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ALMATHEN, FAISAL, CHARRUAU, PAULINE, MOHANDESAN, ELMIRA, MWACHARO, JORAM M., OROZCO-TERWENGEL, PABLO, PITT, DANIEL, ABDUSSAMAD, ABDUSSAMAD M., UERPMANN, MARGARETHE, UERPMANN, HANS-PETER, DE CUPERE, BEA, MAGEE, PETER, ALNAQEEB, MAJED A., SALIM, BASHIR, RAZIQ, ABDUL, DESSIE, TADELLE, ABDELHADI, OMER M., BANABAZI, MOHAMMAD H., AL-EKNAH, MARZOOK, WALZER, CHRIS, FAYER, BERNARD, HOFREITER, MICHAEL, PETERS, JORIS, HANOTTE, OLIVIER and BURGER, PAMELA A., 2016. Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 113(24), 6707-6712
KANDUMA, ESTHER G., MWACHARO, JORAM M., MWAURA, STEPHEN, NJUGUNA, JOYCE N., NZUKI, INOSTERS, KINYANJUI, PETER W., GITHAKA, NAFTALY, HEYNE, HELOISE, HANOTTE, OLIVIER, SKILTON, ROBERT A. and BISHOP, RICHARD P., 2016. Multi-locus genotyping reveals absence of genetic structure in field populations of the brown ear tick (Rhipicephalus appendiculatus) in Kenya TICKS AND TICK-BORNE DISEASES. 7(1), 26-35
CALLABY R, HANOTTE O, CONRADIE VAN WYK I, KIARA H, TOYE P, MBOLE-KARIUKI MN, JENNINGS A, THUMBI SM, COETZER JAW, DE C BRONSVOORT BM, KNOTT SA, WOOLHOUSE MEJ and KRUUK LEB, 2015. Variation and covariation in strongyle infection in East African shorthorn zebu calves. Parasitology. 142(3), 499-511
PETERS, JORIS, LEBRASSEUR, OPHELIE, BEST, JULIA, MILLER, HOLLY, FOTHERGILL, TYR, DOBNEY, KEITH, THOMAS, RICHARD M., MALTBY, MARK, SYKES, NAOMI, HANOTTE, OLIVIER, O'CONNOR, TERRY, COLLINS, MATTHEW J. and LARSON, GREGER, 2015. Questioning new answers regarding Holocene chicken domestication in China PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 112(19), E2415-E2415
WOOLHOUSE ME, THUMBI SM, JENNINGS A, CHASE-TOPPING M, CALLABY R, KIARA H, OOSTHUIZEN MC, MBOLE-KARIUKI MN, CONRADIE I, HANDEL IG, POOLE EJ, NJIIRI E, COLLINS NE, MURRAY G, TAPIO M, AUGUET OT, WEIR W, MORRISON WI, KRUUK LE, BRONSVOORT BM, HANOTTE O, COETZER K and TOYE PG, 2015. Co-infections determine patterns of mortality in a population exposed to parasite infection. Science advances. 1(2), e1400026
MWAI, OKEYO, HANOTTE, OLIVIER, KWON, YOUNG-JUN and CHO, SEOAE, 2015. African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES. 28(7), 911-921
BENAVIDES, MAGDA VIEIRA, SONSTEGARD, TAD S., KEMP, STEPHEN, MUGAMBI, JOHN M., GIBSON, JOHN P., BAKER, ROBERT LEYDEN, HANOTTE, OLIVIER, MARSHALL, KAREN and VAN TASSELL, CURTIS, 2015. Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population PLOS ONE. 10(4),
BRUFORD, MICHAEL W., GINJA, CATARINA, HOFFMANN, IRENE, JOOST, STEPHANE, OROZCO-TERWENGELL, PABLO, ALBERTO, FLORIAN J., AMARAL, ANDREIA J., BARBATO, MARIO, BISCARINI, FILIPPO, COLLI, LICIA, COSTA, MAFALDA, CURIK, INO, DURUZ, SOLANGE, FERENCAKOVIC, MAJA, FISCHER, DANIEL, FITAK, ROBERT, GROENEVELD, LINN F., HALL, STEPHEN J. G., HANOTTE, OLIVIER, HASSAN, FAIZ-UL, HELSEN, PHILIPPE, IACOLINA, LAURA, KANTANEN, JUHA, LEEMPOEL, KEVIN, LENSTRA, JOHANNES A., AJMONE-MARSAN, PAOLO, MASEMBE, CHARLES, MEGENS, HENDRIK-JAN, MIELE, MARA, NEUDITSCHKO, MARKUS, NICOLAZZI, EZEQUIEL L., POMPANON, FRANCOIS, ROOSEN, JUTTA, SEVANE, NATALIA, SMETKO, ANAMARIJA, STAMBUK, ANAMARIA, STREETER, IAN, STUCKI, SYLVIE, SUPAKORN, CHINA, DA GAMA, LUIS TELO, TIXIER-BOICHARD, MICHELE, WEGMANN, DANIEL and ZHAN, XIANGJIANG, 2015. Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025 Frontiers in Genetics. 6, Article No.: 314
KEMP, STEPHEN, BENAVIDES, MAGDA VIEIRA, MUGAMBI, JOHN M, GIBSON, JOHN P, BAKER, ROBERT LEYDEN, MARSHALL, KAREN, VAN TASSELL, CURTIS, HANOTTE, OLIVIER and SONSTEGARD, TAD S, 2015. Descriptive statistics of Red Maasai x Dorper backcrossed sheep selected phenotypes. Figshare.
