Schlick, Tamar - New York University - Department of Chemistry

个人简介

B.S., Wayne State Univeristy; Ph.D., New York University Courant Institute of Mathematical Sciences; Postdoctoral research, NYU and Weizmann Institute, Israel

研究领域

Molecular mechanics and dynamics, computational and structural biology, DNA supercoiling, RNA structure and genomics, and DNA/protein interactions. Biomolecular Modeling, Computational Biology Courses

近期论文

查看导师新发文章（温馨提示：请注意重名现象，建议点开原文通过作者单位确认）

Namhee Kim, Mai Zahran, and Tamar Schlick, "Computational Prediction of Riboswitch Tertiary Structures Including Pseudoknots by RAGTOP: A Hierarchical Graph Sampling Approach", Methods Enzymol., 553, 115-35, DOI: 10.1016/bs.mie.2014.10.054 (2015). Gungor Ozer, Rosana Collepardo-Guevara, and Tamar Schlick, "Forced unraveling of chromatin fibers with nonuniform linker DNA lengths", J. Phys.: Condens. Matter, 27(6): 064113, DOI: 10.1088/0953-8984/27/6/064113 (2015). Bret D. Freudenthal, William A. Beard, Lalith Perera, David D. Shock, Taejin Kim, Tamar Schlick, and Samuel H. Wilson, "Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide", Nature,517, 635–639, DOI:10.1038/nature13886 (2014). Namhee Kim, Zhe Zheng, Shereef Elmetwaly and Tamar Schlick, "RNA Graph Partitioning for the Discovery of RNA Modularity: A Novel Application of Graph Partition Algorithm to Biology", PLoS ONE, 9(9): e106074, DOI: 10.1371/journal.pone.0106074 (2014). Antoni Luque, Rosana Collepardo-Guevara, Sergei Grigoryev and Tamar Schlick, "Dynamic condensation of linker histone C-terminal domain regulates chromatin structure", Nucleic Acids Res., 42(12): 7553-7560, DOI: 10.1093/nar/gku491 (2014). Rosana Collepardo-Guevara, and Tamar Schlick, "Chromatin fiber polymorphism triggered by variations of DNA linker lengths", PNAS, DOI: 10.1073/pnas.1315872111 (2014). Namhee Kim, Christian Laing, Shereef Elmetwaly, Segun Jung, Jeremy Curuksu, and Tamar Schlick, "Graph-based sampling for approximating global helical topologies of RNA", PNAS, DOI: 10.1073/pnas.1318893111 (2014). Yunlang Li, Bret D. Freudenthal, William A. Beard, Samuel H. Wilson, and Tamar Schlick, "Optimal and Variant Metal-Ion Routes in DNA Polymerase β's Conformational Pathways", J. Am. Chem. Soc.,DOI: 10.1021/ja412701f (2014). Segun Jung and Tamar Schlick, "Interconversion between Parallel and Antiparallel Conformations of a 4H RNA junction in Domain 3 of Foot-and-Mouth Disease Virus IRES Captured by Dynamics Simulations", Biophys. J., 106(2): 447-458, (2014). Benedetta Sampoli Benítez, Zachary R. Barbati, Karunesh Arora, Jasmina Bogdanovic, and Tamar Schlick, "How DNA Polymerase X Preferentially Accommodates Incoming dATP Opposite 8-Oxoguanine on the Template", Biophys. J., 105(11): 2559-2568, (2013). Tamar Schlick, "The 2013 Nobel Prize in Chemistry Celebrates Computations in Chemistry and Biology", SIAM News, 46(10), December (2013). Christian Laing, Segun Jung, Namhee Kim, Shereef Elmetwaly, Mai Zahran, and Tamar Schlick, "Predicting Helical Topologies in RNA Junctions as Tree Graphs", PLoS ONE, 8(8): e71947, DOI:10.1371/journal.pone.0071947 (2013). Yunlang Li, and Tamar Schlick, "Gate-keeper Residues and Active-Site Rearrangements in DNA Polymerase μ Help Discriminate Non-cognate Nucleotides", PLoS Comput. Biol., 9(5), DOI:10.1371/journal.pcbi.1003074 (2013). Rosana Collepardo-Guevara, and Tamar Schlick, "Insights into chromatin fibre structure by in vitro and in silico single-molecule stretching experiments", Biochem. Soc. Trans., 41(2): 494-500 (2013). Segun Jung, and Tamar Schlick, "Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site", Nucleic Acids Res., 41(3): 1483-95 (2013). Namhee Kim, Louis Petingi, and Tamar Schlick, "Network Theory Tools for RNA Modeling", WSEAS Transactions on Math, 12(9): 941-955 (2013). Namhee Kim, Niccole Fuhr and Tamar Schlick, "Graph Applications to RNA Structure and Function", Chapter 3, pp. 23–51, In Biophysics of RNA Folding, Ed. R. Russel, Biophysics for the Life Sciences 3, Springer Verlag (2013). Rosana Collepardo-Guevara, and Tamar Schlick, "Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes", Nucleic Acids Res., 40(18): 8803-8817 (2012). Tamar Schlick, Karunesh Arora, William A. Beard, and Samuel H. Wilson, "Perspective: pre-chemistry conformational changes in DNA polymerase mechanisms", Theor Chem Acc, 131(12): 1287 (2012). Namhee Kim and Tamar Schlick, "A New Toolkit for Modeling RNA from a Pseudo-Torsional Space", J. Mol. Biol., doi:10.1016/j.jmb.2012.05.027 (2012).