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Lu, J., Y. Fu, S. Kumar, Y. Shen, R. W. Carthew and C.-I Wu, 2008 Adaptive evolution of newly-ermged microRNA genes in Drosophila. Molec. Biol. Evol. 25: 929–938.
Lu, J., Y. Shen, Q. Wu, S. Kumar, B. He, S. Shi, R. W. Carthew, S. Wang and C.-I Wu, 2008 The birth and death of microRNA genes in Drosophila. Nature Genetics 40: 351–355.
Wang, H., Y. Fu, M. McPeek, X. Lu, S. Nuzhdin, A. Xu, M. Wu and C.-I Wu, 2008 Complex genetic interactions underlying expression differences between Drosophila races - Analysis of chromosome substitutions. Proc. Natl. Acad. Sci. 105: 6362–6367.
Wu, C.-I, H. Wang, S. Ling and X. Lu, 2016 The Ecology and Evolution of Cancer–The ultra-microevolutionary process. Annu. Rev. Genet. 50: 15.1–15.23.
Yu, L., G. D. Wang, J. Ruan, Y. B. Chen, C. P. Yang, X. Cao, H. Wu, Y. H. Liu, Z. L. Du, X. P. Wang, J. Yang, S. C. Cheng, L. Zhong, L. Wang, X. Wang, J. Y. Hu, L. Fang, B. Bai, K. L. Wang, N. Yuan, S. F. Wu, B. G. Li, J. G. Zhang, Y. Q. Yang, C. L. Zhang, Y. C. Long, H. S. Li, J. Y. Yang, D. M. Irwin, O. A. Ryder, Y. Li, C.-I Wu and Y. P. Zhang, 2016 Genomics analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation. Nat. Genet. 48(8): 947–952.
Wang, K. L., S. J. Lai, X. X. Yang, T. Q. Zhu, X. M. Lu, C.-I Wu and J. Ruan, 2017 Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq. Nature Communications. 8: 15335. | DOI: 10.1038/ncomms15335
Chen, Y. X., D. Tong and C.-I Wu, 2017 A new formulation of random genetic drift and its application to the evolution of cell populations. Mol. Biol. Evol. 34(8). | doi:10.1093/molbev/msx161
Li, C. Y., Y. L. Hou, J. Xu, A. Q. Zhang, Z. Z. Liu, F. R. Qi, Z. Y. Yang, K. Chen, S. X. Liu, H. W. Huang, Q. F. Wang, J. H. Dong, C.-I Wu and X. M. Lu, 2017 A direct test of selection in cell populations using the diversity in gene expression within tumors. Mol. Biol. Evol. 34(7): 1730–1742.
Chen, Y. X., H. J. Wen and C.-I Wu, 2017 A mathematical theory of the Transcription Repression (TR) therapy of cancer – Whether and how it may work. Oncotarget 8(24): 38642–38649. | doi: 10.18632/oncotarget.16957
Yang, M., Z. W. He, S. H. Shi and C.-I Wu, 2017 Can genomic data alone tell us whether speciation happened with gene flow? Molecular Ecology 6: 2845–2849.
Yang, M., Z. W. He, Y. L. Huang, L. Lu, Y. B. Yan, L. Hong, H. Shen, Y. Liu, Q. Guo, L. Jiang, Y. W. Zhang, A. J. Greenberg, R. C. Zhou, X. J. Ge, C.-I Wu and S. H. Shi, 2017 The emergence of the hyper-invasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population Transcriptomics. Molecular Ecology 26: 3405–3423. | DOI: 10.1111/mec.14124
Xu, S. H., Z. W. He, Z. X. Guo, Z. Zhang, G. J. Wyckoff, A. Greenberg, C.-I Wu and S. H. Shi, 2017 Genome-Wide Convergence during Evolution of Mangroves from Woody Plants. Mol. Biol. Evol. 34(4): 1008–1015.
Xu, S. H., Z. W. He, Z. Zhang, Z. X. Guo, W. X. Guo, H. M. Lyu, J. F. Li, M. Yang, Z. L. Du, Y. L. Huang, R. C. Zhou, C. R. Zhong, D. E. Boufford, M. Lerdau, C.-I Wu, N. C. Duke and S. H. Shi, 2017 The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole genome sequencing. National Science Review 4: 721–734.
Liufu, Z. Q., Y. X. Zhao, L. Guo, G. X. Miao, J. Xiao, Y. Lyu, Y. X. Chen, S. H. Shi, T. Tang and C.-I Wu, 2017 Redundant and incoherent regulations of multiple phenotypes suggest microRNAs' role in stability control. Genome Res. 27(10): 1665–1673.
Zhao, Y. X., X. Shen, T. Tang and C.-I Wu, 2017 Weak Regulation of Many Targets Is Cumulatively Powerful—An Evolutionary Perspective on microRNA Functionality. Mol. Biol. Evol. 34(12): 3041.
Xu, J., X. X. Peng, Y. X. Chen, Y. Z. Zhang, Q. Ma, L. Liang, A. C. Carter, X. M. Lu and C.-I Wu, 2017 Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity. Elife 6: e28070. | doi: 10.7554/eLife.28070.
Wang, H. Y., Y. X. Chen, D. Tong, S. P. Ling, Z. Hu, Y. Tao, X. M. Lu and C.-I Wu, 2018 Is the evolution in tumors Darwinian or non-Darwinian? National Science Review 5(1): 15–17.
Zhao, Y. X., P. Lin, Z. Q. Liufu, H. Yang, Y. Lyu, X. Shen, C.-I Wu and T. Tang, 2018 Regulation of Large Number of Weak Targets-New Insights from Twin-microRNAs. Genome Biol. Evol. 10(5): 1255–1264.
Lu, G. G., Y. X. Zhao, Z. Q. Liufu and C.-I Wu, 2018 On the possibility of death of new genes – evidence from the deletion of de novo microRNAs. BMC Genomics 19(1): 388.
Lu, G. G., Y. X. Zhao, H. Yang, A. Lan, S. H. Shi, Z. Q. Liufu, Y. Huang, T. Tang, J. Xu, X. Shen and C.-I Wu, 2018 Death of new microRNA genes in Drosophila via gradual loss of fitness advantages. Genome Res. 28(9): 1309–1318.
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