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Salah E. Abdel-Ghany*, Michael Hamilton*, Jennifer L. Jacobi, Peter Ngam, Nicholas Devitt, Faye Schilkey, Asa Ben-Hur, Anireddy S.N. Reddy (2016) A survey of the sorghum transcriptome using single-molecule long reads. (*joint first authors) Nature Communications 7:11706 | DOI: 10.1038/ncomms11706 K. V.S.K. Prasad*, Amira A.E. Abdel-Hameed*, Denghui Xing, and Anireddy S.N. Reddy (2016) Global gene expression analysis using RNA-seq uncovered a new role for SR1/CAMTA3 transcription factor in salt stress. Scientific Reports 6:27021: pages 1-15 (*joint first authors) D. Xing, Y.Wang, Michael Hamilton, Asa Ben-Hur and A.S.N. Reddy (2015) Transcriptome-wide identification of RNA targets of Arabidopsis serine/arginine protein 45 (SR45) uncovers the unexpected roles of this RNA binding protein in RNA processing. Plant Cell 27:3294-3308. Salah E. Abdel-Ghany, Maxim Golovkin, and A.S.N. Reddy (2015) Engineering of Plants for the Production of Commercially Important Products: Approaches and Accomplishments. In: Plant Biology and Biotechnolgy. Vol. II: Plant Genomics and Biotechnology, Springer Publisher. Saiprasad G. Palusa and A.S.N. Reddy (2015) Differential Recruitment of Splice Variants from SR Pre-mRNAs to Polysomes During Development and in Response to Stresses. Plant and Cell Physiology. 56: 421-427. Sergei A. Filichkin, Jason S. Cumbie, J., Palitha Dharmawadhana, Pankaj Jaiswal, Jeff H. Chang, Saiprasad G. Palusa, A.S.N. Reddy, Molly Megraw, Todd C. Mockler (2015) Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis. Mol. Plant 8:207-227. Shin, S., Golovkin, M. and Reddy. A.S.N (2014) A pollen-specific calmodulin-binding protein, NPG1, interacts with putative pectate lyases. Scientific Reports 4:5263. doi: 10.1038/srep05263. Palusa, S. G. and Reddy, A.S.N. (2013) Analysis of RNA-protein Interactions Using Electrophoretic Mobility Shift Assay (Gel Shift Assay). Bio-Protocols Nov. 20, 2013 Reddy, A.S.N., Marquez, Y., Kalyna, M. and Barta, A. (2013) Complexity of the alternative splicing landscape in plants. Plant Cell. 25: 3657-3683. Featured in “IN BRIEF” section of Plant Cell. Abdel-Ghany, S.E., Day, I., Heuberger, A.L., Broeckling, C.D. and Reddy, A.S.N.(2013) Metabolic engineering of Arabidopsis for butanetriol production using bacterial genes. Metabolic Engineering 20: 109-120. Lazzaro, M.D., Marom, E.Y., Reddy, A.S.N. (2013) Polarized cell growth, organelle motility, and cytoskeletal organization in conifer pollen tube tips are regulated by KCBP, the calmodulin binding kinesin. Planta 238:587-597. Helena Celesnik, Gul S. Ali, Faith M. Robison and Anireddy S.N. Reddy (2013) Arabidopsis thaliana VOZ (Vascular plant One-Zinc finger) transcription factors are required for proper regulation of flowering time. Biology Open 2: 421-431. Featured on cover page. K. Laluk, K.V.S.K. Prasad, T. Savchenko, H. Celesnik, K. Dehesh, M. Levy, T. Mitchell-Olds, A.S.N. Reddy (2012) The calmodulin-binding transcription factor SIGNAL RESPONSIVE1 is a novel regulator of glucosinolate metabolism and herbivory tolerance in Arabidopsis. Plant Cell Physiol. 53: 2008-2015 Julie Thomas, Saiprasad G. Palusa, K.V.S.K. Prasad, Gul Shad Ali, Giridara-Kumar Surabhi, Asa Ben-Hur, Salah E. Abdel-Ghany and Anireddy S. N. Reddy (2012) Identification of an intronic splicing regulatory element involved in autoregulation of alternative splicing of the SCL33 pre-mRNA. Plant Journal 72: 935-946. Irene S. Day, Maxim Golovkin, Saiprasad Goud Palusa, Alicia Link, Gul Shad Ali, Julie Thomas, Dale N. Richardson, and Anireddy S.N. Reddy(2012) Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: Insights into regulated splicing. Plant Journal 71, 936–947. M.F. Rogers, J. Thomas, A.S.N. Reddy, and A. Ben-Hur (2012). SpliceGrapher: Detecting patterns of alternativesplicing from RNA-seq data in the context of gene models and EST data. Genome Biology, 13, R4. Designated as "Highly Accessed" article Cheung, A and Reddy, A.S.N. (2012) Nuclear Architecture and Dynamics: Territories, Nuclear Bodies and Nucleocytoplasmic Trafficking. Plant Physiol. 158: 23-25. Reddy, A.S.N., Rogers, M., Richardson, D., Hamilton, M. and Ben-Hur, A. (2012) Deciphering the plant splicing code: Experimental and computational approaches for predicting alternative splicing and splicing regulatory elements. Front. Plant Sci. 3:18. doi: 10.3389/fpls.2012.00018 Reddy, A.S.N., Day, I.S, Janett G?hring, Andrea Barta (2012) Localization and dynamics of plant splicing regulators. Plant Physiol. 158: 67-77. Reddy, A.S.N., Ali, G.S., Celesnik, H. and Day, I.S. (2011) Coping with stresses: Roles of calcium- and calcium/calmodulin-regulated gene expression. Plant Cell 23: 2010-2032 Dale N. Richardson, Mark F. Rogers, Adam Labadorf, Asa Ben-Hur, Hui Guo, Andrew H. Patersonand Anireddy S.N. Reddy (2011) Comparative Analysis of Serine/Arginine-Rich Proteins Across 27 Eukaryotes: Insights into Sub-family Classification and Extent of Alternative Splicing. PLoS ONE 6:e24542, Pages 1-16. M. Hamilton, A.S.N. Reddy, and A. Ben-Hur. Kernel methods for Calmodulin binding and binding site prediction (2011) In: Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine Pages 381-386, ACM New York, NY, USA Reddy, A.S.N., Ben-Hur, A. and Day, I.S. (2011) Experimental and computational approaches for the study of calmodulin interactions. Phytochemistry, 72:1007-1019 Reddy, A.S.N., and Ali, G.S (2011) Plant SR proteins: Roles in pre-mRNA splicing, plant development and stress responses. Advanced Review, Wiley Interdisciplinary Reviews (WIREs) RNA. In press Reddy, A.S.N. and Day, I (2011) Microtubule motor proteins in the eukaryotic green lineage: Functions and regulation. In The Plant Cytoskeleton, Advances in Plant Biology 2, Springer. Pages 119-141.