
The establishment of B versus T cell identity. Miyazaki K, Miyazaki M, Murre C. Trends Immunol 35, 205-210 (2014)
Boosting lymphocyte production. Murre C. Immunity 38, 1081-1083 (2013)
Nuclear location and the control of developmental progression. Lin YC, Murre C. Curr Opion Genet Dev 23, 104-108 (2013)
A HESitant decision for T cells. Bortnick A, Murre C. Nat Immunol 14, 1209-1210 (2013)
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate. Lin YC, Benner C, Mansson R, Heinz S, Miyazaki M, Miyazaki K, Chancera V, Bossen C, Glass CK, Murre C. Nat Immunol 12,1196-1204 (2012)
Chromatin topology and the regulation of antigen receptor assembly. Bossen C, Mansson R, Murre C . Annual Rev Immunol 30, 337-356 (2012)
Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate. Mansson R, Welinder E, Ashber J, Lin YC, Benner C, Glass CK, Sigvardsson M, Murre C. Proc Natl Acad. Sci USA 108, 17402-17407 (2012)
Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineage in hematopoietic progenitors. Mercer EM, Lin YC, Jhunjhunwala S, Dutkowski J, Flores M, Sigvardsson M, Ideker T, Glass CK, Murre C. Immunity 35, 413-425 (2011)
The opposing roles of the transcription factor E2A and its antagonist Id3 that orchestrate and enforce the naïve fate of T cells. Miyazaki M, Rivera RR, Miyazaki K, Lin YC, Agata Y, Murre C. Nat Immunol 12, 992-1001 (2011)
E2A and HEB act in concert to induce the expression of FOXO1 in the common lymphoid progenitor . Welinder E, Mansson R, Mercer EM, Bryder D, Sigvardsson M, Murre C. Proc Natl Acad Sci USA 108, 17402-17407 (2011)
CTCF-binding elements mediate control of V(D)J recombination. Guo C, Yoon HS, Franklin A, Jain S, Ebert A, Cheng HL, Hansen E, Despo O, Bossen C, Vettermann C, Bates JG, Richards N, Myers D, Patel H, Gallagher M, Schlissel MS, Murre. C, Busslinger M, Giallourakis CC, Alt FW. Nature 477, 424-430 (2011)
Transcription and recombination factories: Common features? . Lucas JL, Bossen C, Murre C. Curr Opin Cell Biol 23, 318-324 (2011)
Ldb1, a new guardian of hematopoietic stem cell maintenance. Welinder E, Murre C. Nat Immunol 12, 113-114 (2011)
CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells. Degner SC, Verma-Gaur J, Wong TP, Bossen C, Iverson GM, Torkamani A, Vettermann C, Lin YC, Ju Z, Schulz D, Murre CS, Birshtein BK, Schork NJ, Schlissel MS, Riblet R,. Murre C, Feeney AJ Proc Natl Acad Sci USA 108, 9566-9571 (2011)
Factors and networks that underpin early hematopoiesis. Mercer EM, Lin YC, Murre C. Semin Immunol 5, 317-325 (2011)
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. Lin YC, Jhunjhunwala S, Benner C, Heinz S, Welinder E, Mansson R, Sigvardsson M, Hagman J, Espinoza A, Dutkowski J, Ideker T, Glass CK, Murre C. Nat Immunol 11, 635-643 (2010)