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Germain, H., Joly, D.L., Mireault, C., Plourde, M.B., Letanneur, C., Stewart, D., Morency, M.-J., Petre, B., Duplessis, S., et A. Séguin. (2017). Infection assays in Arabidopsis reveal candidate effectors from the poplar leaf rust fungus that promote susceptibility to bacteria and oomycete pathogens. Molecular Plant Pathology, (doi:10.1111/mpp.12514). Cuomo, C.A., Bakkeren, G., Badr Khalil, H., Panwar, V., Joly, D.L., Linning, R., Sakthikumar, S., Song, X., Adiconis, X., Fan, L., Goldberg, J.M., Levin, J.Z., Young, S., Zeng, Q., Anikster, Y., Bruce, M., Wang, M., Yin, C., McCallum, B., Szabo, L.J., Hulbert, S., Chen, X., et J.P. Fellers. (2017). Comparative analysis highlights variable genome content of wheat rusts and divergence of the mating loci. bioRxiv, 060665 (doi:10.1101/060665). Genes Genomes Genetics, (doi :10.1534/g3.032797). Morrison, C.K., Novinscak, A., Gadkar, V.J., Joly, D.L., et M. Filion. (2017). Complete genome sequence of Pseudomonas fluorescens LBUM636, a strain with biocontrol capabilities against late blight of potato. Genome Announcements, 4:e00446-16. Bakkeren, G., Joly, D.L., et S. Duplessis. (2016). Genomics research on non-model plant pathogens: delivering novel insights into rust fungus biology. Frontiers in Plant Science, 7:216. Novinscak, A., Gadkar, V., Joly, D.L., et M. Filion. (2016). Complete genome sequence of Pseudomonas brassicacearum LBUM300, a disease-suppressive bacterium with antagonistic activity towards fungal, oomycete and bacterial plant pathogens. Genome Announcements, 4:e01623-15. Brar, S., Tsui, C.K.M., Dhillon, B., Bergeron, M.-J., Joly, D.L., Zambino, P.J., El-Kassaby, Y.A., et R.C. Hamelin. (2015). Colonization history, host distribution, anthropogenic influence and landscape features shape populations of white pine blister rust, an invasive alien tree pathogen. PLoS ONE, 10:e0127916. Roquigny, R., Arseneault, T., Gadkar, V., Novinscak, A., Joly, D.L., et M. Filion. (2015). Complete genome sequence of the biocontrol strain Pseudomonas fluorescens LBUM223. Genome Announcements, 3:e00443-15. Chaudhari, P., Ahmed, B., Joly, D.L., et H. Germain. (2014). Effector biology during biotrophic invasion of plant cells. Virulence, 5:1-7. Petre, B., Joly, D.L., et S. Duplessis. (2014). Effector proteins of rust fungi. Frontiers in Plant Science, 5:416. Bruce, M., Neugebauer, K.A., Joly, D.L., Migeon, P., Cuomo, C.A., Wang, S., Akhunov, E., Bakkeren, G., Kolmer, J.A., et J.P. Fellers. (2014). Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat. Frontiers in Plant Science, 4:520. Lefebvre, F., Joly, D.L., Labbé, C., Teichmann, B., Linning, R., Belzile, F., Bakkeren, G., et R.R. Bélanger. (2013). The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by whole-genome comparative analysis. Plant Cell, 25:1946-1959. Petre, B., Lee, A.H.Y., et D.L. Joly. (2013). Effector wisdom. New Phytologist, 197:375-377. Hacquard, S.*, Joly, D.L.* (égaux), Lin, Y.-C., Tisserant, E., Feau, N., Delaruelle, C., Legué, V., Kohler, A., Tanguay, P., Petre, B., Frey, P., Van de Peer, Y., Rouzé, P., Martin, F., Hamelin, R.C., et S. Duplessis. (2012). A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Molecular Plant-Microbe Interactions, 25:279-293. COVER. Duplessis, S., Joly, D.L., et P.N. Dodds. (2012). Rust effectors. In Effectors in Plant-Microbes Interactions, Martin F and Kamoun S (eds), Wiley-Blackwell. Duplessis, S., Cuomo, C.A., Lin, Y.-C., Aerts, A., Tisserant, E., Veneault-Fourrey, C., Joly. D.L., Hacquard, S., an alphabetical list of 30 authors, Henrissat, B., Van de Peer, Y., Rouzé, P., Ellis, J.G., Dodds, P.N., Schein, J.E., Zhong, S., Hamelin, R.C., Grigoriev, I.V., Szabo, L.J., et F. Martin. (2011). Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Science USA, 108:9166-9171. Xu, J., Linning, R., Fellers, J., Dickinson, M., Zhu, W., Antonov, I., Joly, D.L., Donaldson, M.E., Eilam, T., Anikster, Y., Banks, T., Munro, S., Mayo, M., Wynhoven, B., Ali, J., Moore, R., McCallum, B., Borodovsky, M., Saville, B. et G. Bakkeren. (2011). Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi. BMC Genomics, 12:161. HIGHLY ACCESSED. Joly, D.L. (2010). Découverte et caractérisation des petites protéines sécrétées chez les rouilles foliaires du peuplier (Melampsora spp.). Thèse de Doctorat – Université Laval, Québec, Canada. Joly, D.L., Hacquard, S., Feau, N., Tanguay, P., Martin, F., Hamelin, R.C., et S. Duplessis. (2010). Chasing effectors in the secretome of Melampsora larici-populina. In Biology of plant-microbe interactions, Vol. 7, H. Antoun, T. Avis, L. Brisson, D. Prévost, and M. Trepanier, eds. International Society for Molecular Plant-Microbe Interactions, St. Paul, MN. Joly, D.L., Feau, N., Tanguay, P., et R.C. Hamelin. (2010). Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.). BMC Genomics, 11:422. HIGHLY ACCESSED. Feau, N., Vialle, A., Allaire, M., Tanguay, P., Joly, D.L., Frey, P., Callan, B.E., et R.C. Hamelin. (2009). Fungal pathogen (mis-) identifications: a case study with DNA barcodes on Melampsora rusts of aspen and white poplar. Mycological Research 113:713-724. Feau, N., Joly, D.L., et R.C. Hamelin. (2007). Poplar leaf rusts: model pathogens for a model tree. Canadian Journal of Botany, 85:1127-1135. Feau, N., Bergeron, M.-J., Joly, D.L., Roussel, F., et R.C. Hamelin. (2007). Detection and validation of EST-derived SNPs for poplar leaf rust Melampsora medusae f. sp. deltoidae. Molecular Ecology Notes, 7:1222-1228. Joly, D.L., Langor, D.W., et R.C. Hamelin. (2006). Molecular and morphological evidence for interspecific hybridization between Cronartium ribicola and Cronartium comandrae on Pinus flexilis in southwestern Alberta. Plant Disease, 90:1552. Joly, D.L. (2005). Analyse de la diversité génomique des populations de Cronartium ribicola, agent responsable de la rouille vésiculeuse du pin blanc. Mémoire de Ma?trise – Université Laval, Québec, Canada.