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Genetic origins and adaptive evolution of the Deng people on the Tibetan Plateau Xueling Ge, Yan Lu, Shuanghui Chen, Yang Gao, Lifeng Ma, Lijun Liu, Jiaojiao Liu, Xixian Ma, Longli Kang, Shuhua Xu Molecular Biology and Evolution 2023/9/15
A protocol for applying low-coverage whole-genome sequencing data in structural variation studies Qi Liu, Bo Xie, Yang Gao, Shuhua Xu, Yan Lu STAR Protocol 2023/9/15
The human pangenome reference: the beginning of a new era for genomics Bo Wang, Ningxin Dang, Xiaofei Yang, Shuhua Xu, Kai Ye Science Bulletin 2023/7/30
A pangenome reference of 36 Chinese populations Yang Gao, Xiaofei Yang, Hao Chen, Xinjiang Tan, Zhaoqing Yang, Lian Deng, Baonan Wang, Shuang Kong, Songyani, Yuhang Can, Yu, C Lhanui Yimin gWgg Lei,wen Pan, Sen Ma, Hao Sun, Xiaohan Zhao, Yingbing Shi, Ziyi Yang, Dongdong Wu, Shaoyuan Wu, Xingming Zhao, Binyin Shi, Li Jin, Zhibin Hu, Chinese Pangenome Consortium (CPC), Yan Lu*, Jiayou Chu*, Kai Ye*, Shuhua Xu* Nature 2023/6/14
Genome-wide DNA methylation landscape of four Chinese populations and epigenetic variation linked to Tibetan high-altitude adaptation Zeshan Lin, Yan Lu, Guoliang Yu, Huajing Teng, Bao Wang, Yajun Yang, Qinglan Li, Zhongsheng Sun, Shuhua Xu, Wen Wang, Peng Tian SCIENCE CHINA Life Sciences 2023/4/23
Mapping structural variations in Haemaphysalis longicornis and Rhipicephalus microplus reveals vector-pathogen adaptation Qi Liu, Ke Yang, Bo Xie, Yang Gao, Shuhua Xu, Yan Lu iScience 2023/4/21
Expression profiles of east–west highly differentiated genes in Uyghur genomes Zhilin Ning, Xinjiang Tan, Yuan Yuan, Ke Huang, Yuwen Pan, Lei Tian, Yan Lu, Xiaoji Wang, Ruicheng Qi, Dongsheng Lu, Yajun Yang, Yaqun Guan, Dolikun Mamatyusupu, Shuhua Xu National Science Review 2023/3/21
Comparative genomic and transcriptomic analyses reveal the impacts of genetic admixture in Kazaks, Uyghurs, and Huis Yuwen Pan, Jia Wen, Zhilin Ning, Yuan Yuan, Xubing Liu, Yajun Yang, Yaqun Guan, Yan Lu, Dolikun Mamatyusupu, Shuhua Xu Molecular Biology and Evolution 2023/3/4
Understanding the contemporary high obesity rate from an evolutionary genetic perspective Tong Wu, Shuhua Xu Hereditas 2023/2/7
Landscape of pathogenic mutations in premature ovarian insufficiency Hanni Ke , Shuyan Tang,Ting Guo, Dong Hou, Xue Jiao,Shan Li, Wei Luo, Bingying Xu, Shidou Zhao, Guangyu Li, Xiaoxi Zhang, Shuhua Xu, Lingbo Wang, Yanhua Wu, Jiucun Wang, Feng Zhang,Yingying Qin, Li Jin, Zi-Jiang Chen, Nature Medicine 2023/2/2
Methods for Reconstructing the Admixture History of Humans Rui Zhang, Shuhua Xu Science (KEXUE) 2023/1/25
PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform Yimin Wang, Yunchao Ling, Jiao Gong, Xiaohan Zhao, Hanwen Zhou, Bo Xie, Haiyi Lou, Xinhao Zhuang, Li Jin, Han100K Initiative, Shaohua Fan, Guoqing Zhang, Shuhua Xu Nucleic Acids Research 2023/1/6
PGG.MHC: toward understanding the diversity of major histocompatibility complexes in human populations Xiaohan Zhao, Sen Ma, Baonan Wang, Xuetong Jiang, The Han100K Initiative, Shuhua Xu Nucleic Acids Research 2023/1/6
Archaic introgression contributed to the pre-agriculture adaptation of vitamin B1 metabolism in East Asia Xixian Ma, Shuhua Xu iScience 2022/12/22
Tracing Bai-Yue Ancestry in Aboriginal Li People on Hainan Island Hao Chen, Rong Lin, Yan Lu, Rui Zhang, Yang Gao, Yungang He, Shuhua Xu Molecular Biology and Evolution 2022/10/7
Genetic adaptation of skin pigmentation in highland Tibetans Zhaohui Yang, Caijuan Bai, Youwei Pu, Qinghong Kong, Yongbo Guo, Ouzhuluobu, Gengdeng, Xuyang Liu, Qi Zhao, Zhichao Qiu, Wangshan Zheng, Yaoxi He, Yihan Lin, Lian Deng, Chao Zhang, Shuhua Xu, Yi Peng, Kun Xiang, Xiaoming Zhang, Baimayangji, Cirenyangji, Chaoying Cui, Baimakangzhuo, Gonggalanzi, Bianba, Yongyue Pan, Jingxue Xin, Yong Wang, Shiming Liu, Liangbang Wang, Hengliang Guo, Zhenzhen Feng, Shaobo Wang, Hong Shi, Binghua Jiang, Tianyi Wu, Xuebin Qi, Bing Su PNAS 2022/9/26
