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J. F. Smith, M. Amaya-Marquez, O. H. Marin-Gomez, and J. L. Clark. 2013. Four new species of Columnea (Gesneriaceae) with primary distributions in Colombia. submitted to Journal of the Botanical Research Institute of Texas. 7: 667-679.
Smith, J. F., M. T. Ooi, L. Schulte, M. Amaya-Marquez, and J. L. Clark. 2013. Searching for monophyly in the subgeneric classification systems of Columnea (Gesneriaceae). Selbyana 31: 126-142.
Ning, A.-L., J. Wang, J. F. Smith, and M. Kang. 2013. Primulina qingyuanensis sp. nov. (Gesneriaceae) from limestone areas in Guangdon, China. Phytotaxa 137: 48-52.
Gaskin, J. F., M. Schwarzl?nder, C. L. Kinter, J. F. Smith and S. J. Novak, . Propagule pressure, genetic structure and geographic origins of Chondrilla juncea (Asteraceae): An invader on three continents. American Journal of Botany 100: 1871-1882.
J. F. Smith and J. L. Clark. 2013. Molecular phylogenetic analyses reveal undiscovered monospecific genera in Episcieae (Gesneriaceae). Systematic Botany 38: 451-463.
Ning, Z.-L., G.-F. Li, J. Wang, J. F. Smith, H. Rasolonjatove, and M. Kang. 2013. Primulina huaijiensis (Gesneriaceae) a new species from Guangdon, China. Acta Botanica Fennici 50: 119-122.
Clay, D. L., D. C. Tank, S. J. Novak, M. D. Serpe, and J. F. Smith. 2012. Homoploid hybrid speciation in a rare endemic Castilleja from Idaho (Castilleja christii, Orobanchaceae). American Journal of Botany 99: 1976-1990.
Amaya M., M. and J. F. Smith. 2012. Columnea paraguensis (Gesneriaceae) a remarkable and rare new species from Colombia. Rev. Acad. Colomb. Cienc. 36: 137-140.
Clark, J. L., M. M. Funke, A. M. Duffy, and J. F. Smith. 2012. Phylogeny of a Neotropical clade in the Gesneriaceae: More tales of convergent evolution International Journal of Plant Sciences. 173: 894-916. Featured on cover.
Schubert, H. K., A. J. Bornstein, M. S. Taylor, and J. F. Smith. 2012. A Systematic Revision of the Genus Manekia (Piperaceae). Systematic Botany 37: 587-598. Featured on cover.
Carlson, K. M., D. H. Mansfield, and J. F. Smith. 2011. A new variety of Lomatium ravenii (Apiaceae) from the northern Great Basin and adjacent Owyhee region. Aliso 29(2):105-114.
Symmank, L., M.-S. Samain, J. F. Smith, G. Pino, A. Stoll, P. Goetghebur, C. Neinhuis, and S. Wanke. 2011. The extraordinary journey of Peperomia subgenus Tildenia (Piperaceae): insights into diversification and colonization patterns from its cradle in Peru to the Tans-Mexican volcanic belt. Journal of Biogeography. 38: 2337-2349.
Clark, J. L. and J. F. Smith. 2011. Columnea pygmaea, a new small-flowered species from Ecuador. Journal of the Botanical Research Institute of Texas 5: 87-95.
Carlson, K. M, D. H. Mansfield, and J. F. Smith. 2011. A New Species in the Lomatium foeniculaceum (Apiaceae) Clade Revealed Through Combined Morphometric and Phylogenetic Analyses. Systematic Botany 36: 495-507. Featured on cover.
Woo, V. L., Smith, J. F., M. M. Funke, P. J. Lockhart, and P. J. Garnock-Jones. 2011. Phylogenetic relationships in Coronanthereae (Gesneriaceae) reveal multiple introductions from South America into the Pacific. International Journal of Plant Sciences 172: 434-457.
Wang, Y.-Z., R.-B. Mao, Y. Li, J.-M. Li, Y. Dong, Z.-Y. Li, and J. F. Smith.. 2011. Phylogenetic reconstruction of Chirita and allies (Gesneriaceae) with taxonomic treatments. Journal of Systematics and Evolution.49: 50-64.
Smith, J. F., D. N. Perkins, C. Bjork, and G. Glenne. 2010. AFLP analyses reveal species boundaries within Pyrrocoma (Asteraceae). Madro?o. 57: 95-105.
Smith, J. F. , A. J. Stillman, S. R. Larson. C. M. Culumber, I. C. Robertson , and S. J. Novak. 2009. Phylogenetic relationships among Lepidium papilliferum (L. Henderson) A. Nels & J. F. Macbr., L. montanum Nutt., and L. davisii Rollins (Brassicaceae). Journal of the Torrey Botanical Club 136: 149-163.