近期论文

查看导师新发文章 （温馨提示：请注意重名现象，建议点开原文通过作者单位确认）

Arsuaga, J., Roca, J. and Sumners, D. W. Topology of viral DNA. (Book chapter) in "Emerging Topics in Physical Virology" Imperial College Press. (2010) Ed. P. G. Stockley and R. Twarock. Arsuaga J, Diao Y and Vazquez M Mathematical methods in DNA topology: Applications to chromosome organization and site-specific recombination. IMA volumes in Mathematics and Its Applications. Volume 150: Mathematics of DNA Structure, Function, and Interactions (2009) Edited by Craig John Benham, Stephen Harvey, Wilma K. Olson, De Witt L. Sumners, and David Swigon. Springer Science + Business Media, LLC, New York. (Book chapter) Arsuaga J, and Diao Y (2008) DNA knotting in Spooling like conformations in Bacteriophages. Journal Computational and Mathematical Methods in Medicine 9 (3-4) 303-316. Arsuaga, J., Vazquez, M., McGuirk, P., Sumners D.W. and Roca J. (2005) DNA knots reveal a chiral organization of DNA in phage capsids. Proceedings of the National Academy of Sciences USA. 102(26):9165-9 Arsuaga, J., Tan, R., Vazquez, M., Sumners, D. W., and Harvey, S. C. (2002) Investigation of Viral DNA Packaging Using Molecular Mechanics Models. Biophysical Chemistry, 101-102(1): 475-484. Arsuaga J, Vazquez, M., Trigueros, S., Sumners, D. W., and Roca, J. (2002) Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Proceedings of the National Academy of Sciences USA 2002, 99(8):5373-5377 Trigueros, S., Arsuaga, J., Vazquez, M., Sumners, D.W., Roca, J. (2001) Novel display of knotted DNA molecules by two dimensional gel electrophoresis. Nucleic Acids Research, 29 (13): e67. Postow, L., Hardy, C., Arsuaga, J. and Cozzarelli, N. R. (2004) Topological domain structure of the Escherichia coli chromosome. Genes and Development. 18(14):1766-79. Peter, B., Arsuaga, J., Breier, A., Khodursky, A., Brown, P., and Cozzarelli N. R. (2004) Genomic analysis of supercoiling sensitive genes in Escherichia coli: responses to topoisomerase inhibition. Genome Biology 5 (11) R-87. Diao Y., Hinson K., Sun Y. and Arsuaga J. (2015) The effect of volume exclusion on the formation of DNA minicircle networks. J. Phys. A Math Theor. 48 (43) 435202 Diao Y., Rodriguez V., Klingbeil M and Arsuaga J. Orientation of DNA minicircles balances density and topological complexity in kinetoplast DNA. Plos One 10(6): e0130998. Arsuaga J., Diao Y, Klingbeil M. and Rodriguez V. (2014) Properties of Topological Networks of Flexible Polygonal Chains. Mol. Based. Math. Bio. 2: 98-106. Rodriguez V, Diao Y. and Arsuaga J. (2013) Percolation phenomena in randomized topological networks. J. Phys.: Conf. Ser. 454 012070 Arsuaga J, Diao Y and Hinson K (2012) The effect of angle restriction on the topological characteristics of minicircle networks. J. Stat. Phys. 146: 434-445. Arsuaga J, Diao Y and Hinson K, (2012) The growth of minicircle networks on regular lattices, J. of Phys. A: Math. Theor. 45 035004 Diao Y, Hinson K, Kaplan R, Vazquez M, and Arsuaga J (2012) The effects of minicircle density on the topological structure of the mitochondrial DNA from trypanosomes. Journal of Mathematical Biology 64(6) 1087-1108 Arsuaga, J., Blackstone, T., Diao,Y., Karadayi, E. , Saito, Y. (2007) Linking of Uniform Random Polygons in Confined Spaces. J. Phys. A: Math. Gen. 40: 1925-1936 Segal M, Xiong H, Capurso D, Vazquez M and Arsuaga J (2014) Reproducibility of three-dimensional chromatin configuration reconstructions. Biostatistics 15(3): 442-56. Arsuaga J., Heskia I., Hosten S., and Maskalevich T. (2015) Uncovering Proximity of Chromosome Territories using Classical Algebraic Statistics. Journal of Algebraic Statistics. 6 (2):133-149. Arsuaga J., Jayasinghe R., Scharein R, Segal M and Vazquez M. (2015) Current analytical methods are insufficient to determine the topological complexity of the human genome. Frontiers in Molecular Biosciences, section Mathematics of Biomolecules 2(48). Blackstone, T, Scharein, R., Varela, R., Diao, Y., and Arsuaga J. (2011) Modeling Chromosome Intermingling Using Overlapping Uniform Random Polygons. Journal of Mathematical Biology 62(3): 371-89. Vives, S., Bradford, L., Vazquez, M., Brenner, D., Sachs, R. K., Hlatky, L., Cornforth, M. and Arsuaga, J. (2005) SCHIP: Statistics of Chromosome Interphase Positioning based on interchange data. Bioinformatics 21(14):3181-2. Arsuaga, J., Greulich-Bode, K., Vazquez, M., Brukner, M.,Hahnfeldt,P., Brenner, D.J., Sachs, R. and Hlatky, L. (2004) Chromosome positioning through radiogenic aberrations. International Journal of Radiation Biology 80 (7), 507-516. Cornforth, M. N., Greulich-Bode, K. M., Loucas, B. D., Arsuaga, J., Vazquez, M., Daye,J., Sachs, R. K.,Bruckner, M., Molls, M., Hahnfeldt, P., Hlatky, L., Brenner, D. J. (2002) Chromosomes are predominantly located randomly with respect to each other in interphase human cells. The Journal of Cell Biology 159 (2), 237-244. Levy, D., Vazquez, M., Loucas, B. D., Cornforth, M. N., Sachs, R. K., Arsuaga, J. (2004) Comparing DNA damage-processing pathways by computer analysis of chromosome painting data. Journal of Computational Biology 11(4): 626-641.