Genetic evidence of tri-genealogy hypothesis on the origin of ethnic minorities in Yunnan Zhaoqing Yang, Hao Chen, Yan Lu, Yang Gao, Hao Sun, Jiucun Wang, Li Jin, Jiayou Chu, Shuhua Xu BMC Biology 2022/7/21
Lineage-specific positive selection on ACE2 contributes to the genetic susceptibility of COVID-19 Yuwen Pan, Panhong Liu, Fang Wang, Peng Wu, Fanjun Cheng, Xin Jin, Shuhua Xu National Science Review 2022/7/1
A protocol for applying a population-specific reference genome assembly to population genetics and medical studies Lian Deng, Bo Xie, Yimin Wang, Xiaoxi Zhang, Shuhua Xu STAR Protocol 2022/5/27
MultiWaverX: modeling latent sex-biased admixture history Rui Zhang, Xumin Ni, Kai Yuan, Yuwen Pan, Shuhua Xu Briefings in Bioinformatics 2022/5/23
Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0 Rui Zhang, Kai Yuan, Shuhua Xu STAR Protocols 2022/4/15
Mapping genomic loci implicates genes and synaptic biology in schizophrenia Vassily Trubetskoy#, Antonio F. Pardi as#, …, Shuhua Xu, …, Stephan Ripke*, JamesT.R. Walters*, Michael C. O’Donovan*, Schizophrenia Working Group of the Psychiatric Genomics Consortium Nature 2022/4/8
Improved NGS variant calling tool for the PRSS1–PRSS2 locus Haiyi Lou*, Bo Xie, Yimin Wang, Yang Gao, Shuhua Xu* Gut 2022/3/14
Haplotype-resolved de novo assembly of a Tujia genome suggests the necessity for high-quality population-specific genome references Haiyi Lou#*, Yang Gao#, Bo Xie#, Yimin Wang#, Haikuan Zhang, Miao Shi, Sen Ma, Xiaoxi Zhang, Chang Liu, Shuhua Xu* Cell Systems 2022/2/17
Genetic connections and convergent evolution of tropical indigenous peoples in Asia Lian Deng#, Yuwen Pan#, Yinan Wang, Hao Chen, Kai Yuan, Sihan Chen, Dongsheng Lu, Yan Lu, Siti Shuhada Mokhtar, Thuhairah Abdul Rahman, Boon-Peng Hoh, Shuhua Xu* Molecular Biology and Evolution 2022/2/3
Micro-co-evolution of Host Genetics with Gut Microbiome in Three Chinese Ethnic Groups Mingyue Cheng#, Xueling Ge#, Chaofang Zhong, Ruiqing Fu, Kang Ning*, Shuhua Xu* Journal of Genetics and Genomics 2021/11/20
The HuaBiao Project: Whole-Exome Sequencing of 5,000 Han Chinese Individuals Meng Hao, Weilin Pu, Yi Li, Shaoqing Wen, Chang Sun, Yanyun Ma, Hongxiang Zheng, Xingdong Chen, Jingze Tan, Guoqing Zhang, Menghan Zhang, Shuhua Xu, Yi Wang*, Hui Li*, Jiucun Wang*, Li Jin* Journal of Genetics and Genomics 2021/11/20
Refining models of archaic–modern human admixture in Eurasia with ArchaicSeeker 2.0 Kai Yuan#, Xumin Ni#, Chang Liu#, Yuwen Pan#, Lian Deng#, Rui Zhang#, Yang Gao, Xueling Ge, Jiaojiao Liu, Xixian Ma, Haiyi Lou, Taoyang Wu, Shuhua Xu* Nature Communications 2021/10/29
AdmixSim 2: a forward time simulator for modeling complex population admixture Rui Zhang#, Chang Liu#, Kai Yuan, Xumin Ni, Yuwen Pan, Shuhua Xu* BMC Bioinformatics 2021/10/18
Genomic diversity and post-admixture adaptation in the Uyghurs Yuwen Pan#, Chao Zhang#, Yan Lu#, Zhilin Ning, Dongsheng Lu, Yang Gao, Xiaohan Zhao, Yajun Yang, Yaqun Guan, Dolikun Mamatyusupu, Shuhua Xu* National Science Review 2021/9/11
Genetic origins and sex-biased admixture of the Huis Xixian Ma#, Wenjun Yang#, Yang Gao, Yuwen Pan, Yan Lu, Hao Chen, Dongsheng Lu, Shuhua Xu* Molecular Biology and Evolution 2021/8/23
The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans Xinjun Zhang, Kelsey E. Witt, Mayra M. Ba uelos, Amy Ko, Kai Yuan, Shuhua Xu, Rasmus Nielsen, Emilia Huerta-Sanchez* PNAS 2021/6/1
