陈佳星 - 北京师范大学-香港浸会大学

个人简介

陈佳星博士于2022年加入北师港浸大（UIC）理学院，现任计算机科学与技术专业助理教授。她于2014 年获得南开大学学士学位，并在2019年获得香港城市大学计算机科学博士学位。在博士研究期间，她曾担任加州大学伯克利分校（UC Berkeley）数学系访问学者。在加入UIC之前，她曾在香港浸会大学担任博士后研究员。她主要从事机器学习和生物信息等交叉领域学科的研究，在国际期刊上发表论文十余篇。教育背景 2014-2019 香港城市大学计算机博士 2014 加州大学伯克利分校数学系访问学者 2010-2014 南开大学软件工程学士

研究领域

机器学习，生物信息，复杂网络

近期论文

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Chen J, Cheong CW, Lan L, Zhou X, Liu J, Lyu A, Cheung WK, Zhang L, DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data, Recomb-seq 2021 oral presentation paper, Briefings in bioinformatics 22 (6), bbab325, 2021 (IF 11.622). Xu Y, Chen J, Lyu A, et al. dynDeepDRIM: a dynamic deep learning model to infer direct regulatory interactions using time-course single-cell gene expression data[J]. Briefings in Bioinformatics, 2022. (IF 11.622, co-first author) Chen J, Ng Y K, Lin L, Zhang X, Li S C, On triangle inequalities of correlation-based distances for gene expression profiles, BMC Bioinformatics 2023, 24(1): 1-16. Yang Y, Yan J, Fan X, Chen J, Wang Z, et al, The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs, PLoS Genetics, 2021, 17(11): e1009910. (co-first author) Li C, Chen J, Li S C, Understanding Horizontal Gene Transfer network in human gut microbiota, Gut pathogens, 2020, 12(1): 1-20. (co-first author) LYU M, Chen J, JIANG Y, Dong W, Fang Z, Li S C, KDiamend: a package for detecting key drivers in a molecular ecological network of disease, BMC systems biology, 2018, 12(1): 5. (co-first author) Li C, Chen J, Li S C, Deep learning for HGT insertion sites recognition, BMC genomics, 2020, 21(11): 1-18. Zhang L, Chen J, Li S C, More accurate models for detecting gene-gene interactions from public expression compendia, Bioinformatics and Biomedicine (BIBM), 2016 IEEE International Conference on. IEEE, 2016: 1871-1878. Song D, Chen J, Chen G, et al, Parameterized BLOSUM Matrices for Protein Alignment, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 2015, 12(3): 686-694. Zeng Q, Li D, He Y, Li Y, Yang Z, Zhao X, Liu Y, Wang Y, Sun J, Feng X, Wang F, Chen J, et al, Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities, Scientific reports, 2019, 9(1): 1-10 Zeng Q, Yang Z, Wang F, Li D, Liu Y, Wang D, Zhao X, Li Y, Wang Y, Feng X, Chen J, et al. Association between metabolic status and gut microbiome in obese populations, Microbial Genomics, 2021, 7(8).