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Role of ER accessory proteins in root development Role of non-protein coding RNA in lateral root development Impact of root architecture on resource use efficiency

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WILSON, MICHAEL H, HOLMAN, TARA J, SORENSEN, IBEN, CANCHO-SANCHEZ, ESTER, WELLS, DARREN M, SWARUP, RANJAN, KNOX, J PAUL, WILLATS, WILLIAM G T, UBEDA-TOMAS, SUSANA, HOLDSWORTH, MICHAEL, BENNETT, MALCOLM J, VISSENBERG, KRIS and HODGMAN, T CHARLIE, 2015. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Frontiers in cell and developmental biology. 3, 10 SATO EM, HIJAZI H, BENNETT MJ, VISSENBERG K and SWARUP R, 2015. New insights into root gravitropic signalling. Journal of experimental botany. 66(8), 2155-2165 MALEKPOOR MANSOORKHANI, F, SEYMOUR, G B, SWARUP, R, MOEINIYAN BAGHERI, H, RAMSEY, R J L and THOMPSON, A J, 2015. Environmental, developmental, and genetic factors controlling root system architecture. Biotechnology & genetic engineering reviews. 30(1-2), 95-112 PANOLI, ANEESH, MARTIN, MARIA VICTORIA, ALANDETE-SAEZ, MONICA, SIMON, MARISSA, NEFF, CHRISTINA, SWARUP, RANJAN, BELLIDO, ANDRES, YUAN, LI, PAGNUSSAT, GABRIELA C. and SUNDARESAN, VENKATESAN, 2015. Auxin Import and Local Auxin Biosynthesis Are Required for Mitotic Divisions, Cell Expansion and Cell Specification during Female Gametophyte Development in Arabidopsis thaliana PLOS ONE. 10(5), FABREGAS, NORMA, FORMOSA-JORDAN, PAU, CONFRARIA, ANA, SILIGATO, RICCARDO, ALONSO, JOSE M., SWARUP, RANJAN, BENNETT, MALCOLM J., MAHONEN, ARI PEKKA, CANO-DELGADO, ANA I. and IBANES, MARTA, 2015. Auxin Influx Carriers Control Vascular Patterning and Xylem Differentiation in Arabidopsis thaliana PLOS GENETICS. 11(4), ROBERT, HELENE S., GRUNEWALD, WIM, SAUER, MICHAEL, CANNOOT, BERNARD, SORIANO, MERCEDES, SWARUP, RANJAN, WEIJERS, DOLF, BENNETT, MALCOLM, BOUTILIER, KIM and FRIML, JIRI, 2015. Plant embryogenesis requires AUX/LAX-mediated auxin influx DEVELOPMENT. 142(4), 702-711 KASPRZEWSKA, ANIA, CARTER, ROSS, SWARUP, RANJAN, BENNETT, MALCOLM, MONK, NICK, HOBBS, JAMIE K. and FLEMING, ANDREW, 2015. Auxin influx importers modulate serration along the leaf margin PLANT JOURNAL. 83(4), 705-718 CONTI L, NELIS S, ZHANG C, WOODCOCK A, SWARUP R, GALBIATI M, TONELLI C, NAPIER R, HEDDEN P, BENNETT MJ and SADANANDOM A, 2014. Small Ubiquitin-like modifier protein SUMO enables plants to control growth independently of the phytohormone gibberellin Developmental Cell. 28, 102-110 BAND, LEAH R., WELLS, DARREN M., FOZARD, JOHN A., GHETIU, TEODOR, FRENCH, ANDREW P., POUND, MICHAEL P., WILSON, MICHAEL H., YU, LEI, LI, WENDA, HIJAZI, HUSSEIN I., OH, JAESUNG, PEARCE, SIMON P., PEREZ-AMADOR, MIGUEL A., YUN, JEONGA, KRAMER, ERIC, ALONSO, JOSE M., GODIN, CHRISTOPHE, VERNOUX, TEVA, HODGMAN, T. CHARLIE, PRIDMORE, TONY P., SWARUP, RANJAN, KING, JOHN R. and BENNETT, MALCOLM J., 2014. Systems Analysis of Auxin Transport in the Arabidopsis Root Apex PLANT CELL. 26(3), 862-875 KUMPF, ROBERT, THORSTENSEN, TAGE, RAHMAN, MOHUMMAD AMINUR, HEYMAN, JEFRI, NENSETH, H. ZEYNEP, LAMMENS, TIM, HERRMANN, ULLRICH, SWARUP, RANJAN, VEISETH, SILJE VEIE, EMBERLAND, GITIKA, BENNETT, MALCOLM J., DE VEYLDER, LIEVEN and AALEN, REIDUNN B., 2014. The ASH1-RELATED3 SET-Domain Protein Controls Cell Division Competence of the Meristem and the Quiescent Center of the Arabidopsis Primary Root PLANT PHYSIOLOGY. 