个人简介
教育经历
2010.09 – 2015.07 中国科学院生态环境研究中心，环境科学，理学博士，导师：朱永官院士
2006.09 – 2010.07 南京农业大学，农业资源与环境，农学学士
工作经历
2020.11至今 华东师范大学，研究员（紫江青年）
2017.08-2020.10 美国佐治亚理工学院，博士后
2015.07-2017.07 北京师范大学，博士后
荣誉及奖励
2021 中国生态学学会青年人才托举工程（2021-2023年）项目C类被托举人
2022 上海市领军人才（青年）
研究领域
研究领域：微生物生态学、环境微生物学、生物信息学
研究兴趣：基于微生物生态、环境微生物和生物信息学的交叉学科，主要关注：
1. 开发用于检测高通量测序数据中功能基因片段的生物信息学工具
基于抗生素抗性基因、砷代谢基因的数据库构建ROCker模型用于定量及定性分析环境样品，如土壤及水体中微生物的抗生素抗性基因和砷代谢基因。
2. 土壤微生物响应环境胁迫的生态学机制
主要研究砷胁迫条件下，水稻土中微生物群落结构及功能组成的变化，砷的生物地球化学循环过程，以及砷与其他元素耦合过程的微生物生态学机制。
3. 微生物响应城市化进程的生态学机制及其环境健康效应
应用宏基因组学、宏转录组学等手段，结合生物信息学分析方法，研究城市化进程中，环境微生物在群落结构和功能组成方面的变化，以及生态系统功能的变化（如，生物地球化学循环和提升人群健康等方面）。
近期论文
查看导师新发文章
（温馨提示：请注意重名现象，建议点开原文通过作者单位确认）
第一及通讯作者
Si-Yu Zhang, Brittany J. Suttner, Luis M. Rodriguez-R, Luis H. Orellana, Roth E. Conrad, Fang Liu, Jessica L. Rowell, Hattie E. Webb, Amanda J. Williams-Newkirk, Andrew Huang, Konstantinos T. Konstantinidis. ROCker models for reliable detection and typing of short read sequences carrying β-lactamases. mSystems. 2022. 7 (3): e01281-21.
Si-Yu Zhang*, Xiao Xiao, Song-Can Chen, Yong-Guan Zhu, Guo-Xin Sun, and Konstantinos T. Konstantinidis*. High Arsenic Levels Increase Activity Rather than Diversity or Abundance of Arsenic Metabolism Genes in Paddy Soils. Applied and Environmental Microbiology. 2021. 87 (20): e01383-21.
Si-Yu Zhang, Despina Tsementzi, Janet K. Hatt,Aaron Bivins, Nikunj Khelurkar, Joe Brown, Sachchida Nand Tripathi, Konstantinos T. Konstantinidis. Intensive allochthonous inputs along the Ganges River and their effect on microbial community composition and dynamics. Environmental Microbiology. 2019. 21 (1): 182-196. (Top downloaded paper 2018-2019 in Environmental Microbiology)
Si-Yu Zhang, Jian-Qiang Su, Guo-Xin Sun, Yunfeng Yang, Yi Zhao, Junjun Ding, Yong-Shan Chen, Yu Shen, Guibing Zhu, Christopher Rensing, Yong-Guan Zhu. Land scale biogeography of arsenic biotransformation genes in estuarine wetland. Environmental Microbiology. 2017. 19 (6): 2468-2482.
Si-Yu Zhang, Paul N. Williams, Jinming Luo, Y.-G. Zhu. Microbial mediated arsenic biotransformation in wetlands. Frontiers of Environmental Science & Engineering. 2017. 722 (25): 555-563.
Si-Yu Zhang, Fang-Jie Zhao, Guoxin Sun, Jianqiang Su, Xiaoru Wang, Hu Li, Yong-guan Zhu. Diversity and abundance of arsenic biotransformation genes in Chinese paddy soils. Environmental Science & Technology. 2015. 49 (7): 4138-4146.