Reply to Lack of evidence for a role of PIWIL1 variants in human male infertility Lan-Tao Gou,Yang Gao,Jun-Yan Kang,Xin Wang,Hao Chen,Min-Min Hua,Zheng Li,Dangsheng Li, Xiang-Dong Fu,Hui-Juan Shi*, Shuhua Xu*, Mo-Fang Liu* Cell 2021/4/15
A Genome-wide Association Study of Facial Morphology Identifies Novel Genetic Loci in Han Chinese Yin Huang#, Dan Li#, Lu Qiao, Yu Liu, Qianqian Peng, Sijie Wu, Manfei Zhang, Yajun Yang, Jingze Tan, Shuhua Xu, Li Jin, Sijia Wang*, Kun Tang*, Stefan Grünewald* Journal of Genetics and Genomics 2021/3/20
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data Hao Chen#, Yan Lu#, Dongsheng Lu, Shuhua Xu* BMC Bioinformatics 2021/3/9
RET compound inheritance in Chinese patients with Hirschsprung disease: lack of penetrance from insufficient gene dysfunction Qian Jiang#, Yang Wang#, Yang Gao, Hui Wang, Zhen Zhang, Qi Li, Shuhua Xu, Wei Cai*, Long Li* Human Genetics 2021/1/12
Population Genomics of High-Altitude Adaptation Lian Deng, Shuhua Xu* Evolution of the Human Genome II (Book) 2021/1/1
Population genomics of East Asian ethnic groups Ziqing Pan, Shuhua Xu* Hereditas 2020/12/8
AdmixSim: A Forward-time Simulator for Various Complex Scenarios of Population Admixture Xiong Yang, Kai Yuan, Xumin Ni, Ying Zhou, Wei Guo, Shuhua Xu* Frontiers in Genetics 2020/12/3
Shared Signature of Recent Positive Selection on the TSBP1 – BTNL2 – HLA-DRA Genes in Five Native Populations from North Borneo Boon-Peng Hoh#, Xiaoxi Zhang#, Lian Deng#, Kai Yuan, Chee-Wei Yew, Woei-Yuh Saw, Mohammad Zahirul Hoque, Farhang Aghakhanian, Maude E Phipps, Yik-Ying Teo, Vijay Kumar Subbiah*, Shuhua Xu* Genome Biology and Evolution 2020/10/6
Triose Kinase Controls the Lipogenic Potential of Fructose and Dietary Tolerance Lei Liu, Tian Li, Yilie Liao, Yalong Wang, Yang Gao, Haikun Hu, Haipeng Huang, Fang Wu, Ye-Guang Chen, Shuhua Xu, Suneng Fu* Cell Metabolism 2020/10/6
Paternal gene pool of Malays in Southeast Asia and its applications for the early expansion of Austronesians Jin Sun#, Lanhai Wei#, Lingxiang Wang#, Yunzhi Huang, Shi Yan, Huizhen Cheng, Rick Twee-Hee Ong, Woei-Yuh Saw, Zhiquan Fan, Xiaohua Deng, Yan Lu, Chao Zhang, Shuhua Xu, Li Jin, Yik-Ying Teo*, Hui Li* American Journal of Human Biology 2020/8/26
Convergent adaptive evolution: how common, or how rare Chung-I Wu*, Guodong Wang, Shuhua Xu National Science Review 2020/5/12
Population genomics study of ethnic minorities in Xinjiang and Tibet Shuhua Xu Science (KEXUE) 2020/3/1
Trio deep-sequencing does not reveal unexpected off-target and on-target mutations in Cas9-edited rhesus monkeys Xin Luo#, Yaoxi He#, Chao Zhang#, Xiechao He#, Lanzhen Yan#, Min Li, Ting Hu, Yan Hu, Jin Jiang, Xiaoyu Meng, Weizhi Ji, Xudong Zhao, Ping Zheng*, Shuhua Xu*, Bing Su* Nature Communications 2019/12/4
Novel genetic loci affecting facial shape variation in humans Ziyi Xiong#, Gabriela Dankova#, Laurence J Howe, Myoung Keun Lee, Pirro G Hysi, Markus A de Jong, Gu Zhu, Kaustubh Adhikari, Dan Li, Yi Li, Bo Pan, Eleanor Feingold, Mary L Marazita, John R Shaffer, Kerrie McAloney, Shu-Hua Xu, Li Jin, Sijia Wang, Femke MS de Vrij, Bas Lendemeijer, Stephen Richmond, Alexei Zhurov, Sarah Lewis, Gemma C Sharp, Lavinia Paternoster, Holly Thompson, Rolando Gonzalez-Jose, Maria Catira Bortolini, Samuel Canizales-Quinteros, Carla Gallo, Giovanni Poletti, Gabriel Bedoya, Francisco Rothhammer, André G Uitterlinden, M Arfan Ikram, Eppo Wolvius, Steven A Kushner, Tamar EC Nijsten, Robert-Jan TS Palstra, Stefan Boehringer, Sarah E Medland, Kun Tang, Andrés Ruiz-Linares, Nicholas G Martin, Timothy D Spector, Evie Stergiakouli, Seth M Weinberg, Fan Liu*, Manfred Kayser*, on behalf of the International Visible Trait Genetics (VisiGen) Consortium eLife 2019/11/25
