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Hao Guo*, Xiaoyan Ma*, Ning Wang, Tingting Ding, Bo Zheng, Liwei Guo, Chaoyong Huang, Wuyuan Zhang, Lichao Sun, Yi-Xin Huo*. A transfer ribonucleic acid Modification-based Identification of amiNo acid Overproducers (AMINO). 2023 (submitted)
Hao Guo, Tongtong Chen, Hanrong Zhu, Huiyan Wang, Yi-Xin Huo*. Engineering key amino acid residues of typical pentacyclic triterpene synthases for improving the activity. 2023 (submitted)
Junkai Tuo, Said Nawab, Xiaoyan Ma*, Yi-Xin Huo. Recent advances in screening amino acid overproducers. Engineering Microbiology, 2022: https://doi.org/10.1016/j.engmic. 2022.100066 (发表年月 2023-01)
Changgeng Xu, Qin Zou, Jiheng Tian, Mengyuan Li, Baowen Xing, Julia Gong, Jiangyun Wang*, Yi-Xin Huo*, Shuyuan Guo*. Simplified Construction of Engineered Bacillus subtilis Host for Improved Expression of Proteins Harboring Noncanonical Amino Acids. ACS Synth Biol. 2023 Feb 17;12(2):583-595. （影响因子5.249，发表年月2023-02）
Yuhui Du#, Li Li#, Yue Zheng, Jiaheng Liu, Julia Gong, Zekai Qiu, Yanni Li, Jianjun Qiao, Yi-Xin Huo. Incorporation of Non-Canonical Amino Acids into Antimicrobial Peptides: Advances, Challenges, and Perspectives. Appl Environ Microbiol. 2022 Dec 13;88(23):e0161722. （影响因子5.005，发表年月2022-12）
Bo Zheng, Shengzhu Yu, Zhenya Chen* and Yi-Xin Huo*. A consolidated review of commercial-scale high-value products from lignocellulosic biomass. Front Microbiol. 2022 Aug 23;13:933882. （影响因子5.64，发表年月2022-08）
Hao Guo, Huiyang Wang, Tongtong Chen, Liwei Guo, Lars M Blank, Birgitta E Ebert, Yi-Xin Huo*. Engineering Critical Amino Acid Residues of Lanosterol Synthase to Improve the Production of Triterpenoids in Saccharomyces cerevisiae. ACS Synth Biol. 2022 Aug 19;11(8):2685-2696. （影响因子5.249，发表年月2022-08）
Liwei Guo, Lichao Sun* and Yi?Xin Huo. Toward bioproduction of oxo chemicals from C1 feedstocks using isobutyraldehyde as an example. Biotechnol Biofuels Bioprod. 2022 Aug 9;15(1):80. （影响因子7.67，发表年月2022-08）
Ning Wang, Yi-Xin Huo*. Using genome and transcriptome analysis to elucidate biosynthetic pathways. Curr Opin Biotechnol. 2022, 75: 102708.（影响因子9.74，发表年月2022-06）
Tong Wu, Yumei Liu, Jinsheng Liu, Zhenya Chen*, Yi-Xin Huo*. Metabolic engineering and regulation of diol biosynthesis from renewable biomass in Escherichia coli. Biomolecules. 2022, 12:715.（影响因子6.064，发表年月2022-06）
刘玉美，毋彤，陈振娅，霍毅欣*。非天然氨基酸及非天然蛋白合成的研究进展。生物加工过程。2022,20(02):182-194. （影响因子1.109，发表年月2022-06）
Zhenya Chen, Tongtong Chen, Shengzhu Yu, Yi-Xin Huo*. A high-throughput visual screening method for p-hydroxybenzoate hydroxylase to increase phenolic compounds biosynthesis. Biotechnol Biofuels Bioprod . 2022, 15(1): 1-15.（影响因子7.67，发表年月2022-05）
Mengyuan Li, Yi-Xin Huo*, Shuyuan Guo*. CRISPR-Mediated Base Editing: From Precise Point Mutation to Genome-Wide Engineering in Nonmodel Microbes. Biology. 2022, 11(4): 571.（影响因子5.007，发表年月2022-04）
Jiheng Tian, Baowen Xing, Mengyuan Li, Changgeng Xu, Yi-Xin Huo*, Shuyuan Guo*. Efficient Large-Scale and Scarless Genome Engineering Enables the Construction and Screening of Bacillus subtilis Biofuel Overproducers. Int. J. Mol. Sci. 2022, 23, 4853.（影响因子5.923，发表年月2022-04）
