LEMMON, EMILY C. - Florida State University

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Ph.D., University of Texas, Austin, 2007

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Engebretsen K., L. Barrow, E. Rittenmeyer, J.M. Brown, and E. Moriarty Lemmon. Submitted. Quantifying the spatio-temporal dynamics in a chorus frog hybridization zone (Pseudacris) over 30 years. Evolution. Chen, X., A. R. Lemmon, E. Moriarty Lemmon, R. A. Pyron, and F. T. Bubrink. Comparing methods for estimating the phylogeny of ratsnakes from phylogenomic data. In revision. Breinholt, J. W., A. R. Lemmon, E. Moriarty Lemmon, L. Xiao, and A. Y. Kawahara. Anchored hybrid enrichment in Lepidoptera: Leveraging genomic data for studies on the megadiverse butterflies and moths. In revision. Lemmon, E. Moriarty and T. Juenger. Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris). In revision. Dornburg, A., J. Townsend, E. Spriggs, R. Eytan, J. Moore, P. Wainwright, A. Lemmon, E. Moriarty Lemmon, T. Near. Submitted. Phylogenomic informativeness facilitates resolution of the sister lineage of Percomorph fishes with an Anchored Hybrid Enrichment dataset. Molecular Phylogenetics and Evolution. Pyron, A. R., C. R. Hendry, F. Hsieh, A. R. Lemmon, E. Moriarty Lemmon. Submitted. A generalized integrative approach to genomic phylogeography and species delimitation in Brown and Red-bellied snakes (Storeria). Molecular Ecology. Edwards, S. V., Z. Xi, A. Janke, B. C. Faircloth, J. E. McCormack, T. C. Glenn, B. Zhong, S. Wu, E. Moriarty Lemmon, A. R. Lemmon, A. D. Leache, L. Liu, C. C. Davis. In press. Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. Funk, W. C., M. A. Murphy, K. L. Hoke, E. Muths, S. M. Amburgey, E. Moriarty Lemmon, and A. R. Lemmon. In press. Elevational speciation in action? Restricted gene flow associated with adaptive divergence across an altitudinal gradient. Journal of Evolutionary Biology doi: 10.1111/jeb.12760 Prum, R. O., J. S. Berv, A. Dornburg, D. J. Field, J. P. Townsend, E. Moriarty Lemmon, and A. R. Lemmon. 2015. A comprehensive phylogeny of birds (Aves) using targeted next generation DNA sequencing. Nature 526:569-573. Ruane, S., C. J. Raxworthy, A. R. Lemmon, E. Moriarty Lemmon, F. T. Burbrink. 2015. Comparing species-tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: An empirical study on Malagasy pseudoxyrhophiine snakes. BMC Evolutionary Biology 15:221. DOI 10.1186/s12862-015-0503-1 Barrow, L. N., A. Bigelow, C. Phillips, E. Moriarty Lemmon. 2015. Phylogeographic inference using Bayesian model comparison across a fragmented chorus frog species complex. Molecular Ecology 24:4739–4758. Eytan, R., B. Evans, A. Dornburg, A. Lemmon, E. Moriarty Lemmon, P. Wainwright, T. Near. 2015. Are 100 enough? Inferring Acanthomorph teleost phylogeny using Anchored Hybrid Enrichment. BMC Evolutionary Biology 15:113. doi 10.1186/s12862-015-0415-0 Warwick, A., J. Travis, E. Moriarty Lemmon. 2015. Geographic variation in the Pine Barrens treefrog (Hyla andersonii): concordance of genetic, morphometric, and acoustic signal data. Molecular Ecology 24:3281-3298. Brandley, M., S. Singal, J. Bragg, C. Jennings, A. R. Lemmon, E. Moriarty Lemmon, C. Moritz. 2015. Evaluating the phylogenetic informativeness of anchored enrichment loci at the tips of the tree of life: an empirical study using Eugongylus group scincid lizards. BMC Evolutionary Biology 15:62. doi: 10.1186/s12862-015-0318-0 Peloso, P., D. Frost, S. Richards, M. Rodrigues, M. Matsui, C. Raxworthy, S. Donnellan, S. Biju, E. Moriarty Lemmon, A. Lemmon, W. Wheeler. 2015. The impact of Anchored Phylogenomics and taxon sampling on phylogenetic inference in narromouthed frogs (Anura, Microhylidae). Cladistics 2015:1-28. Pyron, A. R., C. R. Hendry, V. M. Chou, E. Moriarty Lemmon, A. R. Lemmon, F. T. Burbrink. 2014. Effectiveness of Phylogenomic Data and Coalescent Species-Tree Methods for Resolving Difficult Nodes in the Phylogeny of Advanced Snakes (Serpentes: Caenophidia). Molecular Phylogenetics and Evolution 81:221-231. Warwick, A., J. Travis, E. Moriarty Lemmon. 2014. Development and characterization of 21 microsatellite loci for the Pine Barrens treefrog (Hyla andersonii). Conservation Genetic Resources doi:10.1007/s12686-014-0197-5. Barrow, L. N., C. A. Phillips, E. Moriarty Lemmon. 2014. Development and characterization of 24 microsatellite loci for the Illinois Chorus Frog (Pseudacris illinoensis) and Strecker's Chorus Frog (P. streckeri). Conservation Genetic Resources doi:10.1007/s12686-014-0158-z. Malone, J. H., J. Ribado, E. Moriarty Lemmon. 2014. Sensory drive does not explain reproductive character displacement of male acoustic signals in the Upland Chorus Frog (Pseudacris feriarum). Evolution 68:1306–1319. Barrow, L. N., H. F. Ralicki, S. A. Emme, E. Moriarty Lemmon. 2014. Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing. Molecular Phylogenetics and Evolution 75:78–90. Lemmon, E. Moriarty, and A. R. Lemmon. 2013. High-throughput genomic data in systematics and phylogenetics. Annual Review of Ecology, Evolution and Systematics 44:99–121. Lemmon, A. R., S. Emme, E. Moriarty Lemmon. 2012. Anchored hybrid enrichment for massively high-throughput phylogenomics. Systematic Biology 61:727–744. Lemmon, A. R., E. Moriarty Lemmon. 2012. High-throughput development of informative nuclear markers for shallow-scale phylogenetics and phylogeography. Systematic Biology 61:745–761.