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The molecular evolution of viruses Self-referential networks in systems biology, and their philosophical implications Winter respiratory infections in the Lancaster area Ebola, MERS and other novel pandemic threats

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The serology of Ebolavirus - a wider geographical range, a wider genus of viruses, or a wider range of virulence?Formella, M., Gatherer, D. 12/2016 In: Journal of General Virology. 97, 12, p. 3120-3130. 11 p. Rosen's (M,R) system as an X-machinePalmer, M.L., Williams, R.A., Gatherer, D. 7/11/2016 In: Journal of Theoretical Biology. 408, p. 97-104. 8 p. Towards the knowledge-based design of universal influenza epitope ensemble vaccinesSheikh, Q.M., Gatherer, D., Reche, P.A., Flower, D.R. 10/07/2016 In: Bioinformatics. 32, 21, p. 3233-3239. 7 p. Tempus et Locus: a tool for extracting precisely dated viral sequences from GenBank, and its application to the phylogenetics of primate erythroparvovirus 1 (B19V)Carter, A.R., Gatherer, D. 4/07/2016 In: Biorxiv. 2016, 13 p. Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79Bowen, C.D., Renner, D.W., Shreve, J.T., Tafuri, Y., Payne, K.M., Dix, R.D., Kinchington, P.R., Gatherer, D., Szpara, M.L. 05/2016 In: Virology. 492, p. 179-186. 8 p. Erratum: Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host (Nucleic Acids Research (2016) 43:13 (6191-6206) (DOI:10.1093/nar/gkv587))Aguiar, E.R.G.R., Olmo, R.P., Paro, S., Ferreira, F.V., de Faria, I.J.d.S., Todjro, Y.M.H., Lobo, F.P., Kroon, E.G., Meignin, C., Gatherer, D., Imler, J., Marques, J.T. 21/01/2016 In: Nucleic Acids Research. 44, 7, p. 3477-3478. 2 p. WHO collaborative study to assess the suitability of an interim standard for antibodies to Ebola virusDianna, W., Page, M., Almond, N., Anderson, R., Berry, N., Dougall, T., Efstathiou, S., Hassall, M., Mattiuzzo, G., Peter, R., Rose, N., Schepelmann, S., Stone, L., Minor, P.D., Labrosse, B., Leculier, C., Pannetier, D., Strecker, T., Krahling, V., Schnierle, B., Capobianchi, M., Castilletti, C., Gatherer, D., Bishop, L., Hartman, K., Lauder, R., Wright, E., Tedder, R., Samuel, D., Dicks, S., Rudge, T., Simmons, G., Kaplan, G., Khuran, S., Weiss, C.D., Hogrefe, W., Rodriguez, N., Hsu, A., Honko, A.N., Bennett, R.S., Pettitt, J., Janosko, K., Marchand, J., Postnikova, E., Wu, H., Griffiths, A., Hooper, J.W. 1/01/2016 Geneva : World Health Organization Rosen's (M,R) system in Unified Modelling LanguageZhang, L., Williams, R., Gatherer, D. 01/2016 In: BioSystems. 139, p. 29-36. 8 p. Zika virus: a previously slow pandemic spreads rapidly through the AmericasGatherer, D., Kohl, A. 18/12/2015 In: Journal of General Virology. 97, 2, p. 269-273. 5 p. The genome of a tortoise herpesvirus (testudinid herpesvirus 3) has a novel structure and contains a large region that is not required for replication in vitro or virulence in vivoGandar, F., Wilkie, G.S., Gatherer, D., Kerr, K., Marlier, D., Diez, M., Marschang, R.E., Mast, J., Dewals, B.G., Davison, A.J., Vanderplasschen, A.F.C. 11/2015 In: Journal of Virology. 89, 22, p. 11438-11456. 19 p. Viral genotype correlates with distinct liver gene transcription signatures in chronic hepatitis C virus infectionRobinson, M.W., Aranday-Cortes, E., Gatherer, D., Swann, R., Liefhebber, J.M.P., Filipe, A.D.S., Sigruener, A., Barclay, S.T., Mills, P.R., Patel, A.H., McLauchlan, J. 10/2015 In: Liver International. 