Yuhui Du, Wei Song, Zhiqiu Yin, Shengbo Wu, Jiaheng Liu, Ning Wang, Hua Jin, Jianjun Qiao, Yi-Xin Huo*. Genomic Analysis Based on Chromosome-Level Genome Assembly Reveals an Expansion of Terpene Biosynthesis of Azadirachta indica. Front Plant Sci. 2022, 13: 853861.（影响因子5.753，发表年月2022-04）
Bo Zheng, Yinchao He, Pengxiang Zhang, Yi-Xin Huo*, Yanbin Yin. Polyphenol Utilization Proteins in the Human Gut Microbiome. Appl Environ Microbiol. 2022 Feb 8;88(3):e0185121.（影响因子5.005，发表年月2022-02）
Tong Wu#, Zhenya Chen#, Shuyuan Guo, Cuiying Zhang, Yi-Xin Huo*. Engineering transcription factor BmoR mutants for constructing multifunctional alcohol biosensors. ACS Synth Biol. 2022, 11(3): 1251-1260（影响因子5.249，发表年月2022-02）
Shengzhu Yu, Bo Zheng, Zhenya Chen*, Yi-Xin Huo. Metabolic engineering of Corynebacterium glutamicum for producing branched chain amino acids. Microb Cell Fact. 2021. 20(1): 1-14（影响因子6.352，发表年月2021-12）
Luyao Zhao, Zhenya Chen, Sheng Lin, Tong Wu, Shengzhu Yu, Yi-Xin Huo*. In Vitro Biosynthesis of Isobutyraldehyde Through the Establishment of a One-Step Self-Assembly-Based Immobilization Strategy. J Agr Food Chem. 2021. 69(48): 14609-19（影响因子5.279，发表年月2021-11）
Huiyan Wang#, Hao Guo#, Ning Wang*, Yi-Xin Huo*. Toward the Heterologous Biosynthesis of Plant Natural Products: Gene Discovery and Characterization. ACS Synth Biol. 2021（影响因子5.249，发表年月2021-11）
Xiaoyan Ma#, Lianjie Ma#, Yi-Xin Huo*. Reconstructing the transcription regulatory network to optimize resource allocation for robust biosynthesis. Trends Biotechnol. 2021（影响因子19.526，发表年月2021-11）
马晓焉，王雪芹，马炼杰，霍毅欣*。高级醇的微生物绿色制造。生物工程学报。2021. 37(05): 1721-36（影响因子0.977，发表年月2021-05）
Jingge Wang#, Chaoyong Huang#, Kai Guo, Lianjie Ma, Xiangyu Meng, Ning Wang*, Yi-Xin Huo*. Converting Escherichia coli MG1655 into a chemical overproducer through inactivating defense system against exogenous DNA. Syn Syst Biotechno. 2020. 5(4): 333-42（影响因子4.781，发表年月2020-12）
Huiyan Wang, Ning Wang*, Yi-Xin Huo*. Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica). BMC Genomics. 2020. 21(1): 1-17（影响因子3.969，发表年月2020-10）
Mengli Xia, Lin Hu, Yi-Xin Huo, Yu Yang*. Myroides albus sp. nov., isolated from the gut of plastic-eating larvae of the coleopteran insect Zophobas atratus. Int J Syst Evol Microbiol. 2020. 70(10): 5460-6（影响因子2.747，发表年月2020-09）
Ziyu Xu, Mengli Xia, Yi-Xin Huo, Yu Yang*. Intestinirhabdus alba gen. nov., sp. nov., a novel genus of the family Enterobacteriaceae, isolated from the gut of plastic-eating larvae of the Coleoptera insect Zophobas atratus. Int J Syst Evol Microbiol. 2020. 70(9): 4951-9（影响因子2.747，发表年月2020-09）
Chaoyong Huang#, Liwei Guo#, Jingge Wang, Ning Wang, Yi-Xin Huo*. Efficient long fragment editing technique enables large-scale and scarless bacterial genome engineering. Appl Microbiol Biotechnol. 2020. 104(18): 7943-56（影响因子4.813，发表年月2020-08）
Hao Guo, Huiyan Wang, Yi-Xin Huo*. Engineering critical enzymes and pathways for improved triterpenoid biosynthesis in yeast. ACS Synth Biol. 2020. 9(9): 2214-27（影响因子5.249，发表年月2020-08）
梁昕鑫，唐丹，霍毅欣*。蛋白源生物质的绿色生物转化。生物技术通报。2020. 36(12): 216（影响因子0.986，发表年月2020-07）
