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Gangling Li#，Bingxia Xu#, Yanpei Zhang, Yawen Xu, Najeeb Ullah Khan, Jianyin Xie, Xingming Sun, Haifeng Guo, Zhenyuan Wu, Xueqiang Wang, Hongliang Zhang, Jinjie Li, Jianlong Xu, Wensheng Wang, Zhanying Zhang *, Zichao Li *. RGN1 controls grain number and shapes panicle architecture in rice. Plant Biotechnology Journal, 2021, online, doi: 10.1111/pbi.13702
Jilong Li#, Yawen Zeng#, Yinghua Pan#, Lei Zhou#, Zhanying Zhang, Haifeng Guo, Qijin Lou, Guanghou Shui, Hanguang Huang, He Tian, Yongmei Guo, Pingrong Yuan, Hong Yang, Guojun Pan, Ruiying Wang, Hongliang Zhang, Shuhua Yang, Yan Guo, Song Ge, Jinjie Li,* and Zichao Li*. Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice，New Phytologist，2021，231:1056-1072, https://doi.org /10.1111/nph.17407
Jinjie Li#*, Bo Tang#, Yingxiu Li#, Chenguang Li#, Minjie Guo, Haiyang Chen, Shichen Han, Jin Li, Qijin Lou, Wenqiang Sun, Peng Wang, Haifeng Guo, Wei Ye, Zhanying Zhang, Hongliang Zhang, Sibin Yu, Long Zhang, Zichao Li*. Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes. Journal Integrative Plant Biology, 2021, 63 (8) : 1521–1536, doi:10.1111/jipb.13140.
Yan Zhao#, ZhigangYin#, Xueqiang Wang, Conghui Jiang, Muhammad Mahran Aslam, Fenghua Gao, Yinghua Pan, Jianyin Xie, Xiaoyang Zhu，Luhao Dong, Yanhe Liu, Hongliang Zhang, Jinjie Li & Zichao Li*. Genetic basis and network underlying synergistic roots and shoots biomass accumulation revealed by genome?wide association studies in rice. Scientific Reports, 2021, 11:13769, https://doi.org/10.1038/s41598-021-93170-3
Gangling Li, Hongliang Zhang, Jinjie Li, Zhanying zhang*, Zichao Li *. Genetic control of panicle architecture in rice. the Crop Journal, 2021, 9(3): 590-597,https://doi.org/10.1016 /j.cj.2021.02.004
Zhanying zhang#, Xingming Sun#, Xiaoqian Ma, Bingxia Xu, Yong Zhao, Zhiqi Ma ,Gangling Li, Najeeb Ullah Khan, Yinghua Pan, Yuntao Liang, Hongliang Zhang , Jinjie Li, Zichao Li*, GNP6, a novel allele of MOC1, regulates 1 panicle and tiller development in rice. the Crop Journal, 2021, 9(1): 57-67, https://doi.org/10.1016/j.cj.2020.04.011
Xiaoqian Ma#, Fengmei Li#, Xueqiang Wang, Haifeng Guo, Jianyin Xie, Xiaoyang Zhu, Najeeb Ullah Khan, Quan Zhang, Zhanying Zhang, Jinjie Li, Zichao Li* and Hongliang Zhang*，Genetic architecture to cause dynamic change in tiller and panicle numbers revealed by genome-wide association study and transcriptome profile in rice. The plant journal, 2020, 104：1603-1616， doi: 10.1111/tpj.15023
Peng Xu, Jun Yang , Zhenbing Ma, Diqiu Yu, Jiawu Zhou, Dayun Tao,* and Zichao Li*, Identification and Validation of Aerobic Adaptation QTLs in Upland Rice. Life, 2020, 10, 65; doi:10.3390/life10050065
Haifeng Guo#, Yawen Zeng#, Jilong Li1, Xiaoqian Ma, Zhanying Zhang, Qijin Lou, Jin Li, Yunsong Gu, Hongliang Zhang, Jinjie Li,* and Zichao Li*, Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice. Plant Biotechnology Journal, 2020, 18(12): 2491-2503, doi: 10.1111/pbi.13424
Jie Yuan#, Xueqiang Wang#, Yan Zhao#, Najeeb Ullah Khan, Zhiqiang Zhao, Yanhong Zhang, Xiaorong Wen, Fusen, Tang, Fengbin Wang* & Zichao Li*, Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS. Scientific Reports, 2020, 10:9958 | https://doi.org/10.1038/s41598-020-66604-7
