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DeBoever C, Li H, Arias A, Reyna J, Olson K M, Hui H, Biggs W, Sandoval E, Hiroko M, Ren, B, Benaglio P, Nariai N, Smith E, D'Antonio-Chronowska, A, *Farley E K, *Frazer, K A. (in Press). Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells. Cell Stem Cell.
Farley, E. K., Olson, K. M., Zhang, W., Rokhsar, D. S., & Levine, M. S. (2016). Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proceedings of the National Academy of Sciences, 113(23), 6508-6513. doi:10.1073/pnas.1605085113
Farley, E. K., Olson, K. M., Zhang, W., Brandt, A. J., Rokhsar, D. S., & Levine, M. S. (2015). Suboptimization of developmental enhancers. Science, 350(6258), 325-328. doi:10.1126/science.aac6948
Farley, E. K., Olson, K. M., & Levine, M. S. (2015). Regulatory Principles Governing Tissue Specificity of Developmental Enhancers. Cold Spring Harbor Symposia on Quantitative Biology, 80, 27-32. doi:10.1101/sqb.2015.80.027227
Farley, E. K. (2013). Gene Transfer in Developing Chick Embryos: In Ovo Electroporation. Methods in Molecular Biology Neural Development, 141-150. doi:10.1007/978-1-62703-444-9_14
Farley, E., & Levine, M. (2012). HOT DNAs: a novel class of developmental enhancers. Genes & Development, 26(9), 873-876. doi:10.1101/gad.192583.112
Farley, E. K., Gale, E., Chambers, D., & Li, M. (2011). Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis. Neural Development, 6(1), 17. doi:10.1186/1749-8104-6-17
Gennet, N., Gale, E., Nan, X., Farley, E., Takacs, K., Oberwallner, B., . . . Li, M. (2011). Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate. Proceedings of the National Academy of Sciences,108(22), 9131-9136. doi:10.1073/pnas.1016679108
Farley, E. K., Gale, E., Gennet, N., Nan, X., & Li, M. (2010). Novel transcription factor involved in neurogenesis. Developmental Biology, 344(1), 493. doi:10.1016/j.ydbio.2010.05.439