35, 10, p. 2256-2264. 9 p. Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the hostAguiar, E.R.G.R., Olmo, R.P., Paro, S., Ferreira, F.V., de Faria, I.J.d.S., Todjro, Y.M.H., Lobo, F.P., Kroon, E.G., Meignin, C., Gatherer, D., Imler, J., Marques, J.T. 3/06/2015 In: Nucleic Acids Research. An N-terminal extension to the hepatitis B virus core protein forms a poorly ordered trimeric spike in assembled virus-like particlesMcGonigle, R., Yap, W.B., Ong, S.T., Gatherer, D., Bakker, S.E., Tan, W.S., Bhella, D. 02/2015 In: Journal of Structural Biology. 189, 2, p. 73-80. 8 p. The unprecedented scale of the West African Ebola virus disease outbreak is due to environmental and sociological factors, not special attributes of the currently circulating strain of the virusGatherer, D. 02/2015 In: Evidence Based Medicine. 20, 1, p. 28. 1 p. Modelling the structure of full-length Epstein-Barr virus nuclear antigen 1Hussain, M., Gatherer, D., Wilson, J.B. 12/2014 In: Virus Genes. 49, 3, p. 358-372. 15 p. Non-random escape pathways from a broadly neutralizing human monoclonal antibody map to a highly conserved region on the hepatitis C virus E2 glycoprotein encompassing amino acids 412-423Keck, Z., Angus, A.G.N., Wang, W., Lau, P., Wang, Y., Gatherer, D., Patel, A.H., Foung, S.K.H. 08/2014 In: PLoS Pathogens. 10, 8, 13 p. The 2014 Ebola virus disease outbreak in West AfricaGatherer, D. 08/2014 In: Journal of General Virology. 95, 8, p. 1619-1624. 6 p. The family ParvoviridaeCotmore, S.F., Agbandje-McKenna, M., Chiorini, J.A., Mukha, D.V., Pintel, D.J., Qiu, J., Soderlund-Venermo, M., Tattersall, P., Tijssen, P., Gatherer, D., Davison, A.J. 05/2014 In: Archives of Virology. 159, 5, p. 1239-1247. 9 p. Stability of the parainfluenza virus 5 genome revealed by deep sequencing of strains isolated from different hosts and following passage in cell cultureRima, B.K., Gatherer, D., Young, D.F., Norsted, H., Randall, R.E., Davison, A.J. 04/2014 In: Journal of Virology. 88, 7, p. 3826-3836. 11 p. Interleukin-10s encoded by viruses: a remarkable example of independent acquisitions of a cellular gene by viruses and its subsequent evolution in the viral genomeOuyang, P., Rakus, K., van Beurden, S., Westphal, A., Davison, A., Gatherer, D., Vanderplasschen, A. 02/2014 In: Journal of General Virology. 95, 2, p. 245-262. 18 p. Evolution and diversity in human herpes simplex virus genomesSzpara, M.L., Gatherer, D., Ochoa, A., Greenbaum, B., Dolan, A., Bowden, R.J., Enquist, L.W., Legendre, M., Davison, A.J. 01/2014 In: Journal of Virology. 88, 2, p. 1209-1227. 19 p. Rosen's (M,R) system in process algebraGatherer, D., Galpin, V. 17/11/2013 In: BMC Systems Biology. 7, 1, 10 p. Deep sequencing analysis of defective genomes of parainfluenza virus 5 and their role in interferon inductionKillip, M.J., Young, D.F., Gatherer, D., Ross, C.S., Short, J.A.L., Davison, A.J., Goodbourn, S., Randall, R.E. 05/2013 In: Journal of Virology. 87, 9, p. 4798-4807. 10 p. Comparative genomics of carp herpesvirusesDavison, A.J., Kurobe, T., Gatherer, D., Cunningham, C., Korf, I., Fukuda, H., Hedrick, R.P., Waltzek, T.B. 03/2013 In: Journal of Virology. 87, 5, p. 2908-2922. 15 p. Molecular methods of virus detection in lymphomaJarrett, R.F., Gallagher, A., Gatherer, D. 2013 In: Lymphoma. Humana Press p. 277-293. 17 p. ISBN: 978-1-62703-268-1. Electronic ISBN: 978-1-62703-269-8.

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