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S. A. Bagherzadeh, S. Alavi, J. A. Ripmeester, and P. Englezos (2015). Formation of Methane Nano-bubbles during Hydrate Decomposition and Their Effect on Hydrate Growth. Journal of Chemical Physics, 142, 214701. S. A. Bagherzadeh, S. Alavi, J. A. Ripmeester, P. Englezos (2015). Why Ice-binding Type I Antifreeze Protein Acts as a Gas Hydrate Inhibitor. Physical Chemistry Chemical Physics, 17, 9984-9990. H. Dureckova, T. K. Woo, S. Alavi, J. A. Ripmeester (2015). Molecular dynamics simulation of halogen bonding in Cl2, BrCl, and mixed Cl2/Br2 clathrate hydrates. Canadian Journal of Chemistry 93, 864-873. S. Alavi, K. Shin, J. A. Ripmeester (2014). Molecular dynamics simulations of hydrogen bonding in clathrate hydrates with ammonia and methanol guest molecules. Journal of Chemical and Engineering Data, 60, 389-397. G. McLaurin, K. Shin, S. Alavi, J. A. Ripmeester (2014). Antifreezes as catalysts of hydrate formation from ice. Angewandte Chemie International Edition 53, 10429-10433. K. Shin, I. L. Moudrakovski, M. D. Davari, S. Alavi, C. I. Ratcliffe, J. A. Ripmeester (2014). Crystal engineering the clathrate hydrate lattice with NH4F. CrystEngComm 16, 7209-7217.. H. Mohammadimanesh, S. Tashakor, S. Alavi (2013). Diffusion of benzene through the beta zeolite phase. Microporous Mesoporous Materials 181, 29-37. K. Shin, K. A. Udachin, I. L. Moudrakovski, D. M. Leek, S. Alavi, C. I. Ratcliffe, J. A. Ripmeester (2013). Methanol incorporation in clathrate hydrates: Implications for flow assurance and icy planetesimals. Proceedings of the National Academy of Sciences (USA) 110, 8437. F. Takeuchi, M. Hiratsuka, R. Ohmura, S. Alavi, A. K. Sum, and K. Yasuoka (2013). Water proton configurations in structure I and II clathrate hydrates. Journal of Chemical Physics 138, 124504. H. Mosaddeghi, S. Alavi, M. H. Kowsari, B. Najafi (2012). Simulations of nanoconfined water between parallel graphite plates. Journal of Chemical Physics 137, 184703. K. Shin, R. Kumar, K. A. Udachin, S. Alavi, J. A. Ripmeester (2012). Ammonia clathrate hydrates – new solid phases for Titan, Enceladus, and other planetary systems. Proceedings of the National Academy of Sciences (USA) 109, 14785-14790. S. Alavi, J. A. Ripmeester (2012). Effect of small cage guests on hydrogen bonding of THF in binary structure II clathrate hydrates. Journal of Chemical Physics 137, 054712. M. Nohra, T. K. Woo, S. Alavi, J. A. Ripmeester (2012). Invited contribution: Molecular dynamics Gibbs energy calculations for CO2 capture and storage in structure I clathrate hydrates in the presence of SO2, CH4, N2, and H2S impurities, Journal of Chemical Thermodynamics 44, 5-12. A. Maleki, S. Alavi, B. Najafi (2011). Molecular dynamics simulation study of adsorption and patterning of DNA bases on the Au(111) surface. Journal of Physical Chemistry C 115, 22484-22494. S. Alavi, R. Ohmura, J. A. Ripmeester (2011). Ethanol–water hydrogen bonding in the structure I binary clathrate hydrate. Journal of Chemical Physics 134, 054702. H. Mohammadimanesh, S. Alavi, T. K. Woo, B. Najafi (2011). Molecular dynamics simulation of 13C NMR lineshapes of linear molecules in structure I clathrate hydrate. Physical Chemistry Chemical Physics 13, 2367-2377. R. Vaidhyanathan, S. S. Iremonger, G. K. H. Shimizu, P. Boyd, S. Alavi, T. K. Woo (2010). Direct observation and quantification of CO2 binding within amine-functionalized nanoporous solids. Science 330, 650. S. Alavi, S. Takeya, R. Ohmura, T. K. Woo, and J. A. Ripmeester (2010). Guest-host hydrogen bonding and semiclathrate formation in binary ethanol, 1-propanol, and 2- propanol + methane structure II clathrate hydrates. Journal of Chemical Physics 133, 074505. S. Alavi, J. A. Ripmeester (2010). Non-equilibrium adiabatic molecular dynamics simulations of methane hydrate decomposition. Journal of Chemical Physics, 132, 144703. A. Sirjoosingh, S. Alavi, T. K. Woo (2010). Simulations of carbon dioxide and carbon monoxide adsorption in zeolitic imidazolate frameworks. Journal of Physical Chemistry C 114, 2171-2178.