Yanpei Zhang#, Zhanying Zhang#, Xingming Sun, Xiaoyang Zhu, Ben Li, Jinjie Li, Haifeng Guo, Chao Chen, Yinghua Pan, Yuntao Liang, Zhijian Xu, Hongliang Zhang, Zichao Li*. Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica.Plant Biotechnology Journal, 2019, 17(8): 1547-1559, doi: 10.1111/pbi.13080
Huili Yan#, Wenxiu Xu#, Jianyin Xie#, Yiwei Gao#, Lulu Wu, Liang Sun, Lu Feng, Xu Chen, Tian Zhang, Changhua Dai, Ting Li, Xiuni Lin, Zhanying Zhang, Xueqiang Wang, Fengmei Li, Xiaoyang Zhu, Jinjie Li, Zichao Li, Caiyan Chen, Mi Ma, Hongliang Zhang* & Zhenyan He*. Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies, Nature Communications, 2019, 10: 2562, doi: 10.1038/s41467-019-10544-y
Zhanying Zhang#, Jinjie Li#, Zuoshun Tang#, Hongliang Zhang, Xingming Sun, Jianping Yu, Guoxin Yao, Gangling Li, Haifeng Guo, Jilong Li, Huamao Wu, Hanguang Huang, Yawen Xu, Zhigang Yin, Yanhua Qi, Rongfeng Huang, Weicai Yang and Zichao Li*.Gnp4/LAX2, a RAWUL Protein, Modulates Grain Length by Interfering with OsIAA3-OsARF25 Interaction in Rice. Journal of Experimental Botany, 2018, 20(69): 4723-4737, doi:10.1093/jxb/ery256
Yan Zhao#, Hongliang Zhang#, Jianlong Xu#, Conghui Jiang, Zhigang Yin, Haiyan Xiong, Jianyin Xie, Xueqiang Wang, Xiaoyang Zhu, Yang Li, Weipeng Zhao, Muhammad Abdul Rehman Rashid, Jinjie Li, Wensheng Wang, Binying Fu, Guoyou Ye, Yan Guo, Zhiqiang Hu, Zhikang Li* & Zichao Li*. Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions, PLOS Genetics, 2018,14(8): e1007521. https://doi.org /10.1371/journal.pgen.1007521
Haiyan Xiong#, Jianping Yu#, Jinjie Li, Hongliang Zhang, Xin Wang, Pengli Liu, Jinli Miao,Yan Zhao, Chonghui Jiang, Zhigang Yin, Yang Li, Yan Guo, Binying Fu, Wensheng Wang, Zhikang Li, Jauhar Ali and Zichao Li*. Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging. Plant Physiology, 2018, 178(1): 451-467; DOI: https://doi.org /10.1104/pp.17.01492
Wensheng Wang#, Ramil Mauleon#, Zhiqiang Hu#, Dmytro Chebotarov#, Shuaishuai Tai#, Zhichao Wu#, Min Li#, Tianqing Zheng#, Roven Rommel Fuentes#, Fan Zhang#, Locedie Mansueto, Dario Copetti, Millicent Sanciangco, Kevin Christian Palis, Jianlong Xu, Chen Sun3, Binying Fu, Hongliang Zhang, Yongming Gao, Xiuqin Zhao, Fei Shen, Xiao Cui, Hong Yu, Zichao Li, Miaolin Chen, Jeffrey Detras, Yongli Zhou, Xinyuan Zhang, Yue Zhao, Dave Kudrna, Chunchao Wang, Rui Li, Ben Jia, Jinyuan Lu, Xianchang He, Zhaotong Dong, Jiabao Xu, Yanhong Li, Miao Wang, Jianxin Shi, Jing Li, Dabing Zhang, Seunghee Lee, Wushu Hu, Alexander Poliakov, Inna Dubchak, Victor Jun Ulat, Frances Nikki Borja, John Robert Mendoza, Jauhar Ali, Jing Li, Qiang Gao, Yongchao Niu, Zhen Yue, Ma. Elizabeth B. Naredo, Jayson Talag, Xueqiang Wang, Jinjie Li, Xiaodong Fang, Ye Yin, Jean-Christophe Glaszmann, Jianwei Zhang, Jiayang Li, Ruaraidh Sackville Hamilton, Rod A. Wing*, Jue Ruan*, Gengyun Zhang*, Chaochun Wei*, Nickolai Alexandrov*, Kenneth L. McNally*, Zhikang Li* & Hei Leung. Genomic variation in 3,010 diverse accessions of Asian cultivated rice, Nature, 2018, 557: 43-49
