Gribskov, Michael - Purdue University - Department of Biological Sciences

个人简介

B.S. Oregon State University, 1979 Ph.D. University of Wisconsin-Madison, 1985

近期论文

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Suman M., Jannasch, A., Adamec, J., Gribskov, M., Thomas, N., H??k, T.O., Sepúlveda, M.S. “Metabolite Profiles in Starved Diporeia Spp. Using Liquid Chromatography-Mass Spectrometry (LC-MS) Based Metabolomics.” Journal of Crustacean Biology 32, 239-248, 2012. Gupta, A., Rahman, R., Li, K., Gribskov, M., “Comprehensive Prediction of RNA Structure Including Pseudoknots”, RNA Biology, 9, 188-200, 2012. Khadka, S., Vangeloff, A.D., Zhang, C., Siddavatam, P., Heaton, N.S., Wang, L., Sengupta, R., Sahasrabudhe, S., Randall, G., Gribskov, M., Kuhn, R.J., Perera, R., Lacount, D.J. “A physical interaction network of dengue virus and human proteins.” Molecular & Cellular Proteomics 10, M111.012187, 2011. Curran, A., Chang, I.-F., Chang, C.-L., Garg, S., Miguel, R.M., Barron, Y.D., Li, Y., Romanowsky, S., Cushman, J., Gribskov, M., Harmon, A.C., Harper, J.F., “Calcium-Dependent Protein Kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates”, Frontiers in Plant Physiology 2, article 36, 2011. Gupta, A., Gribskov, M., “The Role of RNA Sequence and Structure in RNA-Protein Interactions”, Journal of Molecular Biology 409, 574-587, 2011. Banks, J.A., Nishiyama, T., Hasebe, M., Bowman, J.L., Gribskov, M., dePamphilis, C., Albert, V.A., Aono, N., Aoyama, T., Ambrose, B.A., Ashton, N.W., Axtell, M.J., Barker, E., Barker, M.S., Bennetzen, J.L., Bonawitz, N.D., Chapple, C., Cheng, C., Correa, L.G.G., Dacre, M., DeBarry, J., Dreyer, I., Durnford, D.G., Elias, M., Engstrom, E.M., Estelle, M., Feng, L., Finet, C., Floyd, S.K., Frommer, W.B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K.G., Koehler, B., Kolukisaoglu, H.U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Loqué, D., Lyons, E., Manning, G., Maruyama, T., Michael, T.P., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-Roeber, B., Neilson, J.A.D., Nelson, D.R., Obara, M., Oguri, Y., Olmstead, R.G., Onodera, N., Petersen, B.L., Pils, B., Prigge, M., Rensing, S.A., Ria?o-Pachón, D.M., Roberts, A.W., Sato, Y., Scheller, H.V., Schulz, B., Schulz, C., Shakirov, E.V., Shibagaki, N., Shinohara, N., Shippen, D.E., S?rensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theissen, G., Ulvskov, P., Weng, J., Willats, W.W.G.T., Wipf, D., Wolf, P.G., Yang, L., Zimmer, A.D., Zhu, Q., Mitros, T., Helstein, U., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E., Lucas, S., Rokhsar, D., Grigoriev, I.V., "The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants.", Science 332, 960-963, 2011. Rohila, J.S., Chen, M., Chen, S., Chen, J., Cerny, R.L., Dardick, C., Canlas, P., Fujii, H., Gribskov, M., Kanrar, S., Knoflicek, L., Stevenson, B., Xie, M., Xu, X., Zheng, X., Zhu, J.K., Ronald, P., Fromm, M.E. “Protein-protein interactions of tandem affinity purified protein kinases from rice”. PLoS One 4, e6685, 2009. Coleman, J.J., Rounsley,S.D., Rodriguez-Carres,M., KuoA., Wasmann,C.C., Grimwood,J., Schmutz,J., Taga,M., White,G.J., Zhou,S., Schwartz,D.C., Freitag,M., Ma,L.-J., Danchin,E.GJ., Henrissat,B., Coutinho,P.M., Nelson,D.R., Straney,D., Napoli,C.A., Barker, B.M., Gribskov,M., Rep,M., Kroken,S., Molnár,I., Rensing,C., Kennell,J.C., Zamora, J., Farman,M.L., Selker,E.U., Salamov,A., Shapiro,H.,Pangilinan,J., Lindquist,E., Lamers,C., Grigoriev,I.V., Geiser,D.M., Covert,S.F., Temporini,E., VanEtten, H.D., "The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion", PLOS Genetics 5, e1000618. doi: 10.1371/journal.pgen.1000618, 2009. PDF PubMed PMID: 19714214. Ding, X., Richter, T., Chen, M., Fujii, H., Seo, Y.S., Xie, M., Zheng, X., Kanrar, S., Stevenson, R.A., Dardick, C., Li Y., Jiang, H., Zhang, Y., Yu, F., Bartley, L.E., Chern, M., Bart, R., Chen, X., Zhu, L., Farmerie, W.G., Gribskov, M., Zhu, J.K., Fromm, M.E., Ronald, P.C., Song, W.Y.. “A rice kinase-protein interaction map.” Plant Physiology 149, 1478-1492, 2009. Li, K., Rahman, R., Gupta, A., Siddavatam, P., Gribskov, M., "Pattern Matching in RNA Structures", Proceedings of International Symposium on Bioinformatics Research and Applications, 2008. Lecture Notes in Computer Science 4983, 317-330, 2008. Ranganathan, S., Gribskov, M., Tan, T.W. “Bioinformatics research in the Asia Pacific: a 2007 update.” BMC Bioinformatics 9 Suppl 1, S1, 2008. PubMed PMID: 18315840. Ryabov Y, Gribskov M. “Spontaneous symmetry breaking in genome evolution.” Nucleic Acids Research 36, 2756-2763, 2008. PubMed PMID: 18367477. Hu, J.C., Aramayo, R., Bolser, D., Conway, T., Elsik, C.G., Gribskov, M., Kelder, T., Kihara, D., Knight, T.F. Jr, Pico, A.R., Siegele, D.A., Wanner, B.L., Welch, R.D. “The emerging world of wikis.” Science. 320, 1289-1290, 2008. Gu, J., Gribskov, M., Bourne, P. E. "Wiggle - Predicting functionally flexible regions from primary sequence." Plos Computational Biology 2, 769-785, 2006. Niedner, R.H., Buzko, O.V., Haste, N.M., Taylor, A., Gribskov, M., Taylor, S.S. “Protein kinase resource: an integrated environment for phosphorylation research” Proteins 63, 78-86, 2006. PubMed PMID: 16435372. Rohila, J. S., Chen, M., Chen, S., Chen, J., Cerny, R., Dardick, C., Canlas, P., Xu, X., Gribskov, M., Kanrar, S., Zhu, J. K., Ronald, P., Fromm, M. E. 2006. Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. Plant Journal 46: 1-13. Tuskan, G. A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R. R., Bhalerao, R. P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G. L., Cooper, D., Coutinho, P. M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Dejardin, A., Depamphilis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehlting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjarvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leple, J. C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D. R., Nelson, C., Nieminen, K., Nilsson, O., Pereda, V., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouze, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C. J., Uberbacher, E., Unneberg, P. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 313: 1596-1604. Eide, D.J., Clark, S., Nair, T.M., Gehl, M., Gribskov, M., Guerinot, M.L. and Harper, J.F. “Characterization of the yeast ionome: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae”. Genome Biology 6, R77, PMID: 16168084, 2005.