Shengzhu Yu, Liwei Guo, Luyao Zhao, Zhenya Chen*, Yi-Xin Huo*. Metabolic engineering of E. coli for producing phloroglucinol from acetate. Appl Microbiol Biotechnol. 2020. 104(18): 7787-99（影响因子4.813，发表年月2020-07）
Xiaoyan Ma, Lianjie Ma, Yi-Xin Huo*, Harnessing the hierarchy of transcriptional regulation: engineering of the gene expression network for efficient production, in Systems and Synthetic Metabolic Engineering. 2020, Elsevier. p. 107-24. （发表年月2020-07）
Zhiqiu Yin, Jiaheng Liu, Binghai Du, Hai-Hua Ruan, Yi-Xin Huo*, Yuhui Du*, Jianjun Qiao*. Whole-Genome-Based survey for polyphyletic serovars of Salmonella enterica subsp. enterica provides new insights into public health surveillance. Int J Mol Sci. 2020. 21(15): 5226（影响因子5.924，发表年月2020-07）
Jiakang Ru, Yi-Xin Huo, Yu Yang*. Microbial degradation and valorization of plastic wastes. Front Microbiol. 2020. 11: 442（影响因子5.64，发表年月2020-04）
Said Nawab, Ning Wang*, Xiaoyan Ma*, Yi-Xin Huo. Genetic engineering of non-native hosts for 1-butanol production and its challenges: a review. Microb Cell Fact. 2020. 19(1): 1-16（影响因子6.352，发表年月2020-03）
Tingting Ding, Chaoyong Huang, Zeyu Liang, Xiaoyan Ma*, Ning Wang*, Yi-Xin Huo. Reversed paired-gRNA plasmid cloning strategy for efficient genome editing in Escherichia coli. Microb Cell Fact. 2020. 19(1): 1-13（影响因子6.352，发表年月2020-03）
Mengli Xia, Jialei Wang, Yi-Xin Huo, Yu Yang*. Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L. Int J Syst Evol Microbiol. 2020. 70(2): 790-6（影响因子2.747，发表年月2020-02）
Lianjie Ma#, Liwei Guo#, Yunpeng Yang, Kai Guo, Yajun Yan, Xiaoyan Ma*, Yi-Xin Huo. Protein-based biorefining driven by nitrogen-responsive transcriptional machinery. Biotechnol Biofuels Bioprod. 2020. 13(1): 1-14（影响因子7.67，发表年月2020-02）
Huan Yu#, Zhenya Chen#, Ning Wang, Shengzhu Yu, Yajun Yan, Yi-Xin Huo*. Engineering transcription factor BmoR for screening butanol overproducers. Metab Eng. 2019. 56: 28-38（影响因子9.783，发表年月2019-12）
Chaoyong Huang, Tingting Ding, Jingge Wang, Xueqin Wang, Liwei Guo, Jialei Wang, Lin Zhu, Changhao Bi, Xueli Zhang, Xiaoyan Ma, Yi-Xin Huo*. CRISPR-Cas9-assisted native end-joining editing offers a simple strategy for efficient genetic engineering in Escherichia coli. Appl Microbiol Biotechnol. 2019. 103(20): 8497-509（影响因子4.813，发表年月2019-10）
Liyuan Jin#, Said Nawab#, Mengli Xia, Xiaoyan Ma*, Yi-Xin Huo*. Context‐dependency of synthetic minimal promoters in driving gene expression: a case study. Microb Biotechnol. 2019. 12(6): 1476-86（影响因子5.813，发表年月2019-10）
杨云彭，马晓焉，霍毅欣*。密码子优化策略在异源蛋白表达中的应用。生物工程学报。2019. 35(12): 2227-37（影响因子0.977，发表年月2019-09）
郑博，王宁*，霍毅欣。基于转录和翻译调控的氨基酸高产菌株筛选及构建策略。生物技术通报。2020. 36(4): 34（影响因子0.986，发表年月2019-09）
Xiaoyan Ma#, Xinxin Liang#, Yi-Xin Huo*. Developing a transformation-independent and unbiased qPCR assay to rapidly evaluate the determinants of DNA assembly efficiency. Engineering. 2019. 5(4): 803-10（影响因子7.553，发表年月2019-08）
Zhenya Chen#, Luyao Zhao#, Jiakang Ru, Shengzhu Yu, Huan Yu, Huiyong Ren, Yuhong Zhang, Wei Zhang, Fankai Lin, Yi-Xin Huo*. A novel protein purification strategy mediated by the combination of CipA and Ssp DnaB intein. J Biotechnol. 2019. 301: 97-104（影响因子2.563，发表年月2019-08）
