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Sun, K., K.A. Meicklejohn, B. Faircloth, T. Glenn, E.L. Braun, and R.T. Kimball. In press. The evolution of peafowl and other taxa with ocelli (eyespots): A phylogenomic approach. In press. Proceedings of the Royal Society of London, B.
Crawford, D.J., M. Tadesse, R.T. Kimball, M.E. Mort, P. Carrillo-Reyes and I. Sanchez-Vega. In press. Coreopsis section Pseudoagarista (Asteraceae: Coreopsideae): Molecular phylogeny, chromosome numbers, and comments on taxonomy and distribution. Taxon.
Kimball, R.T. and E.L. Braun. 2014. Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix. PeerJ 2:e361.
Meicklejohn, K.A., M.J. Danielson, E.L. Braun, B.C. Faircloth, T. C. Glenn, and R.T. Kimball. 2014. Incongruence among different mitochondrial regions: A case study using complete mitogenomes. Molecular Phylogenetics and Evolution 78: 314-323. PDF
Kimball, R.T., N. Wang , C.N. Ferguson , V. Heimer-McGinn , and E.L. Braun. In Press. Identifying localized biases in large datasets: A case study using the Avian Tree of Life. Molecular Phylogenetics and Evolution. PDF
Patel, S., R.T. Kimball, E.L. Braun. In Press. Error in Phylogenetic Estimation for Bushes in the Tree of Life. Journal of Phylogenetics and Evolutionary Biology 1:110. PDF
Sun, K., L. Luo, R.T. Kimball, X. Wei, L. Jin, T. Jiang, G. Li and J. Feng. 2014. Geographic variation in the acoustic traits of greater horseshoe bats: testing the importance of drift and ecological selection in evolutionary processes. PLoS One: 8 e70368.
Wang, N., R.T. Kimball, E.L. Braun, B. Liang, Z. Zhang. 2013. Assessing phylogenetic relationships among Galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae. PLOS One: 8: e64312.
Yuri, T., R.T. Kimball, J. Harshman, R.C.K. Bowie, M.J. Braun, J.L. Chojnowski, K-L Han, Hackett, S.J., C.J. Huddleston, W.S. Moore, S. Reddy, F.H. Sheldon, D.W. Steadman, C.C. Witt, and E.L. Braun. 2013. Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals. Biology 2: 419-444. PDF
Smith, J.V., E.L. Braun and R.T. Kimball. 2013. Ratite non-monophyly: Independent evidence from 40 novel loci. Systematic Biology 62: 45-49. PDF
Wang, N. and R.T Kimball. 2012. Nestmate killing by obligate brood parasitic chicks: Is this linked to obligate siblicidal behavior? Journal of Ornithology 153: 825-31. PDF
Wang, N., E.L. Braun, and R.T. Kimball. 2012. Testing hypotheses about the sister group of the Passeriformes using an independent 30 locus dataset. Molecular Biology and Evolution 29: 737-750. PDF
Braun, E.L., R.T. Kimball, K-L Han, N.R. Iuhasz-Velez, A.J. Bonilla, J.L. Chojnowski, J.V. Smith, R.C.K. Bowie, M.J. Braun, Hackett, S.J., J. Harshman, C.J. Huddleston, B.D. Marks, K.J. Miglia, W.S. Moore, S. Reddy, F.H. Sheldon, C.C. Witt and T. Yuri. 2011. Homoplastic microinversions and the avian tree of life. BMC Evolution 11: 141. PDF
Kimball, R.T., C.M. St. Mary, and E.L. Braun. 2011. A macroevolutionary perspective on multiple sexual traits in the Phasianidae (Galliformes). International Journal of Evolutionary Biology. Article ID: 423938, doi:10.4061/2011/423938. PDF
Han, K-L, E.L. Braun, R.T. Kimball, S. Reddy, R.C.K. Bowie, M. J. Braun, J.L. Chojnowski, S.J. Hackett, J. Harshman, C.J. Huddleston, B.D. Marks, K.J. Miglia, W.S. Moore, F.H. Sheldon, D.W. Steadman, C.C. Witt and T. Yuri. 2011. Are transposable element insertions homoplasy free? An examination of the avian tree of life. Systematic Biology 60: 375-386. PDF