Jianping Yu#, Jinli Miao#, Zhanying Zhang, Haiyan Xiong, Xiaoyang Zhu, Xingming Sun, Yinghua Pan, Yuntao Liang, Qiang Zhang, M.A.R. Rashid, Jinjie Li1, Hongliang Zhang*, Zichao Li*. Alternative splicing of OsLG3b controls grain length and yield in japonica rice. Plant Biotechnology Journal, 2018, 16(9): 1667–1678. DOI: 10.1111/pbi.12903
Xingming Sun#, Zhanying Zhang#, Chao Chen#, Wei Wu, Nannan Ren, Conghui Jiang, Jianping Yu, Yan Zhao, Xiaoming Zheng, Qingwen Yang, Hongliang Zhang, Jinjie Li and Zichao Li*.The C-S-A gene system regulates hull pigmentation and reveals evolution of anthocyanin biosynthesis pathway in rice, Journal of Experimental Botany, 2018, 69(7): 1485–1498 (10.1093/jxb/ery001)
Jinjie Li, Xiao Guo, Minghui Zhang, Xin Wang, Yan Zhao, Zhigang Yin, Haiyan Xiong, Hongliang Zhang, Elena Todorovska, Zichao Li*. OsERF71 acts as a transcription factor and confers drought and salinity tolerance via modulating ABA signaling and proline biosynthesis under stresses. Plant Science, 2018, 270: 131–139, https://doi.org/10.1016/j.plantsci
Yan Zhao#, Weipeng Zhao#, Conghui Jiang#, Elena Georgieva Todorovska, Xiaoning Wang, Haiyang Xiong, Zhigang Yin, Yanfa Chen, Xin Wang, Jianyin Xie, Rashid Muhammad Abdul Rehman, Hongliang Zhang, Jinjie Li*, Zichao Li*. Genetic architecture and two genes OsML1 and OsML2 for deep-sowing tolerance were revealed by Non-Syn GWAS, Frontiers in Plant Scicence, 2018, 9(3), DOI: 10.3389/ fpls.2018.00332
Fengmei Li, Jianyin Xie, Xiaoyang Zhu, Xueqiang Wang, Yan Zhao, Xiaoqian Ma, Zhanying Zhang, Muhammad A. R. Rashid, Zhifang Zhang, Linran Zhi, Shuyang Zhang, Jinjie Li, Zichao Li and Hongliang Zhang* . Genetic Basis Underlying Correlations Among Growth Duration and Yield Traits Revealed by GWAS in Rice (Oryza sativa L.). FRONTIERS IN PLANT SCIENCE, 2018, 9(5): doi: 10.3389/fpls.2018.00650
Jilong Li#, Yinghua Pan#, Haifeng Guo, Lei Zhou, Shuming Yang, Zhanying Zhang, Jiazhen Yang, Hongliang Zhang, Jinjie Li, Yawen Zeng*, Zichao Li*. Fine mapping of QTL qCTB10-2 that confers cold tolerance at the booting stage in rice. Theor Appl Genet, 2018, 131:157–166, (DOI 10.1007/s00122-017-2992-3)
Zhanying Zhang#, Jinjie Li#, Yinghua Pan#, Jilong Li#, Lei Zhou#, Hongli Shi#, Yawen Zeng, Haifeng Guo, Shuming Yang, Weiwei Zheng, Jianping Yu, Xingming Sun, Gangling Li, Yanglin Ding, Liang Ma, Shiquan Shen, Luyuan Dai, Hongliang Zhang, Shuhua Yang, Yan Guo, Zichao Li*. Natural variation in CTB4a enhances rice adaptation to cold habitats, Nature Communications, 2017, 8, 14788, DOI: 10.1038/ncomms14788
Jianping Yu#, Haiyan Xiong#, Xiaoyang Zhu#, Hongliang Zhang, Huihui Li, Jinli Miao, Wensheng Wang, Zuoshun Tang, Zhanying Zhang, Guoxin Yao, Qiang Zhang, Yinghua Pan, Xin Wang, M.A.R. Rashid, Jinjie Li, Yongmin Gao, Zhikang Li, Weicai Yang, Xiangdong Fu, Zichao Li*. OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap, BMC Biology, 2017, DOI : 10.1186/s12915-017-0365-7