Yi-Xin Huo, Bo Zheng, Ning Wang, Yunpeng Yang, Xinxin Liang, Xiaoyan Ma*. Identifying amino acid overproducers using rare-codon-rich markers. J Vis Exp. 2019. 148: e59331（影响因子1.355，发表年月2019-06）
Jiao Zhang, Fayu Yang, Yunpeng Yang, Yu Jiang, Yi-Xin Huo*. Optimizing a CRISPR-Cpf1-based genome engineering system for Corynebacterium glutamicum. Microb Cell Fact. 2019. 18(1): 1-13（影响因子6.352，发表年月2019-03）
Huan Yu, Ning Wang, Wenbo Huo, Yuhong Zhang, Wei Zhang, Yu Yang, Zhenya Chen*, Yi-Xin Huo*. Establishment of BmoR-based biosensor to screen isobutanol overproducer. Microb Cell Fact. 2019. 18(1): 1-11（影响因子6.352，发表年月2019-02）
Yuan Yu, Pengcheng Chang, Huan Yu, Huiyong Ren, Danning Hong, Zeyan Li, Ying Wang, Hao Song, Yi-Xin Huo, Chun Li*. Productive amyrin synthases for efficient α-amyrin synthesis in engineered Saccharomyces cerevisiae. ACS Synth Biol. 2018. 7(10): 2391-402（影响因子5.249，发表年月2018-10）
Bo Zheng#, Xiaoyan Ma#, Ning Wang, Tingting Ding, Liwei Guo, Xiaorong Zhang, Yu Yang, Chun Li, Yi-Xin Huo*. Utilization of rare codon-rich markers for screening amino acid overproducers. Nat Commun. 2018. 9(1): 1-11（影响因子14.919，发表年月2018-09）
Yi-Xin Huo, Huiyong Ren, Huan Yu, Luyao Zhao, Shengzhu Yu, Yajun Yan, Zhenya Chen*. CipA-mediating enzyme self-assembly to enhance the biosynthesis of pyrogallol in Escherichia coli. Appl Microbiol Biotechnol. 2018. 102(23): 10005-15（影响因子4.813，发表年月2018-09）
彭瑞婷，夏孟丽，茹家康，霍毅欣，杨宇*。聚氨酯塑料的微生物降解。生物工程学报。2018. 34(9): 1398-409（影响因子0.977，发表年月2018-09）
Ke Xu#, Bo Lv#, Yi-Xin Huo*, Chun Li*. Toward the lowest energy consumption and emission in biofuel production: combination of ideal reactors and robust hosts. Curr Opin Biotechnol. 2018. 50: 19-24（影响因子9.74，发表年月2018-04）
杨发誉，杨云彭，霍毅欣*。合成生物学中不依赖限制性内切酶的分子克隆策略。中国生物化学与分子生物学报。2018. 34(4): 364-70（影响因子0.812，发表年月2018-04）
Yi-Xin Huo, Liwei Guo, Xiaoyan Ma*. Biofuel production with a stress-resistant and growth phase-independent promoter: mechanism revealed by in vitro transcription assays. Appl Microbiol Biotechnol. 2018. 102(6): 2929-40（影响因子4.813，发表年月2018-02）
Ming Zhu, Caixia Wang, Wentao Sun, Anqi Zhou, Ying Wang, Genlin Zhang, Xiaohong Zhou, Yi-Xin Huo, Chun Li*. Boosting 11-oxo-β-amyrin and glycyrrhetinic acid synthesis in Saccharomyces cerevisiae via pairing novel oxidation and reduction system from legume plants. Metab Eng. 2018. 45: 43-50（影响因子9.783，发表年月2018-01）
Ke Xu, Liman Gao, Jalees Ul Hassan, Zhiping Zhao, Chun Li, Yi-Xin Huo, Guiyan Liu*. Improving the thermo-tolerance of yeast base on the antioxidant defense system. Chem Eng Sci. 2018. 175: 335-42（影响因子4.311，发表年月2018-01）
Xiaoxue Wang, Dong Wang, Yi-Xin Huo, Dazhang Dai, Chihua Li, Chun Li, Guiyan Liu*. Identification of isoliquiritigenin as an activator that stimulates the enzymatic production of glycyrrhetinic acid monoglucuronide. Sci Rep-UK. 2017. 7(1): 1-10（影响因子4.38，发表年月2017-10）
Yi-Xin Huo. Amino Acid Biosynthesis and Its Metabolic Engineering Applications. Engineering Microbial Metabolism for Chemical Synthesis. 2017: 69-95
Xiaoyan Ma, Yi-Xin Huo*. The application of microfluidic-based technologies in the cycle of metabolic engineering. Syn Syst Biotechno. 2016. 1(3): 137-42（影响因子4.781，发表年月2016-09）
