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MICHAEL POUND, ALEXANDRA J BURGESS, MICHAEL H WILSON, JONATHAN A ATKINSON, MARCUS GRIFFITHS, AARON S JACKSON, ADRIAN BULAT, GEORGIOS TZIMIROPOULOS, DARREN M WELLS, ERIK H MURCHIE, TONY P PRIDMORE and ANDREW P FRENCH, 2016. Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping Biorxiv. Available at:
PASSOT, SIXTINE, GNACKO, FATOUMATA, MOUKOUANGA, DANIEL, LUCAS, MIKAEL, GUYOMARC'H, SOAZIG, ORTEGA, BEATRIZ MORENO, ATKINSON, JONATHAN A., BELKO, MAREME N., BENNETT, MALCOLM J., GANTET, PASCAL, WELLS, DARREN M., GUEDON, YANN, VIGOUROUX, YVES, VERDEIL, JEAN-LUC, MULLER, BERTRAND and LAPLAZE, LAURENT, 2016. Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots FRONTIERS IN PLANT SCIENCE. 7, 829
POUND, MICHAEL, FRENCH, ANDREW P. and WELLS, DARREN M., 2015. Quantification of Fluorescent Reporters in Plant Cells PLANT CELL EXPANSION: METHODS AND PROTOCOLS. 1242, 123-131
WILSON, MICHAEL H, HOLMAN, TARA J, SORENSEN, IBEN, CANCHO-SANCHEZ, ESTER, WELLS, DARREN M, SWARUP, RANJAN, KNOX, J PAUL, WILLATS, WILLIAM G T, UBEDA-TOMAS, SUSANA, HOLDSWORTH, MICHAEL, BENNETT, MALCOLM J, VISSENBERG, KRIS and HODGMAN, T CHARLIE, 2015. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Frontiers in cell and developmental biology. 3, 10
VOSS, UTE, WILSON, MICHAEL H., KENOBI, KIM, GOULD, PETER D., ROBERTSON, FIONA C., PEER, WENDY A., LUCAS, MIKAEL, SWARUP, KAMAL, CASIMIRO, ILDA, HOLMAN, TARA J., WELLS, DARREN M., PERET, BENJAMIN, GOH, TATSUAKI, FUKAKI, HIDEHIRO, HODGMAN, T. CHARLIE, LAPLAZE, LAURENT, HALLIDAY, KAREN J., LJUNG, KARIN, MURPHY, ANGUS S., HALL, ANTHONY J., WEBB, ALEX A. R. and BENNETT, MALCOLM J., 2015. The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana NATURE COMMUNICATIONS. 6,
JACQUES, EVELINE, WELLS, DARREN M, BENNETT, MALCOLM J and VISSENBERG, KRIS, 2015. Imaging and quantitative methods for studying cytoskeletal rearrangements during root development and gravitropism. Methods in molecular biology (Clifton, N.J.). 1309, 81-9
MAIRHOFER, STEFAN, STURROCK, CRAIG, WELLS, DARREN M., BENNETT, MALCOLM J., MOONEY, SACHA J. and PRIDMORE, TONY P., 2015. On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images FUNCTIONAL PLANT BIOLOGY. 42(5), 460-470
ATKINSON, JONATHAN A., WINGEN, LUZIE U., GRIFFITHS, MARCUS, POUND, MICHAEL P., GAJU, OORBESSY, FOULKES, M. JOHN, LE GOUIS, JACQUES, GRIFFITHS, SIMON, BENNETT, MALCOLM J., KING, JULIE and WELLS, DARREN M., 2015. Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat JOURNAL OF EXPERIMENTAL BOTANY. 66(8), 2283-2292
LARRIEU AP, FRENCH AP, PRIDMORE TP, BENNETT MJ and WELLS DM, 2014. Time-profiling fluorescent reporters in the Arabidopsis root. Methods in molecular biology (Clifton, N.J.). 1056, 11-17
BAND, LEAH R., WELLS, DARREN M., FOZARD, JOHN A., GHETIU, TEODOR, FRENCH, ANDREW P., POUND, MICHAEL P., WILSON, MICHAEL H., YU, LEI, LI, WENDA, HIJAZI, HUSSEIN I., OH, JAESUNG, PEARCE, SIMON P., PEREZ-AMADOR, MIGUEL A., YUN, JEONGA, KRAMER, ERIC, ALONSO, JOSE M., GODIN, CHRISTOPHE, VERNOUX, TEVA, HODGMAN, T. CHARLIE, PRIDMORE, TONY P., SWARUP, RANJAN, KING, JOHN R. and BENNETT, MALCOLM J., 2014. Systems Analysis of Auxin Transport in the Arabidopsis Root Apex PLANT CELL. 26(3), 862-875
ATKINSON, JONATHAN A., RASMUSSEN, AMANDA, TRAINI, RICHARD, VOSS, UTE, STURROCK, CRAIG, MOONEY, SACHA J., WELLS, DARREN M. and BENNETT, MALCOLM J., 2014. Branching Out in Roots: Uncovering Form, Function, and Regulation PLANT PHYSIOLOGY. 166(2), 538-550
DYSON, ROSEMARY J., VIZCAY-BARRENA, GEMA, BAND, LEAH R., FERNANDES, ANWESHA N., FRENCH, ANDREW P., FOZARD, JOHN A., HODGMAN, T. CHARLIE, KENOBI, KIM, PRIDMORE, TONY P., STOUT, MICHAEL, WELLS, DARREN M., WILSON, MICHAEL H., BENNETT, MALCOLM J. and JENSEN, OLIVER E., 2014. Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending NEW PHYTOLOGIST. 202(4), 1212-1222