De novo assembly of a Tibetan genome and identification of novel structural variants associated with high altitude adaptation Ouzhuluobu#, Yaoxi He#, Haiyi Lou#, Chaoying Cui#, Lian Deng#, Yang Gao, Wangshan, Zheng, Yongbo Guo, Xiaoji Wang, Zhilin Ning, Jun Li, Bin Li, Caijuan Bai，Baimakangzhuo，Gonggalanzi, Dejiquzong, Bianba, Duojizhuoma, Shiming Liu, Tianyi Wu, Shuhua Xu*, Xuebin Qi*, Bing Su* National Science Review 2019/11/23
Comparative genetic architectures of schizophrenia in East Asian and European populations Max Lam#, Chia-Yen Chen#, Zhiqiang Li, Alicia R. Martin, Julien Bryois, Xixian Ma, Helena Gaspar, Masashi Ikeda, Beben Benyamin, Brielin C. Brown, Ruize Liu, Wei Zhou, Lili Guan, Yoichiro Kamatani, Sung-Wan Kim, Michiaki Kubo, Agung Kusumawardhani, Chih-Min Liu, Hong Ma, Sathish Periyasamy, Atsushi Takahashi, Zhida Xu, Hao Yu, Feng Zhu, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Indonesia Schizophrenia Consortium, Genetic REsearch on schizophreniA neTwork-China and Netherland (GREAT-CN), Wei J. Chen, Stephen Faraone, Stephen J. Glatt, Lin He, Steven E. Hyman6, Hai-Gwo Hwu, Steven A. McCarroll, Benjamin M. Neale, Pamela Sklar, Dieter B. Wildenauer, Xin Yu, Dai Zhang, Bryan J. Mowry, Jimmy Lee, Peter Holmans, Shuhua Xu, Patrick F. Sullivan, Stephan Ripke, Michael C. O’Donovan, Mark J. Daly, Shengying Qin, Pak Sham, Nakao Iwata, Kyung S. Hong, Sibylle G. Schwab, Weihua Yue*, Ming Tsuang*, Jianjun Liu*, Xiancang Ma*, René S. Kahn*, Yongyong Shi*, Hailiang Huang* Nature Genetics 2019/11/18
Analysis of Five Deep-sequenced Trio-genomes of the Peninsular Malaysia Orang Asli and North Borneo Populations Lian Deng#, Haiyi Lou#, Xiaoxi Zhang#, Thiruvahindrapuram Bhooma, Dongsheng Lu, Christian R Marshall, Chang Liu, Bo Xie, Wanxing Xu, Lai-Ping Wong, Chee-Wei Yew, Aghakhanian Farhang, Rick Twee-Hee Ong, Mohammad Zahirul Hoque, Abdul Rahman Thuhairah, Bhak Jong, Maude E Phipps, Stephen W Scherer, Yik-Ying Teo, Subbiah Vijay Kumar*, Boon-Peng Hoh*, Shuhua Xu* BMC Genomics 2019/11/12
Database Resources of the National Genomics Data Center in 2020 National Genomics Data Center Members and Partners Nucleic Acids Research 2019/11/8
PGG.SNV: Understanding the evolutionary and medical implications of human single nucleotide variations in diverse populations Chao Zhang#, Yang Gao#, Zhilin Ning#, Yan Lu#, Xiaoxi Zhang, Jiaojiao Liu, Bo Xie, Zhe Xue, Xiaoji Wang, Kai Yuan, Xueling Ge, Yuwen Pan, Chang Liu, Lei Tian, Yuchen Wang, Dongsheng Lu, Boon-Peng Hoh, Shuhua Xu* Genome Biology 2019/10/22
PGG.Han: The Han Chinese Genome Database and Analysis Platform Yang Gao#, Chao Zhang#, Liyun Yuan#, YunChao Ling, Xiaoji Wang, Chang Liu, Yuwen Pan, Xiaoxi Zhang, Xixian Ma, Yuchen Wang, Yan Lu, Kai Yuan, Wei Ye, Jiaqiang Qian, Huidan Chang, Ruifang Cao, Xiao Yang, Ling Ma, Yuanhu Ju, Long Dai, Yuanyuan Tang, The Han100K Initiative, Guoqing Zhang, Shuhua Xu* Nucleic Acids Research 2019/10/4
Prioritizing natural selection signals from the deep-sequencing genomic data suggests multi-variant adaptation in Tibetan highlanders Lian Deng#, Chao Zhang#, Kai Yuan#, Yang Gao#, Yuwen Pan,Xueling Ge, Yaoxi He, Yuan Yuan, Yan Lu, Xiaoxi Zhang, Hao Chen, Haiyi Lou, Xiaoji Wang, Dongsheng Lu, Jiaojiao Liu,Lei Tian, Qidi Feng, Asifullah Khan, Yajun Yang, Zi-Bing Jin,Jian Yang, Fan Lu, Jia Qu, Longli Kang, Bing Su, Shuhua Xu* National Science Review 2019/8/7
AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals Qidi Feng#, Dongsheng Lu#, Shuhua Xu* Genomics Proteomics Bioinformatics 2018/11/22
Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans Sijie Wu#, Manfei Zhang#, Xinzhou Yang#, Fuduan Peng, Juan Zhang, Jingze Tan, Yajun Yang, Lina Wang, Yanan Hu, Qianqian Peng, Jinxi Li, Yu Liu, Yaqun Guan, Chen Chen, Merel A. Hamer, Tamar Nijsten, Changqing Zeng, Kaustubh Adhikari, Carla Gallo, Giovanni Poletti, Lavinia Schuler-Faccini, Maria-Cátira Bortolini, Samuel Canizales-Quinteros, Francisco Rothhammer, Gabriel Bedoya, Rolando González-José, Hui Li, Jean Krutmann, Fan Liu, Manfred Kayser, Andres Ruiz-Linares, Kun Tang, Shuhua Xu, Liang Zhang*, Li Jin*, Sijia Wang* PLoS Genetics 2018/9/24
MultiWaver 2.0: modeling discrete and continuous gene flow to reconstruct complex population admixtures Xumin Ni, Kai Yuan, Chang Liu, Qidi Feng, Lei Tian, Zhiming Ma*, Shuhua Xu* European Journal of Human Genetics 2018/9/11
Towards broadening Forensic DNA Phenotyping beyond pigmentation: Improving the prediction of head hair shape from DNA Ewelina Po piech, Yan Chen, Magdalena Kukla-Bartoszek, Krystal Breslin, Anastasia Aliferi, Jeppe D. Andersen, David Ballard, Lakshmi Chaitanya, Ana Freire-Aradas, Kristiaan J.van der Gaag, Lorena Girón-Santamaría, Theresa E. Gross, Mario Gysi, Gabriela Huber, Ana Mosquera-Miguel, Charanya Muralidharan, Ma gorzata Skowron, ángel Carracedo, Cordula Haas, Niels Morling, Walther Parson, Christopher Phillips, Peter M. Schneider, Titia Sijen, Denise Syndercombe-Court, Marielle Vennemann, Sijie Wu, Shuhua Xu, Li Jin, Sijia Wang, Ghu Zhu, Nick G. Martin, Sarah E. Medland, EUROFORGEN NoE Consortium, Wojciech Branicki, Susan Walsh, Fan Liu, Manfred Kayser* Forensic Science International: Genetics 2018/8/29
Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction Lu Qiao, Yajun Yang, Pengcheng Fu, Sile Hu, Hang Zhou, Shouneng Peng, Jingze Tan, Yan Lu, Haiyi Lou, Dongsheng Lu, Sijie Wu, Jing Guo, Li Jin, Yaqun Guan, Sijia Wang*, Shuhua Xu*, Kun Tang* Journal of Genetics and Genomics 2018/8/16
Reconstruction of Y-chromosome phylogeny reveals two neolithic expansions of Tibeto-Burman populations Lingxiang Wang, Yan Lu, Chao Zhang, Lanhai Wei, Shi Yan, Yunzhi Huang, Chuanchao Wang, Swapan Mallick, Shaoqing Wen, Li Jin, Shuhua Xu*, Hui Li Molecular Genetics and Genomics 2018/7/19
Paternal origin of Paleo-Indians in Siberia: insights from Y-chromosome sequences Lan-Hai Wei, Ling-Xiang Wang, Shao-Qing Wen, Shi Yan, Rebekah Canada, Vladimir Gurianov, Yun-Zhi Huang, Swapan Mallick, Alessandro Biondo, Amy O’Leary, Chuan-Chao Wang, Yan Lu, Chao Zhang, Li Jin, Shuhua Xu*, Hui Li* European Journal of Human Genetics 2018/7/10
Genetic Structure, Divergence and Admixture of Han Chinese, Japanese and Korean Populations Yuchen Wang, Dongsheng Lu, Yeun-Jun Chung, Shuhua Xu* Hereditas 2018/4/6
Commentary: A Mechanism of Nitric Oxide Regulation in High-altitude Tibetans Shuhua Xu* National Science Review 2018/3/28
Genetic relatedness of indigenous ethnic groups in northern Borneo to neighboring populations from Southeast Asia, as inferred from genome-wide SNP data Chee Wei Yew, Mohd Zahirul Hoque, Jacqueline Pugh-Kitingan, Alexander Minsong, Christopher Lok Yung Voo, Julian Ransangan, Sophia Tiek Ying Lau, Xu Wang, Woei Yuh Saw, Rick Twee-Hee Ong, Yik-Ying Teo, Shuhua Xu, Boon-Peng Hoh, Maude E. Phipps, S. Vijay Kumar* Annals of Human Genetics 2018/3/9
A genome-wide characterization of copy number variations in native populations of Peninsular Malaysia Ruiqing Fu, Siti Shuhada Mokhtar, Maude Elvira Phipps, Boon-Peng Hoh, Shuhua Xu* European Journal of Human Genetics 2018/2/23
Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia Chee-Wei Yew, Dongsheng Lu, Lian Deng, Lai-Ping Wong, Rick Twee-Hee Ong, Yan Lu, Xiaoji Wang, Yushimah Yunus, Farhang Aghakhanian, Siti Shuhada Mokhtar, Mohammad Zahirul Hoque, Christopher Lok-Yung Voo, Thuhairah Abdul Rahman, Jong Bhak, Maude E. Phipps, Shuhua Xu, Yik-Ying Teo, Subbiah Vijay Kumar*, Boon-Peng Hoh* Human Genetics 2018/1/30