Jinjie Li, Yang Li, Zhigang Yin, Jihong Jiang, Minghui Zhang, Xiao Guo, Zhujia Ye, Yan Zhao, Haiyan Xiong, Zhanying Zhang, Hongliang Zhang, Gynheung An, Nam-Chon Paek, Jauhar Ali, Zichao Li*. Overexpression of OsASR5 enhances drought tolerance by reducing water loss in Oryza sativa L. and Arabidopsis, Plant Biotechnology Journal, 2017, 15, pp. 183–196, doi: 10.1111/pbi.12601
Jizeng Jia, Hongjie Li, Xueyong Zhang, Zichao Li, Lijuan Qiu. Genomics-based plant germplasm research (GPGR). THE CROP JOURNAL, 2017, 5: 166-174
Ben Li#, Yanpei Zhang#, Jinjie Li, Guoxin Yao, Huiqiao Pan, Guanglong Hu, Chao Chen, Hongliang Zhang, Zichao Li*. Fine mapping of two additive effect genes for awn development in rice (Oryza sativa L.), PLOS ONE, 2016，11(8): e0160792. doi: 10.1371/journal.pone. 0160792
Muhammad Abdul Rehman Rashid, Yan Zhao, Hongliang Zhang, Jinjie Li, and Zichao Li*. Nucleotide diversity, natural variation, and evolution of Flexible culm-1 and Strong culm-2 lodging resistance genes in rice, Genome, 2016,59: 473-483
Elsheikh Y M Ahmed, ZHANG Yan-pei, YU Jian-ping, Rashid M A Rehman, ZHANG Zhan-ying, ZHANG Hong-liang, LI Jin-jie, LI Zi-chao* . Mapping of three QTLs for seed setting and analysis on the candidate gene for qSS-1 in rice (Oryza sativa L.). Journal of Integrative Agriculture, 2016, 15(4): 735-743
Yinghua Pan#, Hongliang Zhang#, Dongling Zhang, Jinjie Li, Haiyan Xiong,Jianping Yu, Jilong Li, Muhammad Abdul Rehman Rashid, Gangling Li, Xiaoding Ma, Guilan Cao, Longzhi Han*, Zichao Li*. Genetic analysis of cold tolerance at the germination and booting stages in rice by association mapping. PLOS ONE, 2015, 10(3): e0120590.
Haiyan Xiong#, Jinjie Li#, Pengli Liu, Yan Zhao, Xiao Guo, Yang Li, Hongliang Zhang, Jauhar Ali, Zichao Li*. Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salt tolerance in rice. PLOS ONE, 2014,9(3): e92913
Choon-Tak Kwon, Soo-Cheul Yoo, Bon-Hyuk Koo, Sung-Hwan Cho1,Joon-Woo Park, Zhanying Zhang, Jinjie Li, Zichao Li & Nam-Chonpaek*. Natural variation in early flowering1 contributes to early flowering in japonica rice under long days. Plant Cell and Enviornment. 2014, 37(1): 101-112
Bon-Hyuk Koo, Soo-Cheul Yoo, Joon-Woo Park, Choon-Tak Kwon, Byoung-Doo Lee, Gynheung An, Zhanying Zhang, Jinjie Li, Zichao Li & Nam-Chonpaek*. Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes. Molecular Plant, 2013, 6(6): 1877-1888
Xin Wei, Wei-Hua Qiao, You-Tao Chen, Rong-Sheng Wang, Li-Rong Cao, Wan-Xia Zhang, Nan-Nan Yuan, Zi-Chao Li, Han-Lai Zeng*, Qing-Wen Yang*. Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon. Molecular Ecology, 2012, 21( 20): 5073-5087
Junzhi Duan#, Minghui Zhang#, Hongliang Zhang, Haiyan Xiong, Pengli Liu, Jauhar Ali, Jinjie Li* and Zichao Li*. OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.). Plant Science, 2012,196:143-151
Hongliang Zhang, Dongling Zhang, Meixing Wang, Junli Sun, Yongwen Qi, Xinghua Wei, Longzhi Han, Zichao Li*. Core Collection and Mini Core Collection of Oryza sativa L. in China. Theor Appl Genet, 2011，122(1): 49-61
Junzhou Li, Yan Xie, Hongliang Zhang, Guanglong Hu, Anyong Dai, Lifeng Liu, Ping Mu, Yanying Qu, Zichao Li*. Development of upland rice introgression lines and QTL identification of root traits under different water regimes. Journal of Genetics and Genomics, 2011, 38(12): 547-556
