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The SIB Swiss Institute of bioinformatics' resources: Focus on curated databases Journal article; 2016; Nucleic Acids Research Links: IRIS | DOI Authors: Bultet LA,Aguilar-Rodríguez J,Ahrens CH,Ahrné EL,Ai N,Aimo L,Akalin A,Aleksiev T,Alocci D,Altenhoff A,Alves I,Ambrosini G,Pedone PA,Angelino P,Anisimova M,Appel R,Argoud-Puy G,Arnold K,Arpat B,Artimo P,Ascencao K,Auchincloss A,Axelsen K,Gerritsen VB,Bairoch A,Bansal P,Baratin D,Barbato A,Barbié V,Barras D,Barreiro M,Barret S,Bastian F,Neto TB,Baudis M,Beaudoing E,Beckmann JS,Bekkar AK,Ben Hamida Cammoun L,Benmohammed S,Bernard M,Bertelli C,Bertoni M,Bienert S,Bignucolo O,Bilbao A,Bilican A,Blank D,Blatter MC,Blum L,Bocquet J,Boeckmann B,Bolleman JT,Bordoli L,Bosshard L,Bouchet G,Bougueleret L,Boutet E,Bovigny C,Bratulic S,Breuza L,Bridge AJ,Britan A,Brito F,Frazão JB,Bruggmann R,Bucher P,Burdet F,Burger L,Cabello EM,Gomez RMC,Calderon S,Cannarozzi G,Carl S,Casas CC,Catherinet S,Périer RC,Charpilloz C,Chaskar PD,Chen W,Pepe AC,Chopard B,Chu HY,Civic N,Claassen M,Clottu S,Colombo M,Cosandier I,Coudert E,Crespo I,Creus M,Cuche B,Cuendet MA,Cusin I,Daga N,Daina A,Dauvillier JÔ,David F,Davydov I,De Sa Ricca Manadelo Ferreira M click to collapse
Thermodynamics-based Metabolite Sensitivity Analysis in Metabolic Networks. Journal article; 2016; Metab Eng Links: IRIS | Author's | DOI Authors: Kiparissides A,Hatzimanikatis V click to collapse
On the model-based optimization of secreting mammalian cell (GS-NS0) cultures Journal article; 2015; Biotechnology and Bioengineering Links: IRIS | UCL Discovery | DOI Authors: Kiparissides A,Pistikopoulos EN,Mantalaris A click to collapse
Design of In Silico Experiments as a Tool for Nonlinear Sensitivity Analysis of Knowledge-Driven Models Journal article; 2014; Industrial & Engineering Chemistry Research Links: IRIS | UCL Discovery | DOI Authors: Kiparissides A,Georgakis C,Mantalaris A,Pistikopoulos EN click to collapse
An in silico erythropoiesis model rationalizing synergism between stem cell factor and erythropoietin Journal article; 2013; Bioprocess and Biosystems Engineering Links: IRIS | UCL Discovery | DOI Authors: Phan THH,Saraf P,Kiparissides A,Mantalaris A,Song H,Lim M click to collapse
Improving Embryonic Stem Cell Expansion through the Combination of Perfusion and Bioprocess Model Design Journal article; 2013; PLoS ONE Links: IRIS | UCL Discovery | DOI Authors: Yeo D,Kiparissides A,Cha JM,Aguilar-Gallardo C,Polak JM,Tsiridis E,Pistikopoulos EN,Mantalaris A click to collapse
BIOPROCESS SYSTEMS ENGINEERING: TRANSFERRING TRADITIONAL PROCESS ENGINEERING PRINCIPLES TO INDUSTRIAL BIOTECHNOLOGY Journal article; 2012; Computational and Structural Biotechnology Journal Links: IRIS | UCL Discovery | DOI Authors: Koutinas M,Kiparissides A,Pistikopoulos EN,Mantalaris A click to collapse
Computational approach for understanding and improving GS-NS0 antibody production under hyperosmotic conditions Journal article; 2012; Journal of Bioscience and Bioengineering Links: IRIS | UCL Discovery | DOI Authors: Ho Y,Kiparissides A,Pistikopoulos EN,Mantalaris A click to collapse
Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid Journal article; 2011; Biochemical Engineering Journal Links: IRIS | UCL Discovery | DOI Authors: Koutinas M,Kiparissides A,Lam M-C,Silva-Rocha R,Godinho M,de Lorenzo V,Martins dos Santos VAP,Pistikopoulos EN,Mantalaris A click to collapse
Linking genes to microbial growth kinetics?An integrated biochemical systems engineering approach Journal article; 2011; Metabolic Engineering Links: IRIS | UCL Discovery | DOI Authors: Koutinas M,Kiparissides A,Silva-Rocha R,Lam M-C,Martins dos Santos VAP,de Lorenzo V,Pistikopoulos EN,Mantalaris A click to collapse
Modelling the Delta1/Notch1 Pathway: In Search of the Mediator(s) of Neural Stem Cell Differentiation Journal article; 2011; PLoS ONE Links: IRIS | UCL Discovery | DOI Authors: Kiparissides A,Koutinas M,Moss T,Newman J,Pistikopoulos EN,Mantalaris A click to collapse
?Closing the loop? in biological systems modeling ? From the in silico to the in vitro Journal article; 2011; Automatica Links: IRIS | UCL Discovery | DOI Authors: Kiparissides A,Koutinas M,Kontoravdi C,Mantalaris A,Pistikopoulos EN click to collapse
The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid Journal article; 2010; Environmental Microbiology Links: IRIS | UCL Discovery | DOI Authors: Koutinas M,Lam M-C,Kiparissides A,Silva-Rocha R,Godinho M,Livingston AG,Pistikopoulos EN,De Lorenzo V,Dos Santos VAPM,Mantalaris A click to collapse
Global Sensitivity Analysis Challenges in Biological Systems Modeling Journal article; 2009; Industrial & Engineering Chemistry Research Links: IRIS | UCL Discovery | DOI Authors: Kiparissides A,Kucherenko SS,Mantalaris A,Pistikopoulos EN click to collapse