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Jasti, V., Das, R.S., Hilton, B.A., Weerasooriya, S., Zou, Y., and Basu, A.K. (2011) (5'S)-8,5'-cyclo-2'-deoxyguanosine is a strong block to replication, potent pol V-dependent mutagenic lesion, and is inefficiently repaired in Escherichia coli. Biochemistry 50, 3862-3865. [pdf]
Raychaudhury, P. and Basu, A.K. (2011) Genetic requirement for mutagenesis of G[8,5-Me]T cross-link in Escherichia coli: DNA polymerases IV and V compete for error-prone bypass. Biochemistry 50, 2330-2338. [pdf]
Basu, A.K. (2010) Mutagenesis: The outcome of faulty replication of DNA. Chapter 17 in: "Chemical Carcinogenesis" (Penning, T., ed) Springer, New York. pp 375-400.
Basu, A., Broyde, S., Iwai, S., and Kisker, C. (2010) DNA damage, mutagenesis, and DNA repair (editorial). Journal of Nucleic Acids Article ID 182894, 1 page, 2010. doi:10.4061/2010/182894. [pdf]
Raychaudhury, P. and Basu, A.K. (2010) Replication past the γ-radiation-induced guanine-thymine cross-link G[8,5-Me]T by human and yeast DNA polymerase η. Journal of Nucleic Acids Article ID 101495, 10 pages, 2010. doi:10.4061/2010/101495. [pdf]
Weng, M.-w., Zheng, Y., Jasti, V.P., Champeil, E., Tomasz, M., Wang, Y., Basu, A.K., and Tang, M.-s. (2010) Repair of mitomycin C mono- and interstrand cross-linked DNA adducts by UvrABC: a new model. Nucleic Acids Res. 38, 6976-6984. [pdf]
Brown, K.L., Roginskaya, M., Zou, Y., Altamirano, A., Basu, A.K., and Stone, M.P. (2010) Binding of the human nucleotide excision repair proteins XPA and XPC/HR23B to the 5R-thymine glycol lesion and structure of the cis-(5R,6S) thymine glycol epimer in the 5'-GTgG-3' sequence: Destabilization of two base pairs at the lesion site. Nucleic Acids Res. 38, 428 - 440. [pdf]
Brown, K.L., Roginskaya, M., Zou, Y., Altamirano, A., Basu, A.K., and Stone, M.P. (2010) Structural consequences of epimerization of thymine glycol lesions in duplex DNA: Implications for DNA repair. Structural Biology of DNA Damage and Repair, Chapter 2, pp 11-28. ACS Symposium Series, Volume 1041. [pdf]
Brown, K.L., Basu, A.K., and Stone, M.P. (2009) The cis-(5R,6S)-thymine glycol lesion occupies the wobble position when mismatched with dG in DNA. Biochemistry 48, 9722-9733.[pdf]
Sherrer, S.M., Brown, J.A., Pack, L.R., Jasti, V.P., Fowler, J.D., Basu, A.K., and Suo, Z. (2009) Mechanistic studies of the bypass of a bulky single-base lesion catalyzed by a Y-family DNA polymerase. J. Biol. Chem. 284, 6379-6388. [pdf]
Colis, L.C., Chakraborti, D., Hilario, P., McCarty, C., and Basu, A.K. (2009) Synthesis of oligonucleotides containing 2'-deoxyguanosine adducts of nitropyrenes. Nucleosides, Nucleotides, and Nucleic Acids 28, 67-77.[pdf]
Colis, L.C., Raychaudhury, P., and Basu, A.K. (2008) Mutational specificity of γ-radiation-induced guanine-thymine and thymine-guanine intrastrand cross-links in mammalian cells and translesion synthesis past the guanine-thymine lesion by human DNA polymerase η. Biochemistry 47, 8070-8079. [pdf]
Brown, K.L., Adams, T., Jasti, V.P., Basu, A.K., and Stone, M.P. (2008) Interconversion of the cis-5R,6S- and trans-5R,6R-thymine glycol lesions in duplex DNA. J. Am. Chem. Soc. 130, 11701-11710. [pdf]
Tolentino, J.H., Burke, T.J., Mukhopadhyay, S., McGregor, W.G. and Basu, A.K. (2008) Inhibition of DNA replication fork progression and mutagenic potential of 1, N6-ethenoadenine and 8-oxoguanine in human cell extracts. Nucleic Acids Res. 36, 1300-1308. [pdf] Tolentino_NAR_2008.pdf
Watt, D.L., Utzat, C.D., Hilario, P., and Basu, A.K. (2007) Mutagenicity of the 1-nitropyrene-DNA adduct N-(deoxyguanosin-8-yl)-1-aminopyrene in mammalian cells. Chem. Res. Toxicol. 20, 1658-1664. [pdf]
Yang, Z., Roginskaya, M., Colis, L.C., Basu, A.K., Shell, S.M., Liu, Y., Musich, P.R., Harris, C.M., Harris, T.M. and Zou, Y. (2006) Specific and efficient binding of XPA to double-strand/single-strand DNA junctions with 3'- and 5'-ssDNA branches. Biochemistry 45, 15921-15930. [pdf]
Ocampo-Hafalla, M.T., Chan, M.K., Altamirano, A., Basu, A.K., Cummings, Jr., A., Boorstein, R.J., Cunningham, R.P., and Teebor, G.W. (2006) Repair of thymine glycol by hNth1 and hNeil1 is modulated by base pairing and cis-trans epimerization. DNA Repair 5, 444-454.[pdf]
Kalam, M.A., Haraguchi, K., Chandani, S., Loechler, E.L., Moriya, M., Greenberg, M.M., and Basu, A.K. (2006) Genetic Effects of Oxidative DNA Damages: Comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells. Nucleic Acids Res. 34, 2305-2315.[pdf]
Yang, Z., Colis, L.C., Basu, A.K., and Zou, Y. (2005) Recognition and incision of γ-radiation-induced cross-linked guanine-thymine tandem lesion G[8,5-Me]T by UvrABC nuclease. Chem. Res. Toxicol. 18, 1339-1346. [pdf]
Kalam, M.A. and Basu, A.K. (2005) Mutagenesis of 8-oxoguanine adjacent to an abasic site in simian kidney cells: Tandem mutations and enhancement of G→T transversions. Chem. Res. Toxicol. 18, 1187-1192. [pdf]