WELLS DM, LAPLAZE L, BENNETT MJ and VERNOUX T, 2013. Biosensors for phytohormone quantification: challenges, solutions, and opportunities. Trends in plant science. 18(5), 244-249
JACQUES E, BUYTAERT J, WELLS DM, LEWANDOWSKI M, BENNETT MJ, DIRCKX J, VERBELEN J and VISSENBERG K, 2013. Microfilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule organization during gravitropism. The Plant journal. 74(6), 1045-1058
POUND, M.P., FRENCH, A.P., ATKINSON, J.A., WELLS, D.M., BENNETT, M.J. and PRIDMORE, T., 2013. RootNav: navigating images of complex root architectures Plant Physiology. 162(4), 1802-1814
PERET, BENJAMIN, MIDDLETON, ALISTAIR M., FRENCH, ANDREW P., LARRIEU, ANTOINE, BISHOPP, ANTHONY, NJO, MARIA, WELLS, DARREN M., PORCO, SILVANA, MELLOR, NATHAN, BAND, LEAH R., CASIMIRO, ILDA, KLEINE-VEHN, JUERGEN, VANNESTE, STEFFEN, SAIRANEN, ILKKA, MALLET, ROMAIN, SANDBERG, GORAN, LJUNG, KARIN, BEECKMAN, TOM, BENKOVA, EVA, FRIML, JIRI, KRAMER, ERIC, KING, JOHN R., DE SMET, IVE, PRIDMORE, TONY, OWEN, MARKUS and BENNETT, MALCOLM J., 2013. Sequential induction of auxin efflux and influx carriers regulates lateral root emergence MOLECULAR SYSTEMS BIOLOGY. 9,
VOSS, UTE, LARRIEU, ANTOINE and WELLS, DARREN M., 2013. From jellyfish to biosensors: the use of fluorescent proteins in plants INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 57(6-8), 525-533
BRUNOUD, G., WELLS, D.M., OLIVA, M., LARRIEU, A., MIRABET, V., BURROW, A.H., BEECKMAN, T., KEPINSKI, S., TRAAS, J., BENNETT, M.J. and VERNOUX, T., 2012. A novel sensor to map auxin response and distribution at high spatio-temporal resolution Nature. 482(7383), 103-106
BAND. L.R., WELLS, D.M., LARRIEU, A., SUN, J., MIDDLETON, A.M., FRENCH, A.P., BRUNOUD, G., SATO, E.M., WILSON, M.H., PéRET, B., OLIVA, M., SWARUP, R., SAIRANEN, I., PARRY, G., LJUNG, K., BEECKMAN, T., GARIBALDI, J.M., ESTELLE, M., OWEN, M.R., VISSENBERG, K., HODGMAN, T.C., PRIDMORE, T.P., KING, J.R., VERNOUX, T. and BENNETT, M.J., 2012. Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism Proceedings of the National Academy of Sciences of the United States of America. 109(12), 4668-4673
WELLS, D.M., FRENCH, A.P., NAEEM, A., ISHAQ, O., TRAINI, R., HIJAZI, H., BENNETT, M.J. and PRIDMORE, T.P., 2012. Recovering the dynamics of root growth and development using novel image acquisition and analysis methods Philosophical Transactions of the Royal Society B: Biological Sciences. 367(1595), 1517-1524
POUND, M.P., FRENCH, A.P., WELLS, D.M., BENNETT, M.J. and PRIDMORE, T.P., 2012. CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images Plant Cell. 24(4), 1353-1361
PERET B, LI G, ZHAO J, BAND L, VOSS U, POSTAIRE O, LUU D, DA INES O, CASIMIRO I, LUCAS M, WELLS D, LAZZERINI L, NACRY P, KING J, JENSEN O, SCHAFFNER A, MAUREL C and BENNETT MJ, 2012. Auxin regulates Aquaporin function to facilitate lateral root emergence. Nature Cell Biology. 10, 991-8
NELSON, M.R., BAND, L.R., DYSON, R.J., LESSINNES, T., WELLS, D.M., YANG, C., EVERITT, N.M., JENSEN, O.E. and WILSON, Z.A., 2012. A biomechanical model of anther opening reveals the roles of dehydration and secondary thickening New Phytologist. 196(4), 1030-1037
SETHURAMAN, V., FRENCH, A., WELLS, D., KENOBI, K. and PRIDMORE, T., 2012. Tissue-level segmentation and tracking of cells in growing plant roots Machine Vision and Applications. 23(4), 639-658
FERNANDES AN, CHEN X, SCOTCHFORD CA, WALKER J, WELLS DM, ROBERTS CJ and EVERITT NM, 2012. Mechanical properties of epidermal cells of whole living roots of arabidopsis thaliana: an atomic force microscopy study. Physical review. E, statistical, nonlinear, and soft matter physics. 85(2-1), 021916
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