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NMRbox: A Resource for Biomolecular NMR Computation. Maciejewski, Mark W; Schuyler, Adam D; Gryk, Michael R; Moraru, Ion I; Romero, Pedro R; Ulrich, Eldon L; Eghbalnia, Hamid R; Livny, Miron; Delaglio, Frank; Hoch, Jeffrey C Biophysical journal 2017 Apr;112(8):1529-1534
CONNJUR R: an annotation strategy for fostering reproducibility in bio-NMR-protein spectral assignment. Fenwick, Matthew; Hoch, Jeffrey C; Ulrich, Eldon; Gryk, Michael R Journal of biomolecular NMR 2015 Aug;63(2):141-50
CONNJUR Workflow Builder: a software integration environment for spectral reconstruction. Fenwick, Matthew; Weatherby, Gerard; Vyas, Jay; Sesanker, Colbert; Martyn, Timothy O; Ellis, Heidi J C; Gryk, Michael R Journal of biomolecular NMR 2015 Jul;62(3):313-26
A Pipeline Software Architecture for NMR Spectrum Data Translation. Ellis, Heidi J C; Weatherby, Gerard; Nowling, Ronald J; Vyas, Jay; Fenwick, Matthew; Gryk, Michael R Computing in science & engineering 2013 Jan;15(1):76-83
Parser Combinators: a Practical Application for Generating Parsers for NMR Data. Fenwick, Matthew; Weatherby, Gerard; Ellis, Heidi Jc; Gryk, Michael R Proceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations 2013 Jan;
Achieving high accuracy prediction of minimotifs. Mi, Tian; Rajasekaran, Sanguthevar; Merlin, Jerlin Camilus; Gryk, Michael; Schiller, Martin R PloS one 2012 Jan;7(9):e45589
An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities. Fenwick, Matthew; Sesanker, Colbert; Schiller, Martin R; Ellis, Heidi Jc; Hinman, M Lee; Vyas, Jay; Gryk, Michael R Proceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations 2012 Jan;201289-94
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. Mi, Tian; Merlin, Jerlin Camilus; Deverasetty, Sandeep; Gryk, Michael R; Bill, Travis J; Brooks, Andrew W; Lee, Logan Y; Rathnayake, Viraj; Ross, Christian A; Sargeant, David P; Strong, Christy L; Watts, Paula; Rajasekaran, Sanguthevar; Schiller, Martin R Nucleic acids research 2012 Jan;40(Database issue):D252-60
Secondary structure, a missing component of sequence-based minimotif definitions. Sargeant, David P; Gryk, Michael R; Maciejewski, Mark W; Thapar, Vishal; Kundeti, Vamsi; Rajasekaran, Sanguthevar; Romero, Pedro; Dunker, Keith; Li, Shun-Cheng; Kaneko, Tomonori; Schiller, Martin R PloS one 2012 Jan;7(12):e49957
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data. Nowling, Ronald J; Vyas, Jay; Weatherby, Gerard; Fenwick, Matthew W; Ellis, Heidi J C; Gryk, Michael R Journal of biomolecular NMR 2011 May;50(1):83-9
Iterative Development of an Application to Support Nuclear Magnetic Resonance Data Analysis of Proteins. Ellis, Heidi J C; Nowling, Ronald J; Vyas, Jay; Martyn, Timothy O; Gryk, Michael R Proceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations 2011 Apr;1014-1020
MimoSA: a system for minimotif annotation. Vyas, Jay; Nowling, Ronald J; Meusburger, Thomas; Sargeant, David; Kadaveru, Krishna; Gryk, Michael R; Kundeti, Vamsi; Rajasekaran, Sanguthevar; Schiller, Martin R BMC bioinformatics 2010 Jan;11328
VENN, a tool for titrating sequence conservation onto protein structures. Vyas, Jay; Gryk, Michael R; Schiller, Martin R Nucleic acids research 2009 Oct;37(18):e124
A proposed syntax for Minimotif Semantics, version 1. Vyas, Jay; Nowling, Ronald J; Maciejewski, Mark W; Rajasekaran, Sanguthevar; Gryk, Michael R; Schiller, Martin R BMC genomics 2009 Jan;10360
Minimotif miner 2nd release: a database and web system for motif search. Rajasekaran, Sanguthevar; Balla, Sudha; Gradie, Patrick; Gryk, Michael R; Kadaveru, Krishna; Kundeti, Vamsi; Maciejewski, Mark W; Mi, Tian; Rubino, Nicholas; Vyas, Jay; Schiller, Martin R Nucleic acids research 2009 Jan;37(Database issue):D185-90
Automatic maximum entropy spectral reconstruction in NMR. Mobli, Mehdi; Maciejewski, Mark W; Gryk, Michael R; Hoch, Jeffrey C Journal of biomolecular NMR 2007 Oct;39(2):133-9
Conceptual-level workflow modeling of scientific experiments using NMR as a case study. Verdi, Kacy K; Ellis, Heidi Jc; Gryk, Michael R BMC bioinformatics 2007 Jan;831
Minimotif Miner: a tool for investigating protein function. Balla, Sudha; Thapar, Vishal; Verma, Snigdha; Luong, Thaibinh; Faghri, Tanaz; Huang, Chun-Hsi; Rajasekaran, Sanguthevar; del Campo, Jacob J; Shinn, Jessica H; Mohler, William A; Maciejewski, Mark W; Gryk, Michael R; Piccirillo, Bryan; Schiller, Stanley R; Schiller, Martin R Nature methods 2006 Mar;3(3):175-7
High-performance exact algorithms for motif search. Rajasekaran, Sanguthevar; Balla, Sudha; Huang, Chun-Hsi; Thapar, Vishal; Gryk, Michael; Maciejewski, Mark; Schiller, Martin Journal of clinical monitoring and computing 2005 Oct;19(4-5):319-28
Identification of small molecule synthetic inhibitors of DNA polymerase beta by NMR chemical shift mapping. Hu, Hong-Yu; Horton, Julie K; Gryk, Michael R; Prasad, Rajendra; Naron, Jana M; Sun, Di-An; Hecht, Sidney M; Wilson, Samuel H; Mullen, Gregory P The Journal of biological chemistry 2004 Sep;279(38):39736-44
Delineation and analysis of the conceptual data model implied by the "IUPAC Recommendations for Biochemical Nomenclature". Fox-Erlich, Susan; Martyn, Timothy O; Ellis, Heidi J C; Gryk, Michael R Protein science : a publication of the Protein Society 2004 Sep;13(9):2559-63
Mapping of the interaction interface of DNA polymerase beta with XRCC1. Gryk, Michael R; Marintchev, Assen; Maciejewski, Mark W; Robertson, Anthony; Wilson, Samuel H; Mullen, Gregory P Structure (London, England : 1993) 2002 Dec;10(12):1709-20
Solution structure of a viral DNA repair polymerase. Maciejewski, M W; Shin, R; Pan, B; Marintchev, A; Denninger, A; Mullen, M A; Chen, K; Gryk, M R; Mullen, G P Nature structural biology 2001 Nov;8(11):936-41
Solution structure of the single-strand break repair protein XRCC1 N-terminal domain. Marintchev, A; Mullen, M A; Maciejewski, M W; Pan, B; Gryk, M R; Mullen, G P Nature structural biology 1999 Sep;6(9):884-93
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