BAHBAHANI H and HANOTTE O, 2015. Genetic resistance: tolerance to vector-borne diseases and the prospects and challenges of genomics. Revue scientifique et technique (International Office of Epizootics). 34(1), 185-97
WRAGG D, MASON AS, YU L, KUO R, LAWAL RA, DESTA TT, MWACHARO JM, CHO CY, KEMP S, BURT DW and HANOTTE O, 2015. Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken. BMC genomics. 16, 784
SCHMID M, SMITH J, BURT DW, AKEN BL, ANTIN PB, ARCHIBALD AL, ASHWELL C, BLACKSHEAR PJ, BOSCHIERO C, BROWN CT, BURGESS SC, CHENG HH, CHOW W, COBLE DJ, COOKSEY A, CROOIJMANS RP, DAMAS J, DAVIS RV, DE KONING DJ, DELANY ME, DERRIEN T, DESTA TT, DUNN IC, DUNN M, ELLEGREN H, E?RY L, ERB I, FARRé M, FASOLD M, FLEMING D, FLICEK P, FOWLER KE, FRéSARD L, FROMAN DP, GARCEAU V, GARDNER PP, GHEYAS AA, GRIFFIN DK, GROENEN MA, HAAF T, HANOTTE O, HART A, H?SLER J, HEDGES SB, HERTEL J, HOWE K, HUBBARD A, HUME DA, KAISER P, KEDRA D, KEMP SJ, KLOPP C, KNIEL KE, KUO R, LAGARRIGUE S, LAMONT SJ, LARKIN DM, LAWAL RA, MARKLAND SM, MCCARTHY F, MCCORMACK HA, MCPHERSON MC, MOTEGI A, MULJO SA, MüNSTERBERG A, NAG R, NANDA I, NEUBERGER M, NITSCHE A, NOTREDAME C, NOYES H, O'CONNOR R, O'HARE EA, OLER AJ, OMMEH SC, PAIS H, PERSIA M, PITEL F, PREEYANON L, PRIETO BARJA P, PRITCHETT EM, RHOADS DD, ROBINSON CM, ROMANOV MN, ROTHSCHILD M, ROUX PF, SCHMIDT CJ, SCHNEIDER AS, SCHWARTZ MG, SEARLE SM, SKINNER MA, SMITH CA, STADLER PF, STEEVES TE, STEINLEIN C, SUN L, TAKATA M, ULITSKY I, WANG Q, WANG Y, WARREN WC, WOOD JM, WRAGG D and ZHOU H, 2015. Third Report on Chicken Genes and Chromosomes 2015. Cytogenetic and genome research. 145(2), 78-179
BAHBAHANI H, CLIFFORD H, WRAGG D, MBOLE-KARIUKI MN, VAN TASSELL C, SONSTEGARD T, WOOLHOUSE M and HANOTTE O, 2015. Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis. Scientific reports. 5, 11729
SMETKO A, SOUDRE A, SILBERMAYR K, MüLLER S, BREM G, HANOTTE O, BOETTCHER PJ, STELLA A, MéSZáROS G, WURZINGER M, CURIK I, MüLLER M, BURGSTALLER J and S?LKNER J, 2015. Trypanosomosis: potential driver of selection in African cattle. Frontiers in genetics. 6, 137
THUMBI SM, BRONSVOORT BMDC, POOLE EJ, KIARA H, TOYE PG, MBOLE-KARIUKI MN, CONRADIE I, JENNINGS A, HANDEL IG, COETZER JAW, STEYL JCA, HANOTTE O and WOOLHOUSE MEJ, 2014. Parasite co-infections and their impact on survival of indigenous cattle. PloS one. 9(2), e76324
VAN WYK IC, GODDARD A, DE C BRONSVOORT BM, COETZER JAW, HANDEL IG, HANOTTE O, JENNINGS A, LESOSKY M, KIARA H, THUMBI SM, TOYE P, WOOLHOUSE MW and PENZHORN BL, 2014. The impact of co-infections on the haematological profile of East African Short-horn Zebu calves. Parasitology. 141(3), 374-88
