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Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design, with A. Ferguson et al., Immunity, 38, 606-617 (2013).
“Coordinate linkage of HIV evolution reveals regions of immunological vulnerability”, with V Dahirel et al., Proc Natl. Acad. Sci, 108, 11530-11535 (2011).
Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection, Nature (2010)
Statistical mechanical concepts in immunology, Ann. Rev. Phys. Chem. (2010)
Seeing in numbers, Scientist (2010)
Pairing computational with experimentation: a powerful coupling for understanding T cell signaling, Nature Reviews Immunology (2010)
Digital signaling and hysteresis characterize ras activation in lymphoid cells, Cell (2009)
Efficient stochastic simulation of reaction-diffusion via direct compilation, Bioinformatics (2009)
Thymic selection of T cell receptors as an extreme value problem, Phys Rev Lett (2009)
How the thymus designs antigen-specific and self-tolerant T cell receptor sequences, PNAS (2008)
“The stimulatory potency of T cell antigens is influenced by the formation of the immunological synapse”, with S. Cemarski et al., Immunity (2007).
“CD4 Coordinates Lck Accumulation in the Immunological Synapse: Implications for the Sensitivity of T Cells to Antigen”, Nature Immunology (2004)
“The Immunological Synapse Balances T Cell Receptor Signaling and Degradation”, Science (2003)
Synaptic pattern formation during cellular recognition, PNAS (2001)
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