Natasha K Vidangos, Johanna Heideker, Artem Lyubimov, Meindert Lamers, Yi-Xin Huo, Jeffrey G Pelton, Jimmy Ton, Jay Gralla, James Berger, David E Wemmer*. DNA recognition by a σ54 transcriptional activator from Aquifex aeolicus. J Mol Biol. 2014. 426(21): 3553-68（影响因子5.469，发表年月2015-10）
Yuan-Tao Zhang, Feng Jiang, Zhe-Xian Tian, Yi-Xin Huo, Yi-Cheng Sun, Yi-Ping Wang*. CRP-cyclic AMP dependent inhibition of the xylene-responsive σ54-promoter Pu in Escherichia coli. PLoS One. 2014. 9(1): e86727（影响因子3.24，发表年月2014-01）
Yi-Xin Huo, David G Wernick, James C Liao*. Toward nitrogen neutral biofuel production. Curr Opin Biotechnol. 2012. 23(3): 406-13（影响因子9.74，发表年月2012-06）
Han Li, Paul H Opgenorth, David G Wernick, Steve Rogers, Tung-Yun Wu, Wendy Higashide, Peter Malati, Yi-Xin Huo, Kwang Myung Cho, James C Liao*. Integrated electromicrobial conversion of CO2 to higher alcohols. Science. 2012. 335(6076): 1596（影响因子47.728，发表年月2012-05）
Harsharan Singh Bhatia, Rahul Agrawal, Sandeep Sharma, Yi-Xin Huo, Zhe Ying, Fernando Gomez-Pinilla*. Omega-3 fatty acid deficiency during brain maturation reduces neuronal and behavioral plasticity in adulthood. PloS one. 2011. 6(12): e28451（影响因子3.24，发表年月2011-12）
Yi-Xin Huo, Kwang Myung Cho, Jimmy G Lafontaine Rivera, Emma Monte, Claire R Shen, Yajun Yan, James C Liao*. Conversion of proteins into biofuels by engineering nitrogen flux. Nat Biotechnol. 2011. 29(4): 346-51（影响因子54.908，发表年月2011-05）
Yi-Xin Huo#, Yuan-Tao Zhang#, Yan Xiao, Xiaodong Zhang, Martin Buck, Annie Kolb, Yi-Ping Wang*. IHF-binding sites inhibit DNA loop formation and transcription initiation. Nucleic Acids Res. 2009. 37(12): 3878-86（影响因子16.971，发表年月2009-04）
Jay D Gralla*, Yi-Xin Huo. Remodeling and activation of Escherichia coli RNA polymerase by osmolytes. Biochemistry. 2008. 47(50): 13189-96（影响因子3.163，发表年月2008-11）
Yi‐Xin Huo, Adam Z Rosenthal, Jay D Gralla*. General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C‐terminal domain. Mol Microbiol. 2008. 70(2): 369-78（影响因子3.501，发表年月2008-09）
Xian-Jun Mao#, Yi-Xin Huo#, Martin Buck, Annie Kolb, Yi-Ping Wang*. Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli. Nucleic Acids Res. 2007. 35(5): 1432-40（影响因子16.971，发表年月2007-02）
Yi-Xin Huo, Bei-Yan Nan, Cong-Hui You, Zhe-Xian Tian, Annie Kolb, Yi-Ping Wang*. FIS activates glnAp2 in Escherichia coli: role of a DNA bend centered at ?55, upstream of the transcription start site. FEMS Microbiol Lett. 2006. 257(1): 99-105（影响因子2.742，发表年月2006-04）
Yi‐Xin Huo#, Zhe‐Xian Tian#, Mathieu Rappas, Jin Wen, Yan‐Cheng Chen, Cong‐Hui You, Xiaodong Zhang, Martin Buck, Yi‐Ping Wang*, Annie Kolb. Protein‐induced DNA bending clarifies the architectural organization of the σ54‐dependent glnAp2 promoter. Mol Microbiol. 2006. 59(1): 168-80（影响因子3.501，发表年月2006-01）
Yi‐Xin Huo. Activité de promoteurs dépendant de sigma54 et courbure de l'ADN induite par des protéines/sous la direction de Yi-Ping Wang, Annie Kolb. 2005. Thèse soutenue en co-tutelle. - Thèse de doctorat: Microbiologie: Université de Pékin: 2005 Thèse de doctorat: Microbiologie: Paris 7: 2005
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