Inference of multiple-wave admixtures by length distribution of ancestral tracks Xumin Ni, Kai Yuan, Xiong Yang, Qidi Feng, Wei Guo, Zhiming Ma*, Shuhua Xu* Heredity 2018/1/23
Genome-wide comparison of allele-specific gene expression between African and European populations Lei Tian, Asifullah Khan, Zhilin Ning, Kai Yuan, Chao Zhang, Haiyi Lou, Yuan Yuan, Shuhua Xu* Human Molecular Genetics 2018/1/15
Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair Fan Liu#,*, Yan Chen#, Gu Zhu, Pirro G. Hysi, Sijie Wu, Kaustubh Adhikari, Krystal Breslin, Ewelina Po piech, Merel A. Hamer, Fuduan Peng, Charanya Muralidharan, Victor Acuna-Alonzo, Samuel Canizales-Quinteros, Gabriel Bedoya, Carla Gallo, Giovanni Poletti, Francisco Rothhammer, Maria Catira Bortolini, Rolando Gonzalez-Jose, Changqing Zeng, Shuhua Xu, Li Jin, André G. Uitterlinden, M. Arfan Ikram, Cornelia M. van Duijn, Tamar Nijsten, Susan Walsh, Wojciech Branicki, Sijia Wang, Andrés Ruiz-Linares, Timothy D. Spector, Nicholas G. Martin, Sarah E. Medland*, Manfred Kayser* Human Molecular Genetics 2017/12/6
A missense point mutation in COL10A1 identified with whole-genome deep seqencing in a 7-generation Pakistan dwarf family Chao Zhang#, Jiaojiao Liu#, Furhan Iqbal, Yan Lu, Saima Mustafa, Firdous Bukhari, Haiyi Lou, Ruiqing Fu, Zhendong Wu, Xiong Yang, Ihtisham Bukhari, Muhammad Aslam, Shuhua Xu* Heredity 2017/11/10
PGG.Population: a database for understanding the genomic diversity and genetic ancestry of human populations Chao Zhang#, Yang Gao#, Jiaojiao Liu, Zhe Xue, Yan Lu, Lian Deng, Lei Tian, Qidi Feng, Shuhua Xu* Nucleic Acids Research 2017/11/3
Large-scale genome-wide scans do not support petaloid toenail as a Mendelian trait Manfei Zhang, Sijie Wu, Juan Zhang, Yajun Yang, Jingze Tan, Haijuan Guan, Yu Liu, Kun Tang, Jean Krutmann, Shuhua Xu, Li Jin, Yaqun Guan*, Hui Li*, Sijia Wang* Journal of Genetics and Genomics 2017/10/14
A metagenomic approach to dissect the genetic composition of enterotypes in Han Chinese and two Muslim groups Jing Li#*, Ruiqing Fu#, Yajun Yang, Hans-Peter Horz, Yaqun Guan, Yan Lu, Haiyi Lou, Lei Tian, Shijie Zheng, Hongjiao Liu, Meng Shi, Kun Tang, Sijia Wang, Shuhua Xu* Systematic and Applied Microbiology 2017/9/13
Homozygous p.Ser267Phe in SLC10A1 is associated with a new type of hypercholanemia and implications for personalized medicine Ruihong Liu#, Chuming Chen#, Xuefeng Xia#, Qijun Liao#, Qiong Wang, Paul J. Newcombe, Shuhua Xu, Minghui Chen, Yue Ding, Xiaoying Li, Zhihong Liao, Fucheng Li, Minlian Du, Huaiqiu Huang, Ruimin Dong, Weiping Deng, Ye Wang, Binghui Zeng, Qihao Pan, Danhua Jiang, Hao Zeng, Pak Sham, Yingnan Cao, Patrick H. Maxwell, Zhi-liang Gao*, Liang Peng*, Yiming Wang* Scientific Reports 2017/8/23
Models, methods and tools for ancestry inference and admixture analysis Kai Yuan#, Ying Zhou#, Xumin Ni#, Yuchen Wang, Chang Liu, Shuhua Xu* Quantitative Biology 2017/8/19
Assessing genome-wide copy number variation in the Han Chinese population Jianqi Lu#, Haiyi Lou#, Ruiqing Fu#, Dongsheng Lu#, Feng Zhang#, Zhendong Wu, Xi Zhang, Changhua Li, Baijun Fang, Fangfang Pu, Jingning Wei, Qian Wei, Chao Zhang, Xiaoji Wang, Yan lu, Shi Yan, Yajun Yang, Li Jin*, Shuhua Xu* Journal of Medical Genetics 2017/7/13
CNVbase: Batch identification of novel and rare copy number variations based on multi-ethnic population data Cheng Zhang, Jianqi Lu, Haiyi Lou, Renqian Du, Shuhua Xu, Yiping Shen, Feng Zhang*, Li Jin* Journal of Genetics and Genomics 2017/7/11
Adaptation of human skin color in various populations Lian Deng, Shuhua Xu* Hereditas 2017/6/15
Differentiated demographic histories and local adaptations between Sherpas and Tibetans Chao Zhang#, Yan Lu#, Qidi Feng#, Xiaoji Wang#, Haiyi Lou, Jiaojiao Liu, Zhilin Ning, Kai Yuan, Yuchen Wang, Ying Zhou, Lian Deng, Lijun Liu, Yajun Yang, Shilin Li, Lifeng Ma, Zhiying Zhang, Li Jin, Bing Su, Longli Kang, Shuhua Xu* Genome Biology 2017/6/15