166(2), 632-U272 SWARUP, R, WELLS, D and BENNETT, MJ, 2013. Root gravitropism. In: Roots:The Hidden half IV Edition. Eshel A & Beeckman T (eds) CRC Press, pp19-1 to 19-34. CRC Press. pp19-1 to 19-34. BAND. L.R., WELLS, D.M., LARRIEU, A., SUN, J., MIDDLETON, A.M., FRENCH, A.P., BRUNOUD, G., SATO, E.M., WILSON, M.H., PÉRET, B., OLIVA, M., SWARUP, R., SAIRANEN, I., PARRY, G., LJUNG, K., BEECKMAN, T., GARIBALDI, J.M., ESTELLE, M., OWEN, M.R., VISSENBERG, K., HODGMAN, T.C., PRIDMORE, T.P., KING, J.R., VERNOUX, T. and BENNETT, M.J., 2012. Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism Proceedings of the National Academy of Sciences of the United States of America. 109(12), 4668-4673 PÉRET, B., SWARUP, K., FERGUSON, A., SETH, M., YANG, Y., DHONDT, S., JAMES, N., CASIMIRO, I., PERRY, P., SYED, A., YANG, H., REEMMER, J., VENISON, E., HOWELLS, C., PEREZ-AMADOR, M.A., YUN, J., ALONSO, J., BEEMSTER, G.T.S., LAPLAZE, L., MURPHY, A., BENNETT, M.J., NIELSEN, E. and SWARUP, R., 2012. AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development The Plant Cell. 24(7), 2874-2885 SWARUP R and PÉRET B, 2012. AUX/LAX family of auxin influx carriers-an overview. Frontiers in plant science. 3, 225 DE SMET, IVE, VOSS, UTE, LAU, STEFFEN, WILSON, MICHAEL, SHAO, NING, TIMME, RUTH, SWARUP, RANJAN, KERR, IAN, HODGMAN, CHARLIE, BOCK, RALPH, BENNETT, MALCOLM, JÜRGENS, GERD and BEECKMAN, TOM, 2011. Unraveling the evolution of auxin signaling. Plant Physiology. 155, 209-221 LUCAS, M., SWARUP, R., PAPONOV, I.A., SWARUP, K., CASIMIRO, I., LAKE, D., PERET, B., ZAPPALA, S., MAIRHOFER, S., WHITWORTH, M., WANG, J., LJUNG, K. and ET AL, 2011. Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis. Plant Physiology. 155(1), 384-98 UGARTECHEA-CHIRINO, Y., SWARUP, R., SWARUP, K., PERET, B., WHITWORTH, M., BENNETT, M.J. and BOUGOURD, S., 2010. The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organisation in Arabidopsis thaliana Annals of Botany (Lond). 105((2)), 277-289 GE, L, PEER, W, ROBERT, S, SWARUP, R, YE, S, PRIGGE, M, COHEN, J D, FRIML, J, MURPHY, A, TANG, D and ESTELLE, M, 2010. Arabidopsis ROOT UVB SENSITIVE2/WEAK AUXIN RESPONSE1 is required for polar auxin transport. The Plant cell. 22(6), 1749-61 VANDENBUSSCHE, FILIP, PETRÁSEK, JAN, ZÁDNÍKOVÁ, PETRA, HOYEROVÁ, KLÁRA, PESEK, BEDRICH, RAZ, VERED, SWARUP, RANJAN, BENNETT, MALCOLM, ZAZÍMALOVÁ, EVA and BENKOV AND VAN DER STRAETEN, 2010. The auxin influx carriers AUX1 and LAX3 are involved in auxin-ethylene interactions during apical hook development in Arabidopsis thaliana seedlings. Development (Cambridge, England). 137(4), 597-606 PERET, B., DERYBEL, B., CASIMIRO, I., BENKOVA, E., SWARUP, R., LAPLAZE, L, BEECKMAN, T. and BENNETT,M.J., 2009. Arabidopsis lateral root development: an emerging story Trends in Plant Science. 14, 399-408 UBEDA-THOMAS, S., FEDERICI, F., CASIMIRO, I., BEEMSTER, G.T.S., BHALERAO, R., SWARUP, R., DOERNER, P., HASELOFF, J. and BENNETT, M.J., 2009. Gibberellin signaling in the endodermis controls Arabidopsis root meristem size Current Biology. 19(14), 1194-1199 JONES, A.R., KRAMER, E.M., KNOX, K., SWARUP, R., BENNETT, M.J., LAZARUS, C.M., LEYSER, H.M.O. and GRIERSON, C.S., 2009. Auxin transport through non-hair cells sustains root-hair development Nature Cell Biology. 11(1), 78-84 SWARUP R AND BENNETT M J, 2009. Root Gravitropism Annual Plant Reviews. 37, 157-174 (In Press.) SWARUP, K., BENKOVÁ, E., SWARUP, R., CASIMIRO, I., PÉRET, B., YANG, Y., PARRY, G., NIELSEN, E., DE SMET, I., VANNESTE, S., LEVESQUE, M., CARRIER, D., JAMES, N., CALVO, V. and LJUNG, K., 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology. 10(8), 946-954 CARRIER, D.J., ABU BAKAR, N.T., SWARUP, R., CALLAGHAN, R., NAPIER, R.M., BENNETT, M.J. and KERR, I.D., 2008. The binding of auxin to the Arabidopsis auxin influx transporter, AUX1 Plant Physiology. 148(1), 529-535

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