Sinha, Neelima R. - University of California, Davis

研究领域

Evolution of developmental morphology and plant responses to stress Genetic and molecular analysis of compound leaf development in tomato. Evolution of land plant form. Plasticity in cells and organs at the genomic level in response to developmental cues and environmental stresses. Deciphering the host-plant parasite interaction between tomato and Cuscuta using genomics.

近期论文

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A Ranjan, BT Townsley, Y Ichihashi, NR Sinha, DH Chitwood. An Intracellular Transcriptomic Atlas of the Giant Coenocyte Caulerpa taxifolia PLoS genetics 11 (1), e1004900 DOI: 10.1371/journal.pgen.1004900 Brad T. Townsley, Michael F. Covington, Yasunori Ichihashi†, Kristina Zumstein and Neelima R. Sinha* (2015) BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction Front. Plant Sci., 22 May 2015 | http://dx.doi.org/10.3389/fpls.2015.00366 Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JNM, Aradhya M, Prins B, Li L, Myles S, Sinha NR. (2014) A Modern Ampelography: A Genetic Basis for Leaf Shape and Venation Patterning in Grape Plant physiology 164 (1), 259-272 Ichihashi Y, Aguilar-Martínez J, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JNM, and Sinha NR. (2014) Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape PNAS 111 (25) E2616-E2621 Ranjan A, Ichihashi Y, Farhi M, Zumstein K, Townsley B, David-Schwartz R, Sinha NR. (2014) De novo assembly and characterization of the transcriptome of the parasitic weed Cuscuta pentagona identifies genes associated with plant parasitism. Plant Physiol. http://www.plantphysiol.org/content/early/2014/01/07/pp.113.234864.long Koenig, D, Jiménez-Gómez, JM, Kimura, S, Fulop, D, Chitwood, DH, Headland, LR, Kumar, R, Covington, MF, Devisetty, UK, Tat, AV, Tohge, T, Bolger, A, Schneeberger, K, Ossowski, S, Lanz, C, Xiong, G, Taylor-Teeples, M, Brady, SM, Pauly, M, Weigel, D, Usadel, B, Fernie, AR, Peng, J, Sinha, NR, Maloof, JN (2013) Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci USA. 110: E2655-62. Chitwood, DH, Kumar, R, Headland, LR, Ranjan, A, Covington, MF, Ichihashi, Y, Fulop, D, Jimenez-Gomez, JM, Peng, J, Maloof, JN, Sinha, NR (2013) A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. Plant Cell 25: 2465-2481 Chitwood, D., Headland, L., Ranjan, A., Braybrook, S., Koenig, D., Martinez, C., Kuhlemeier, C., Smith, R., and Sinha, N. (2012) – Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning. Plant Cell. 24:2318-2327. Alakonya, A, Kumar, R, Koenig, D, Kimura, S, Townsley, B, Runo, S, Garces, HM, Kang, J, Yanez, A, David-Schwartz, R, Machuka, J, Sinha, N (2012) Interspecific RNA Interference of SHOOT MERISTEMLESS-Like Disrupts Cuscuta pentagona Plant Parasitism. The Plant cell, 24(7): 3153-66. Koenig, D., Bayer, E., Kang, J., Kuhlemeier, C., and Neelima Sinha (2009). Auxin patterns Solanum lycopersicum leaf morphogenesis. Development 136:2997-06 Kimura, S., Koenig, D., Kang, J., Yoong, F-Y., Sinha, N. (2008) Natural variation in leaf morphology results from mutation of a novel knox gene. Current Biology 18:672-677