Zhanying Zhang#, Guoxin Yao#, Jinjie Li#, Hongliang Zhang, Huijing Dou, Hongli Shi, Xingming Sun, Zichao Li*. Fine Mapping and Cloning of the Grain Number Per-panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.). Agricultural Science in China. 2011,10(12)：1825-1833
Lei Zhou, Yawen Zeng, Weiwei Zheng, Bo Tang, Shuming Yang, Hongliang Zhang, Jinjie Li, Zichao Li*. Fine mapping a QTL, qCTB7, for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line. Theor Appl Genet, 2010, 121: 893-905
Junzhou Li, Yan Xie, Anyong Dai, Lifeng Liu, Zichao Li*. Root and shoot traits responses to phosphorus deficiency and QTL analysis at seedling stage using introgression lines of rice. Journal of Genetics and Genomics, 2009, 36(3): 173-183
Meixing Wang#, Hongliang Zhang#, Dongling Zhang, Yongwen Qi, Zhilan Fan, Daoyuan Li, Dajian Pan, Yongsheng Cao, Zongen Qiu, Ping Yu, Qingwen Yang, Xiangkun Wang, Zichao Li*. Genetic Structure of Oryza rufipogon Griff. in China. Hereidity, 2008, 101：527-535
Lifeng Liu, Ping Mu, Xueqin Li, Yanying Qu,Yi Wang & Zichao Li* Localization of QTL for Basal Root Thickness in japonica Rice and Effect of Marker-Assisted Selection for a Major QTL. Euphytica, 2008, 164：729-737
Yanying Qu#, Ping Mu#, Hongliang Zhang, Yuxiu Tian, Feng Wen, Yiwu Chen, Zichao Li*， Genetic Analysis and QTL Mapping for Root Morphological Traits at Different Growth Stages in Rice, Genetica, 2008, 133:187-200
Liming Xu#, Lei Zhou#, Yawen Zeng#, Fengmei Wang, Hongliang Zhang, Shiquan Shen, Zichao Li*. Identification and mapping of Quantitative Trait Loci for cold tolerance at the booting stage in a Japonica rice near-isogenic line. Plant Science, 2008, 174: 340-347
Haiguang Wang, Hongliang Zhang, Fenghua Gao, Zichao Li*. Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microassay. Theor Appl Genet, 2007, 115: 1109-1126
Hongliang, Zhang, Junli Sun, Meixing Wang, Ping Yu, Da Zhang, Dengqun Liao, Yawen Zeng, Shiquan Shen, Xiangkun Wang，Zichao Li*. Genetic structure and phylogeography of Rice Landraces in Yunnan, China Revealed by SSR, GENOME，2007，50(1)：72-83
Zichao Li*, Ping Mu, Chunping Li, Hongliang Zhang, Zhikang Li, Xiangkun Wang. QTL mapping of the root traits in a double haploid population from a cross between upland and lowland japonica rice under three environments，Theor Appl Genet, 2005,110: 1244-1252
Li Zichao*, Zhang Hongliang et al., Studies on sampling stratyges for establishment of core collection of rice landrace in Yunnan, China. Genetic resources and crop evolution, 2002，49（1）：67-74
Dongling Zhang, Hongliang Zhang*, Meixing Wang, Yongwen Qi, Junli Sun, Fengmei Wang, Xinghua Wei, Longzhi Han, Zongen Qiu, Shengxiang Tang, Xiangkun Wang, Zichao Li*, Genetic Structure and Differentiation of Oryza sativa L. in China Revealed by Microsatellites, Theor Appl Genet, 2009, 119: 1105-1117
Lei Zhou, Yawen Zeng, Guanglong Hu, Yinghua Pan, Shuming Yang, Aiqing You, Hongliang Zhang, Zichao Li*. Characterization and identification of cold tolerant near-isogenic lines in rice (Oryza sativa L). Breeding Science, 2012, 62: 196–201
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