姜涛 - 哈尔滨工业大学

个人简介

姜涛，哈工大计算学部副教授、硕士生导师，哈工大生物信息技术研究院院长助理，主要研究方向为基因组大数据分析算法，在Genome Biology、Bioinformatics等生物信息学顶级期刊发表学术论文近二十篇。研发多个大规模基因组数据分析算法，被基因组科学与生物信息学顶级期刊Nature系列期刊发表的综述论文评价为当前基因组数据分析的代表性算法，并被基因组测序仪巨头Oxford Nanopore Technologies写入官方白皮书，推荐其全球用户使用。主持国家自然科学基金青年项目一项、中国博士后科学基金面上项目一项、黑龙江省博士后基金面上项目一项。目前担任中国计算机学会生物信息学专委会通讯委员，是中科院一区生物信息学顶级期刊《Briefings in Bioinformatics》、《Bioinformatics》审稿人，《Frontiers in Genetics》、《Frontiers in Bioengineering and Biotechnology》、《Frontiers in Plant Science》等期刊的评论编辑。教育经历 2014.9—2019.10 哈尔滨工业大学计算机应用技术博士（硕博连读） 2010.9—2014.7 哈尔滨工业大学生物信息技术学士工作经历 2023.4—至今哈尔滨工业大学生物信息技术研究院院长助理 2023.1—至今哈尔滨工业大学计算学部副教授 2022.3—至今黑龙江省基因大数据省级培育协同创新中心中心助理 2022.3—至今黑龙江省生物医学信息与系统工程技术研究中心中心助理 2021.6—至今哈尔滨工业大学计算学部硕士生导师 2019.12—至今生物大数据教育部重点实验室实验室助理 2019.10—2022.12 哈尔滨工业大学计算学部讲师/助理教授 2019.10—至今哈尔滨工业大学师资博士后

研究领域

基于人工智能技术的基因组大数据解析与挖掘面向生物组学数据的深度学习技术研发高性能多模态数据分析工作流研发

近期论文

查看导师新发文章（温馨提示：请注意重名现象，建议点开原文通过作者单位确认）

Tao Jiang, Yongzhuang Liu, et al. Long-read-based human genomic structural variation detection with cuteSV. Genome Biol 21, 189 (2020). （中科院一区， IF=17.906） Tao Jiang, Bo Liu, Junyi Li, Yadong Wang, rMETL: sensitive mobile element insertion detection with long read realignment, Bioinformatics, Volume 35, Issue 18, 15 September 2019, Pages 3484–3486.（中科院一区， IF=6.931） Tao Jiang, Shiqi Liu, Shuqi Cao, Yadong Liu, Zhe Cui, Yadong Wang, Hongzhe Guo. Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation. BMC Bioinformatics 22 (1), 2021, 1-17. (中科院二区， IF=3.307） Tao Jiang, Yilei Fu, Bo Liu and Yadong Wang, "Long-Read Based Novel Sequence Insertion Detection With rCANID," in IEEE Transactions on NanoBioscience, vol. 18, no. 3, pp. 343-352, July 2019. （中科院三区，IF=3.206） Tao Jiang, Shiqi Liu, Shuqi Cao, Yadong Wang. (2022). Structural Variant Detection from Long-Read Sequencing Data with cuteSV. In: Ng, C., Piscuoglio, S. (eds) Variant Calling. Methods in Molecular Biology, vol 2493. Humana, New York, NY. (Springer著作) Yadong Liu, Tao Jiang (并列一作), Junhao Su, Bo Liu, Tianyi Zang, Yadong Wang, SKSV: ultrafast structural variation detection from circular consensus sequencing reads, Bioinformatics, 2021, btab341. （中科院一区， IF=6.931） Bo Liu, Tao Jiang (并列一作), S M Yiu, Junyi Li, Yadong Wang, rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering, Bioinformatics, Volume 33, Issue 17, 01 September 2017, Pages 2750–2752. （中科院一区， IF=6.931） Gaoyang Li, Tao Jiang (并列一作), Junyi Li, Yadong Wang. PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations. Frontiers in Genetics, 2021, 1486. （中科院二区， IF=4.772） Yadong Liu, Tao Jiang (并列一作), Yan Gao, Bo Liu, Tianyi Zang, Yadong Wang. Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy. Frontiers in Cell and Developmental Biology, 2021, 2139. （中科院二区， IF=6.684） Yilei Fu, Tao Jiang (并列一作), Bo Liu and Yadong Wang, "rCANID: read Clustering and Assembly-based Novel Insertion Detection tool," 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018, pp. 219-226, doi:10.1109/BIBM.2018.8621105. （CCF B类会议） Cui Zhe, Cui Ya, Gao Yan, Jiang Tao, Zang Tianyi, Wang Yadong. Enhancement and Imputation of Peak Signal Enables Accurate Cell-Type Classification in scATAC-seq. Frontiers in Genetics. 12, 345, 2021. ISSN=1664-8021.（中科院二区，IF=4.772） Zhe Cui, Bo Liu, Liran Juan, Tianyi Zang, Tao Jiang, and Yadong Wang, "Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq," 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2020, pp. 412-416. （CCF B类会议） Hongzhe Guo., Z. Yang, Tao Jiang. et al. Evaluation of classification in single cell atac-seq data with machine learning methods. BMC Bioinformatics 23 (Suppl 5), 249 (2022). (中科院二区， IF=3.307） Yadong Liu, Zhongyu Liu, Tao Jiang（通讯）, et al. Comparison of the Nanopore and PacBio sequencing technologies for DNA 5-methylcytosine detection. BIBM2022.（CCF B类会议） P Meng, G Wang, H Guo, T Jiang（通讯）, Identifying cancer driver genes using a two-stage random walk with restart on a gene interaction network. Computers in Biology and Medicine 158, 106810. （中科院二区，IF=7.7） Yadong Liu, Zhenhao Lu, Zhongyu Liu, Hongzhe Guo, Yadong Wang, and Tao Jiang（通讯）, Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data. BIBM2023.（CCF B类会议） Anqi Zhang, Tangchao Kong, Baiquan Sun, Shizheng Qiu, Jiahe Guo, Shuyong Ruan, Yu Guo, Jirui Guo, Zhishuai Zhang, Yue Liu, Zheng Hu, Tao Jiang, Yadong Liu, Shuqi Cao, Shi Sun, Tingting Wu, Huilong Hong, Bingjun Jiang, Maoxiang Yang, Xiangyu Yao, Yadong Wang, A telomere-to-telomere genome assembly of Zhonghuang 13, a widely-grown soybean variety from the original center of Glycine max. The Crop Journal. （中科院一区，IF=4.6）曹舒淇，刘诗琦，姜涛（通讯），群体基因组结构变异检测工作流，生物信息学，Vol 19（4），2021，DOI: 10.12113/202106001

学术兼职

国家地区科学基金项目评议专家国家自然基金青年项目评议专家教育部学位中心学位论文通讯评议专家中国计算机学会（CCF）生物信息学专委会通讯委员国际生物信息学和生物医学会议（BIBM）程序委员中国生物工程学会计算生物学与生物信息学专委委员 IEEE医学与生物学工程会议（EMBC）审稿人 Frontiers in Genetics 评论编辑 Frontiers in Bioengineering and Biotechnology 评论编辑 Frontiers in Plant Science 评论编辑 ASHG HGG Advances 审稿人 Briefings in Bioinformatics 审稿人 Bioinformatics 审稿人 Molecular Biology Reports 审稿人