Siyu Zhang, Dan Wang, Yihua Wang, Henrik Hasman, Frank M. Aarestrup, Hend A. Alwathnani, Yong-Guan Zhu, Christoper Rensing. Genome sequences of copper resistant and sensitive Enterococcus faecalis strain isolated from copper-fed pigs in Denmark. Standards in Genomic Sciences. 2015. 10 (35): 1-10.
Siyu Zhang, Christopher Rensing, Yong-guan Zhu. Cyanobacteria–mediated arsenic redox dynamics is regulated by phosphate in aquatic environment. Environmental Science & Technology. 2014. 48 (2): 994-1000.
Si-Yu Zhang, Guoxin Sun, Xixiang Yin, Christopher Rensing, Yong-guan Zhu. Biomethylation and volatilization of arsenic by the marine microalgae Ostreococcus tauri. Chemosphere. 2013. 93 (1): 47-53.
共同作者
Bing Wang, Yunlong Liu, Siyu Zhang, Kaihang Zhang, Pedro Alvarez, John C. Crittenden, Bing Sun, Lin Yang, Su Liu, Zhilin Ran*. High Concentration Organic Wastewater with High Phosphorus Treatment by Facultative MBR. Water. 2021. 13 (20): 2902.
Song-Can Chen, Guo-Xin Sun, Yu Yan, Konstantinos T Konstantinidis, Si-Yu Zhang, Ye Deng, Xiao-Min Li, Hui-Ling Cui, Florin Musat, Denny Popp, Barry P Rosen, Yong-Guan Zhu. The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling. Proceedings of the National Academy of Sciences. 2020. 117 (19): 10414–10421.
Haiqing Chang, Baicang Liu, Huizhong Wang, Si-Yu Zhang, Sheng Chen, Alberto Tiraferri, Yue-Qin Tang. Evaluating the performance of gravity-driven membrane filtration as desalination pretreatment of shale gas flowback and produced water. Journal of Membrane Science. 2019. 587.
Yong-Guan Zhu, Yi Zhao, Bing Li, Chu-Long Huang, Si-Yu Zhang, Shen Yu, Yong-Shan Chen, Tong Zhang, Michael R Gillings, Jian-Qiang Su. Continental-scale pollution of estuarines with antibiotic resistance genes. Nature Microbiology. 2017. 2: 1-7.(高被引论文)
Song-Can Chen, Guo-Xin Sun, Barry P Rosen, Si-Yu Zhang, Ye Deng, Bo-Kai Zhu, Christopher Rensing, Yong-Guan Zhu. Recurrent horizontal transfer of arsenite methyltransferase genes facilitated adaptation of life to arsenic. Scientific Reports. 2017. 7(1).
Ke-Qing Xiao, Li-Guan Li, Li-Ping Ma, Si-Yu Zhang, Peng Bao, Tong Zhang, Yong-Guan Zhu. Metagenomic analysis revealed highly diverse microbial arsenic metabolism genes in paddy soils with low-arsenic content. Environmental Pollution. 2016. 211: 1-8.
Xiuli Hao, Freya L. Lüthje, Yanan Qin, Sylvia Franke McDevitt, Nataliya Lutay, Jon Hobman, Karishma Asiani, Fernando C. Soncini, Nadezhda German, Si-Yu Zhang, Yong-Guan Zhu and Christopher Rensing. Survival in amoeba-a major selection pressure on the presence of bacterial copper and zinc resistance determinants? Identification of a ‘copper pathogenicity island’. Applied Microbiology and Biotechnology. 2015. 99 (14): 5817 – 5824.
Ke-Qing Xiao, Li-Hong Wang, Ren Bai, Si-Yu Zhang, Xi-Xiang Yin. Arsenic biotransformation in Cyanobacterium Synechocystissp. PCC 6803 under different phosphate regimes. Fresenius Environmental Bulletin. 2012. 21(9): 2551-2557.
学术兼职
Environmental Microbiology, Applied Microbiology and Biotechnology 等期刊审稿人
中国土壤学会青年工作委员会 创新委员
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