DECKER JE, MCKAY SD, ROLF MM, KIM J, MOLINA ALCALá A, SONSTEGARD TS, HANOTTE O, G?THERSTR?M A, SEABURY CM, PRAHARANI L, BABAR ME, CORREIA DE ALMEIDA REGITANO L, YILDIZ MA, HEATON MP, LIU W, LEI C, REECY JM, SAIF-UR-REHMAN M, SCHNABEL RD and TAYLOR JF, 2014. Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS genetics. 10(3), e1004254
MBOLE-KARIUKI MN, SONSTEGARD T, ORTH A, THUMBI SM, BRONSVOORT BMDC, KIARA H, TOYE P, CONRADIE I, JENNINGS A, COETZER K, WOOLHOUSE MEJ, HANOTTE O and TAPIO M, 2014. Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya. Heredity. 113(4), 297-305
KIARA H, JENNINGS A, BRONSVOORT BMDC, HANDEL IG, MWANGI ST, MBOLE-KARIUKI M, VAN WYK IC, POOLE EJ, HANOTTE O, COETZER JAW, WOOLHOUSE MEJ and TOYE PG, 2014. A longitudinal assessment of the serological response to Theileria parva and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya. Parasitology. 141(10), 1289-98
BETTRIDGE JM, LYNCH SE, BRENA MC, MELESE K, DESSIE T, TERFA ZG, DESTA TT, RUSHTON S, HANOTTE O, KAISER P, WIGLEY P and CHRISTLEY RM, 2014. Infection-interactions in Ethiopian village chickens. Preventive veterinary medicine. 117(2), 358-66
SALIM B, TAHA KM, HANOTTE O and MWACHARO JM, 2014. Historical demographic profiles and genetic variation of the East African Butana and Kenana indigenous dairy zebu cattle. Animal genetics. 45(6), 782-90
MWACHARO, JORAM M, NOMURA, KOH, HANADA, HIROFUMI, AMANO, TAKASHI, HAN, JIANLIN L and HANOTTE, OLIVIER, 2014. Genotypes of Indigenous chicken from East Africa Dryad.
DECKER, JARAD EGAN, MCKAY, STEPHANIE D, ROLF, MEGAN M, KIM, JAEWOO, ALCALA, ANTONIO MOLINA, SONSTEGARD, TAD S, HANOTTE, OLIVIER, GOTHERSTROM, ANDERS, SEABURY, CHRISTOPHER M, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, YILDIZ, MEHMET ALI, HEATON, MICHEAL P, LIU, WAN-SHENG, LEI, CHU-ZHAO, REECY, JAMES M, SAIF-UR-REHMAN, MUHAMMAD, SCHNABEL, ROBERT D and TAYLOR, JEREMY F, 2014. Genotypes, SNP information, and sample information for 1,543 cattle from 134 breeds Dryad.
LIU, WAN-SHENG, ROLF, MEGAN M, KIM, JAEWOO, DECKER, JARED E, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, TAYLOR, JEREMY F, SAIF-UR-REHMAN, MUHAMMAD, YILDIZ, MEHMET ALI, HEATON, MICHAEL P, SEABURY, CHRISTOPHER M, LEI, CHU-ZHAO, HANOTTE, OLIVIER, MCKAY, STEPHANIE D, SCHNABEL, ROBERT D, SONSTEGARD, TAD S, REECY, JAMES M, ALCALA, ANTONIO MOLINA and GOTHERSTROM, ANDERS, 2014. Figure_S4.tif Figshare.
LIU, WAN-SHENG, ROLF, MEGAN M, KIM, JAEWOO, DECKER, JARED E, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, TAYLOR, JEREMY F, SAIF-UR-REHMAN, MUHAMMAD, YILDIZ, MEHMET ALI, HEATON, MICHAEL P, SEABURY, CHRISTOPHER M, LEI, CHU-ZHAO, HANOTTE, OLIVIER, MCKAY, STEPHANIE D, SCHNABEL, ROBERT D, SONSTEGARD, TAD S, REECY, JAMES M, ALCALA, ANTONIO MOLINA and GOTHERSTROM, ANDERS, 2014. Figure_S10.tif Figshare.
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