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RASopathy Gene Mutations in Melanoma.
Halaban R, Krauthammer M. RASopathy Gene Mutations in Melanoma. J Invest Dermatol. 2016
Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas.
Krauthammer M, Kong Y, Bacchiocchi A, Evans P, Pornputtapong N, Wu C, McCusker JP, Ma S, Cheng E, Straub R, Serin M, Bosenberg M, Ariyan S, Narayan D, Sznol M, Kluger HM, Mane S, Schlessinger J, Lifton RP, Halaban R. Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas. Nat Genet. 2015 Sep;47(9):996-1002
Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.
Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R. Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma. Nat Genet. 2012 Sep;44(9):1006-14
A semantic web framework to integrate cancer omics data with biological knowledge.
Holford ME, McCusker JP, Cheung KH, Krauthammer M. A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S10
Yale Image Finder (YIF): a new search engine for retrieving biomedical images.
Xu S, McCusker J, Krauthammer M. Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinformatics. 2008 Sep 1;24(17):1968-70
Allam A, Schulz PJ, Krauthammer M: Toward automated assessment of health Web page quality using the DISCERN instrument. J Am Med Inform Assoc. 2017 May 1. PMID: 27707819
Lazova R, Pornputtapong N, Halaban R, Bosenberg M, Bai Y, Chai H, Krauthammer M: Spitz nevi and Spitzoid melanomas: exome sequencing and comparison with conventional melanocytic nevi and melanomas. Mod Pathol. 2017 May; 2017 Feb 10. PMID: 28186096
Mai MV, Krauthammer M: Controlling testing volume for respiratory viruses using machine learning and text mining. AMIA Annu Symp Proc. 2016; 2017 Feb 10. PMID: 28269950
Boddupalli CS, Bar N, Kadaveru K, Krauthammer M, Pornputtapong N, Mai Z, Ariyan S, Narayan D, Kluger H, Deng Y, Verma R, Das R, Bacchiocchi A, Halaban R, Sznol M, Dhodapkar MV, Dhodapkar KM: Interlesional diversity of T cell receptors in melanoma with immune checkpoints enriched in tissue-resident memory T cells. JCI Insight. 2016 Dec 22; 2016 Dec 22. PMID: 28018970
Ascierto PA, Agarwala S, Botti G, Cesano A, Ciliberto G, Davies MA, Demaria S, Dummer R, Eggermont AM, Ferrone S, Fu YX, Gajewski TF, Garbe C, Huber V, Khleif S, Krauthammer M, Lo RS, Masucci G, Palmieri G, Postow M, Puzanov I, Silk A, Spranger S, Stroncek DF, Tarhini A, Taube JM, Testori A, Wang E, Wargo JA, Yee C, Zarour H, Zitvogel L, Fox BA, Mozzillo N, Marincola FM, Thurin M: Future perspectives in melanoma research : Meeting report from the "Melanoma Bridge". Napoli, December 1st-4th 2015. J Transl Med. 2016 Nov 15; 2016 Nov 15. PMID: 27846884
Halaban R, Krauthammer M: RASopathy Gene Mutations in Melanoma. J Invest Dermatol. 2016 Sep; 2016 May 25. PMID: 27236105
Robles-Espinoza CD, Roberts ND, Chen S, Leacy FP, Alexandrov LB, Pornputtapong N, Halaban R, Krauthammer M, Cui R, Timothy Bishop D, Adams DJ: Germline MC1R status influences somatic mutation burden in melanoma. Nat Commun. 2016 Jul 12; 2016 Jul 12. PMID: 27403562
Merlino G, Herlyn M, Fisher DE, Bastian BC, Flaherty KT, Davies MA, Wargo JA, Curiel-Lewandrowski C, Weber MJ, Leachman SA, Soengas MS, McMahon M, Harbour JW, Swetter SM, Aplin AE, Atkins MB, Bosenberg MW, Dummer R, Gershenwald JE, Halpern AC, Herlyn D, Karakousis GC, Kirkwood JM, Krauthammer M, Lo RS, Long GV, McArthur G, Ribas A, Schuchter L, Sosman JA, Smalley KS, Steeg P, Thomas NE, Tsao H, Tueting T, Weeraratna A, Xu G, Lomax R, Martin A, Silverstein S, Turnham T, Ronai ZA: The state of melanoma: challenges and opportunities. Pigment Cell Melanoma Res. 2016 Jul; 2016 Apr 17. PMID: 27087480
Jiang Y, Shi X, Zhao Q, Krauthammer M, Rothberg BE, Ma S: Integrated analysis of multidimensional omics data on cutaneous melanoma prognosis. Genomics. 2016 Jun; 2016 Apr 30. PMID: 27141884
Wang X, Chen M, Yu X, Pornputtapong N, Chen H, Zhang NR, Powers RS, Krauthammer M: Global copy number profiling of cancer genomes. Bioinformatics. 2016 Mar 15; 2015 Nov 16. PMID: 26576652
Holford ME, Krauthammer M: Mutadelic: mutation analysis using description logic inferencing capabilities. Bioinformatics. 2015 Dec 1; 2015 Aug 12. PMID: 26272983
Li Q, Tsuneki M, Krauthammer M, Couture R, Schwartz M, Madri JA: Modulation of Sox10, HIF-1α, Survivin, and YAP by Minocycline in the Treatment of Neurodevelopmental Handicaps following Hypoxic Insult. Am J Pathol. 2015 Sep; 2015 Jul 22. PMID: 26209807
Krauthammer M, Kong Y, Bacchiocchi A, Evans P, Pornputtapong N, Wu C, McCusker JP, Ma S, Cheng E, Straub R, Serin M, Bosenberg M, Ariyan S, Narayan D, Sznol M, Kluger HM, Mane S, Schlessinger J, Lifton RP, Halaban R: Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas. Nat Genet. 2015 Sep; 2015 Jul 27. PMID: 26214590
Kong Y, Krauthammer M, Halaban R: Rare SF3B1 R625 mutations in cutaneous melanoma. Melanoma Res. 2014 Aug. PMID: 24709888
Choi J, Landrette SF, Wang T, Evans P, Bacchiocchi A, Bjornson R, Cheng E, Stiegler AL, Gathiaka S, Acevedo O, Boggon TJ, Krauthammer M, Halaban R, Xu T: Identification of PLX4032-resistance mechanisms and implications for novel RAF inhibitors. Pigment Cell Melanoma Res. 2014 Mar; 2014 Jan 6. PMID: 24283590