Genetic history of Xinjiang’s Uyghurs suggests Bronze Age multiple-way contacts in Eurasia Qidi Feng#, Yan Lu#, Xumin Ni#, Kai Yuan#, Yajun Yang#, Xiong Yang, Chang Liu, Haiyi Lou, Zhilin Ning, Yuchen Wang, Dongsheng Lu, Chao Zhang, Ying Zhou, Meng Shi, Lei Tian, Xiaoji Wang, Xi Zhang, Jing Li, Asifullah Khan, Yaqun Guan, Kun Tang*, Sijia Wang*, Shuhua Xu* Molecular Biology and Evolution 2017/6/8
GCH1 plays a role in the high-altitude adaptation of Tibetans Yong-Bo Guo#, Yao-Xi He#, Chao-Ying Cui#, Ouzhuluobu, Baimakangzhuo, Duojizhuoma, Dejiquzong, Bianba, Yi Peng, Cai-juan Bai, Gonggalanzi, Yong-Yue Pan, Qula, Kangmin, Cirenyangji, Baimayangji, Wei Guo, Yangla, Hui Zhang, Xiao-Ming Zhang, Wang-Shan Zheng, Shu-Hua Xu, Hua Chen, Sheng-Guo Zhao, Yuan Cai, Shi-Ming Liu, Tian-Yi Wu, Xue-Bin Qi*, Bing Su* Zoological Research 2017/4/27
EP300 contributes to high-altitude adaptation in Tibetans by regulating nitric oxide production Wang-Shan Zheng#, Yao-Xi He#, Chao-Ying Cui#, Ouzhuluobu, Dejiquzong, Yi Peng, Cai-Juan Bai, Duojizhuoma, Gonggalanzi, Bianba, Baimakangzhuo, Yong-Yue Pan, Qula, Kangmin, Cirenyangji, Baimayangji, Wei Guo, Yangla, Hui Zhang, Xiao-Ming Zhang, Yong-Bo Guo, Shu-Hua Xu, Hua Chen, Sheng-Guo Zhao, Yuan Cai, Shi-Ming Liu, Tian-Yi Wu, Xue-Bin Qi*, Bing Su* Zoological Research 2017/4/27
Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia Lanhai Wei#, Shi Yan#, Yik-Ying Teo, Yunzhi Huang, Lingxiang Wang, Ge Yu, Woei-Yuh Saw, Rick Twee-Hee Ong, Yan Lu, Chao Zhang, Shuhua Xu, Li Jin, Hui Li* PLoS One 2017/4/5
Modeling Continuous Admixture Using Admixture-Induced Linkage Disequilibrium Ying Zhou, Hongxiang Qiu, Shuhua Xu* Scientific Reports 2017/2/23
Inference of multiple-wave population admixture by modeling decay of linkage disequilibrium with polynomial functions Ying Zhou, Hongxiang Qiu, Shuhua Xu* Heredity 2017/2/15
Down-regulation of EPAS1 Transcription and Genetic Adaptation of Tibetans to High-altitude Hypoxia Yi Peng, Chaoying Cui, Yaoxi He, Ouzhuluobu, Hui Zhang, Deying Yang, Qu Zhang, Bianbazhuoma, Lixin Yang, Yibo He, Kun Xiang, Xiaoming Zhang, Sushil Bhandari, Peng Shi, Yangla, Dejiquzong, Baimakangzhuo, Duojizhuoma, Yongyue Pan, Cirenyangji, Baimayangji, Gonggalanzi, Caijuan Bai, Bianba, Basang, Ciwangsangbu, Shuhua Xu, Hua Chen, Shimin Liu, Tianyi Wu*, Xuebin Qi*, Bing Su* Molecular Biology and Evolution 2017/1/18
Characterising private and shared signatures of positive selection in 37 Asian populations Xuanyao Liu, Dongsheng Lu, Woei-Yuh Saw, Philip J Shaw, Pongsakorn Wangkumhang, Chumpol Ngamphiw, Suthat Fucharoen, Worachart Lert-itthiporn, Kwanrutai Chin-inmanu, Tran Nguyen Bich Chau, Katie Anders, Anuradhani Kasturiratne, H Janaka de Silva, Tomohiro Katsuya, Ryosuke Kimura, Toru Nabika, Takayoshi Ohkubo, Yasuharu Tabara, Fumihiko Takeuchi, Ken Yamamoto, Mitsuhiro Yokota, Dolikun Mamatyusupu, Wenjun Yang, Yeun-Jun Chung, Li Jin, Boon-Peng Hoh, Ananda R Wickremasinghe, RickTwee-Hee Ong, Chiea-Chuen Khor, Sarah J Dunstan, Cameron Simmons, Sissades Tongsima, Prapat Suriyaphol, Norihiro Kato, Shuhua Xu, Yik-Ying Teo* European Journal of Human Genetics 2017/1/18
Precision Medicine: What Challenges Are We Facing Yu Xue, Eric-Wubbo Lameijer, Kai Ye, Kunlin Zhang, Suhua Chang, Xiaoyue Wang, Jianmin Wu, Ge Gao, Fangqing Zhao, Jian Li, Chunsheng Han, Shuhua Xu, Jingfa Xiao, Xuerui Yang, Xiaomin Ying, Xuegong Zhang, Wei-Hua Chen, Yun Liu, Zhang Zhang, Kun Huang, Jun Yu* Genomics, Proteomics & Bioinformatics 2016/10/13