Haas, S.E., J.A. Cox, J.V. Smith, and R.T. Kimball. 2010. Fine-scale spatial genetic structure in the cooperatively breeding Brown-Headed Nuthatch (Sitta pusilla). Southeastern Naturalist. Southeastern Naturalist 9: 743-756. PDF
Lomáscolo, S., D. Levey, R.T. Kimball, and B. Bolker. 2010. Dispersers shape fruit diversity in the genus Ficus (Moraceae). Proceedings of the National Academy of Sciences 107: 14668-14672. PDF
Bonilla, A.J., E.L. Braun, and R.T. Kimball. 2010. Comparative molecular evolution and phylogenetic utility of 3’-UTRs and introns in Galliformes. Molecular Phylogenetics and Evolution 56: 536-542. PDF
Whiteman, N.K., S.V. Dosanjh, R. Palma, J. Hull, R.T. Kimball, P. Sanchez, J.H. Sarasola, P.G. Parker. 2009. Molecular and morphological divergence in a pair of bird species and their ectoparasites. Journal of Parasitology 95: 1372–1382. PDF
Kimball, R. T., E. L. Braun, R. C. K. Bowie, M. J. Braun, J.L. Chojnowsk, S. J. Hackett, K-L Han, J. Harshman, V. Heimer-Torres, C. J. Huddleston, B. D. Marks, K. J. Miglia, W.S. Moore, S. Reddy, F.H. Sheldon, J. V. Smith, C. C. Witt, and T. Yuri. 2009. A well-tested set of resources to amplify nuclear regions across the avian genome. Molecular Phylogenetics and Evolution 50: 654-660. PDF
Krakauer, A. and R.T. Kimball. 2009. Interspecific brood parasitism in galliform birds. Ibis 151 373-381. PDF
Haas, S.E., J.V. Smith, R.T. Kimball, and A.M. Clark. 2009. Isolation and characterization of polymorphic microsatellite markers for the brown-headed nuthatch (Sitta pusilla). Conservation Genetics 10: 1393-1395. PDF
Haas, S.E., R.T. Kimball, J. Martin, and W. Kitchens. 2008. Genetic divergence among snail kite subspecies: implications for the conservation of the endangered Florida snail kite (Rostrhamus sociabilis). Ibis 151: 181-185. PDF
Crawford, D.J., M. Tadesse, M.E. Mort, R.T. Kimball, and C.P. Randle. 2009. Coreopsideae. Pp. 713-730 in Systematics, Evolution, and Biogeography of Compositae. Funk, V.A., A. Susanna, T.F. Stuessy, and R.J. Bayer, eds. International Association of Plant Taxonomy (Sheridan Press, Ann Arbor). PDF
Funk, V.A., A.A. Anderberg, B.G. Baldwin, R.J. Bayer, M. Bonifacino, I. Breitwieser, L. Brouillet, R. Carbajal, R. Chan, A.X.P. Coutinho, D.J. Crawford, J.J.V. Crisci, M.O. Dillon, S.E. Freire, M. Galbany-Casals, N. Garcia-Jacas, B. Gemeinholzer, M. Gruenstaeudl, H.W. Lack, H.V. Hansen, S. Himmelreich, J.W. Kadereit, M. K?llersj?, V. Karaman-Castro, P.O. Karis, L. Katinas, S. Keeley, N. Kilian, R.T. Kimball, T.K. Lowrey, J. Lundberg, R.J. McKenzie, M.E. Mort, B. Nordenstam, C. Oberprieler, S. Ortiz, J.L. Panero, P.B. Pelser, C.P. Randle, H. Robinson, N. Roque, G. Sancho, E. Schilling, J.C. Semple, M. Serrano, R. Smissen, T.F. Stuessy, A. Susanna, M. Tadesse, M. Unwin, L. Urbatsch, E. Urtubey, J. Vallès, R. Vogt, S. Wagstaff, J. Ward, and L.E. Watson. 2009. Compositae Meta-supertree: The Next Generation. Pp. 747-777in Systematics, Evolution, and Biogeography of Compositae. V.A. Funk, A. Susanna, T.F. Stuessy, and R. J. Bayer, eds. Vienna: International Association of Plant Taxonomy. (Printed by Sheridan Press, Ann Arbor). PDF
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