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Y. Liu, X. Wu, Y. Wang, "An integrated approach for copy number variation discovery in parent–offspring trios", Brief Bioinform, Jun 19 2021.
Y. Liu, Y. Huang, G. Wang, and Y. Wang, "A deep learning approach for filtering structural variants in short read sequencing data," Brief Bioinform, Dec 30 2020.
Y. Liu, J. Liu, and Y. Wang, "Joint detection of germline and somatic copy number events in matched tumor-normal sample pairs," Bioinformatics, vol. 35, pp. 4955-4961, Dec 1 2019.
Y. Liu, J. Liu, J. Lu, J. Peng, L. Juan, X. Zhu, et al., "Joint detection of copy number variations in parent-offspring trios," Bioinformatics, vol. 32, pp. 1130-7, Apr 15 2016.
Y. Liu, B. Li, R. Tan, X. Zhu, and Y. Wang, "A gradient-boosting approach for filtering de novo mutations in parent-offspring trios," Bioinformatics, vol. 30, pp. 1830-6, Jul 1 2014.
Y. Liu, J. Liu, and Y. Wang, "Filtering de novo indels in parent-offspring trios," BMC Bioinformatics, vol. 21, p. 547, 2020/12/16 2020.
Y. Liu, J. Liu, and Y. Wang, "DNMFilter_Indel: Filtering de novo Indels in Parent-Offspring Trios," in 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2019, pp. 1758-1761.
T. Jiang, Y. Liu, Y. Jiang, J. Li, Y. Gao, Z. Cui, et al., "Long-read-based human genomic structural variation detection with cuteSV," Genome Biol, vol. 21, p. 189, Aug 3 2020.
Y. Gao, Y. Liu, Y. Ma, B. Liu, Y. Wang, and Y. Xing, "abPOA: an SIMD-based C library for fast partial order alignment using adaptive band," Bioinformatics, Nov 9 2020.
L. Juan, Y. Liu, Y. Wang, M. Teng, T. Zang, and Y. Wang, "Family genome browser: visualizing genomes with pedigree information," Bioinformatics, vol. 31, pp. 2262-8, Jul 15 2015.
J. Liu, Q. Liu, L. Zhang, S. Su, and Y. Liu, "Enabling Massive XML-Based Biological Data Management in HBase," IEEE/ACM Trans Comput Biol Bioinform, vol. 17, pp. 1994-2004, Nov-Dec 2020.
T. Wang, Q. Peng, B. Liu, Y. Liu, and Y. Wang, "Disease Module Identification Based on Representation Learning of Complex Networks Integrated From GWAS, eQTL Summaries, and Human Interactome," Front Bioeng Biotechnol, vol. 8, p. 418, 2020.
T. Wang, Q. Peng, B. Liu, X. Liu, Y. Liu, J. Peng, et al., "eQTLMAPT: Fast and Accurate eQTL Mediation Analysis With Efficient Permutation Testing Approaches," Front Genet, vol. 10, p. 1309, 2019.
Z. Wang, Y. Liu, and Y. Wang, "MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips," Front Genet, vol. 11, p. 538492, 2020.
Q. Wei, X. Zhan, X. Zhong, Y. Liu, Y. Han, W. Chen, et al., "A Bayesian framework for de novo mutation calling in parents-offspring trios," Bioinformatics, vol. 31, pp. 1375-81, May 1 2015.
R. Tan, Y. Wang, S. E. Kleinstein, Y. Liu, X. Zhu, H. Guo, et al., "An evaluation of copy number variation detection tools from whole-exome sequencing data," Hum Mutat, vol. 35, pp. 899-907, Jul 2014.
J. Peng, H. Li, Y. Liu, L. Juan, Q. Jiang, Y. Wang, et al., "InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology," BMC Genomics, vol. 17 Suppl 5, p. 530, Aug 31 2016.
L. Cheng, J. Li, Y. Hu, Y. Jiang, Y. Liu, Y. Chu, et al., "Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms," IEEE/ACM Trans Comput Biol Bioinform, vol. 12, pp. 1219-26, Nov-Dec 2015.
L. Juan, M. Teng, T. Zang, Y. Hao, Z. Wang, C. Yan, et al., "The personal genome browser: visualizing functions of genetic variants," Nucleic Acids Res, vol. 42, pp. W192-7, Jul 2014.