Ancestral Origins and Genetic History of Tibetan Highlanders Dongsheng Lu, Haiyi Lou, Kai Yuan, Xiaoji Wang, Yuchen Wang, Chao Zhang, Yan Lu, Xiong Yang, Lian Deng, Ying Zhou, Qidi Feng, Ya Hu, Qiliang Ding, Yajun Yang, Shilin Li, Li Jin, Yaqun Guan, Bing Su, Longli Kang, Shuhua Xu* American Journal of Human Genetics 2016/9/1
Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations Sijie Wu, Jingze Tan, Yajun Yang, Qianqian Peng, Manfei Zhang, Jinxi Li, Dongsheng Lu, Yu Liu, Haiyi Lou, Qidi Feng, Yan Lu, Yaqun Guan, Zhaoxia Zhang, Yi Jiao, Pardis Sabeti, Jean Krutmann, Kun Tang, Li Jin*, Shuhua Xu*, Sijia Wang* Human Genetics 2016/8/3
Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus Dan Chen*, Stefan Enroth, Han Liu, Yang Sun, Huibo Wang, Min Yu, Lian Deng, Shuhua Xu, Ulf Gyllensten Oncotarget 2016/6/7
Comparative Analysis of Type 2 Diabetes Susceptibility Candidate Genes Diversity in World Wide Populations Xian Gong, Chao Zhang, Aisa Yiliyasi, Ying Shi, Xuewei Yang, Aosiman Nuersimanguli, Yaqun Guan*, Shuhua Xu* Hereditas (Beijing) 2016/6/1
Ancestry variation and footprints of natural selection along the genome in Latin American populations Lian Deng, Andres Ruiz-Linares, Shuhua Xu*, Sijia Wang* Scientific Reports 2016/2/18
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration Xumin Ni, Wei Guo, Kai Yuan, Xiong Yang, Zhiming Ma, Shuhua Xu, Shihua Zhang* IEEE/ACM Transactions on Computational Biology and Bioinformatics 2016/2/1
Length Distribution of Ancestral Tracks under a General Admixture Model and Its Applications in Population History Inference Xumin Ni, Xiong Yang, Wei Guo, Kai Yuan, Ying Zhou, Zhiming Ma*, Shuhua Xu* Scientific Reports 2016/1/28
A genetic mechanism for convergent skin lightening during recent human evolution Zhaohui Yang*, Hua Zhong*, Jing Chen*, Xiaoming Zhang*, Hui Zhang, Xin Luo, Shuhua Xu, Hua Chen, Dongsheng Lu, Yinglun Han, Jinkun Li, Lijie Fu, Xuebin Qi, Yi Peng, Kun Xiang, Qiang Lin, Yan Guo, Ming Li, Xiangyu Cao, Yanfeng Zhang, Shiyu Liao, Yingmei Peng, Lin Zhang, Xiaosen Guo, Shanshan Dong, Fan Liang, Jun Wang, Andrew Willden, Hong Seang Aun, Bun Serey, Tuot Sovannary, Long Bunnath, Ham Samnom, Graeme Mardon, Qingwei Li, Anming Meng, Hong Shi, Bing Su Molecular Biology and Evolution 2016/1/6
Genetic diversity and natural selection footprints of the glycine amidinotransferase gene in various human populations Asifullah Khan, Lei Tian, Chao Zhang, Kai Yuan, Shuhua Xu* Scientific Reports 2016/1/5
EDARV370A associated facial characteristics in Uyghur population revealing further pleiotropic effects Qianqian Peng, Jinxi Li, Jingze Tan, Yajun Yang, Manfei Zhang, Sijie Wu, Yu Liu, Juan Zhang, Pengfei Qin, Yaqun Guan, Yi Jiao, Zhaoxia Zhang, Pardis C Sabeti, Kun Tang, Shuhua Xu, Li Jin, Sijia Wang* Human Genetics 2015/11/24
A probabilistic method for testing and estimating selection differences between populations Yungang He*, Minxian Wang, Xin Huang, Ran Li, Hongyang Xu, Shuhua Xu, Li Jin Genome Research 2015/10/13
Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites Xia Liu, Bo Zhao, Hua-Jun Zheng, Yan Hu, Gang Lu, Chang-Qing Yang, Jie-Dan Chen, Jun-Jian Chen, Dian-Yang Chen, Liang Zhang, Yan Zhou, Ling-Jian Wang, Wang-Zhen Guo, Yu-Lin Bai, Ju-Xin Ruan, Xiao-Xia Shangguan, Ying-Bo Mao, Chun-Min Shan, Jian-Ping Jiang, Yong-Qiang Zhu, Lei Jin, Hui Kang, Shu-Ting Chen, Xu-Lin He, Rui Wang, Yue-Zhu Wang, Jie Chen, Li-Jun Wang, Shu-Ting Yu, Bi-Yun Wang, Jia Wei, Si-Chao Song, Xin-Yan Lu, Zheng-Chao Gao, Wen-Yi Gu, Xiao Deng, Dan Ma, Sen Wang, Wen-Hua Liang, Lei Fang, Cai-Ping Cai, Xie-Fei Zhu, Bao-Liang Zhou, Z. Jeffrey Chen, Shu-Hua Xu, Yu-Gao Zhang*, Sheng-Yue Wang, Tian-Zhen Zhang*, Guo-Ping Zhao, Xiao-Ya Chen* Scientific Reports 2015/9/30
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