Maloof, Julin - University of California, Davis - College of Biological Sciences

研究领域

How plants sense and respond to their neighbors Light is essential for plant growth. Perhaps as a consequence, plants have an intricate set of photoreceptors and responses that they use to optimize their development and physiology to suit their light environment. We study the ways in which plants have evolved differences in their light perception and responses that allow them to thrive in different environments. We are interested in both the genetic and molecular basis of variation in light response as well as the adaptive consequences. A combination of molecular and quantitative genetics is used in Arabidopsis, Tomato, and Brassica

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Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM. (2016) Domestication selected for deceleration of the circadian clock in cultivated tomato. Nature genetics 48(1):89-93. Brock MT, Lucas LK, Anderson NA, Rubin MJ, Markelz RJ, Covington MF, Devisetty UK, Chapple C, Maloof JN, Weinig C. (2016) Genetic architecture, biochemical underpinnings and ecological impact of floral UV patterning. Molecular ecology 25(5):1122-40. Carriedo LG, Maloof JN, Brady SM. (2016) Molecular control of crop shade avoidance. Current opinion in plant biology 30():151-8. Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR. (2016) eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato. Plant physiology 172(1):328-40. Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR. (2016) A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification. G3 (Bethesda, Md.) . Nguyen TT, Slaughter DC, Max N, Maloof JN, Sinha N. Structured Light-Based 3D Reconstruction System for Plants. Sensors. 2015 Jul 29;15(8):18587–612. Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR. (2015) Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology. Plant physiology 169(3):2030-47. Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ. Reassess the t Test: Interact with All Your Data via ANOVA. Plant Cell. 2015 Jul 28;tpc.15.00238. Baker RL, Leong WF, Brock MT, Markelz RJC, Covington MF, Devisetty UK, Edwards CE, Maloof J, Welch S, Weinig C. Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape. New Phytologist. 2015 Oct;208(1):257–68. Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN. Shade Avoidance Components and Pathways in Adult Plants Revealed by Phenotypic Profiling. PLoS Genet. 2015 Apr 15;11(4):e1004953. Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ (2014). New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiol. 165(1):175–85. PMCID: PMC4012578 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Gómez JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RCHJ, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JKC, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR. (2014) The genome of the stress-tolerant wild tomato species Solanum pennellii. Nat Genet. 46(9):1034–8. Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN (2014). Polymorphism Identification and Improved Genome Annotation of Brassica rapa through Deep RNA Sequencing. G3 (Bethesda). Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR (2014). Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape. Proceedings of the National Academy of Sciences. 111(25):E2616–21. PMCID: PMC4078850 Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR (2014). Resolving Distinct Genetic Regulators of Tomato Leaf Shape within a Heteroblastic and Ontogenetic Context. THE PLANT CELL. Ron M, Dorrity MW, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Klibenstein DJ, Brady SM (2013). Identification of Novel Loci Regulating Inter-specific Variation in Root Morphology and Cellular Development in Tomato. Plant Physiol. PMCID: PMC3668068 Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, Prins B, Li L, Myles S, Sinha NR (2014). A modern ampelography: a genetic basis for leaf shape and venation patterning in grape. Plant Physiol. 164(1):259–72. PMCID: PMC3875807 Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, Xiong G, Taylor-Teeples M, Brady SM, Pauly M, Weigel D, Usadel B, Fernie AR, Peng J, Sinha NR, Maloof JN (2013). Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences 110(28):E2655–62. PMCID: PMC3710864 Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR (2013). A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. THE PLANT CELL (7):2465–81. PMCID: PMC3753377 Chitwood DH, Maloof JN, Sinha NR (2013). Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures. Plant Physiol. PMCID: PMC3668051 Maloof JN, Nozue K, Mumbach MR, Palmer CM (2013). LeafJ: An ImageJ Plugin for Semi-automated Leaf Shape Measurement. JoVE. 2013;(71). Palmer CM, Bush SM, Maloof JN. Phenotypic and Developmental Plasticity in Plants. eLS. John Wiley & Sons. Ltd: Chichester; 2012. p. 1–9. Sharlach M, Dahlbeck D, Liu L, Chiu J, Jiménez-Gómez JM, Kimura S, Koenig D, Maloof JN, Sinha N, Minsavage GV, Jones JB, Stall RE, Staskawicz BJ (2012). Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716. Theor Appl Genet. Seymour, D. K., Filiault, D. L., Henry, I. M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., et al. (2012). Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proceedings of the National Academy of Sciences of the United States of America, 109(11), 4227–4232. doi:10.1073/pnas.1117277109 Filiault, D. L., & Maloof, J. N. (2012). A Genome-Wide Association Study Identifies Variants Underlying the Arabidopsis thaliana Shade Avoidance Response. PLoS Genetics, 8(3), e1002589. doi:10.1371/journal.pgen.1002589