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1. Yakun Yuan*, D. S. Kim*, J. Zhou*, D. J. Chang, F. Zhu, Y. Nagaoka, Y. Yang, M. Pham, S. J. Osher, O. Chen, P. Ercius, A. K. Schmid, and J. Miao, “Three-dimensional atomic packing in amorphous solids with liquid-like structure”, Nature Materials 21, 95–102 (2022).
2. Y. Yang*, J. Zhou*, F. Zhu*, Yakun Yuan*, D. J. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. J. Osher, A. K. Schmid, L. Hu, P. Ercius, and J. Miao, “Determining the three-dimensional atomic structure of an amorphous solid”, Nature 592, 60–64 (2021).
3. X. Tian*, X. Yan*, G. Varnavides*, Yakun Yuan, D. S. Kim, C. J. Ciccarino, P. Anikeeva, M.-Y. Li, L.-J. Li, P. Narang, X. Pan, and J. Miao, “Capturing 3D atomic defects and phonon localization at the 2D heterostructure interface”, Science Advances 7, 10.1126/sciadv.abi6699 (2021).
4. Q. Li*, V. A. Stoica*, M. Pasciak, Y. Zhu, Yakun Yuan, T. Yang, M. R. McCarter, S. Das, A. K. Yadav, S. Park, C. Dai, H. J. Lee, Y. Ahn, S. D. Marks, S. Yu, C. Kadlec, T. Sato, M. C. Hoffmann, M. Chollet, M. E. Kozina, S. Nelson, D. Zhu, D. A. Walko, A. M. Lindenberg, P. G. Evans, L.-Q. Chen, R. Ramesh, L. W. Martin, V. Gopalan, J. W. Freeland, J. Hlinka, and H. Wen, “Subterahertz collective dynamics of polar vortices”, Nature 592, 376–380 (2021).
5. A. S. McLeod, A. Wieteska, G. Chiriaco, B. Foutty, Y. Wang, Yakun Yuan, F. Xue, V. Gopalan, L. Q. Chen, Z. Q. Mao, A. J. Millis, A. N. Pasupathy, and D. N. Basov, “Nano-imaging of strain-tuned stripe textures in a Mott crystal”, npj Quantum Materials 6, 46 (2021).
6. M. Pham, Yakun Yuan, A. Rana, J. Miao, and S. Osher, “Resire: real space iterative reconstruction engine for tomography”, in preparation (2021).
7. V. Goian, R. Held, E. Bousquet, Yakun Yuan, A. Melville, H. Zhou, V. Gopalan, P. Ghosez, N. A. Spaldin, D. G. Schlom, and S. Kamba1, “Making EuO multiferroic by epitaxial strain engineering”, Communications Materials 1, 74 (2020).
8. J. Miao, X. Tian, D. Kim, J. Zhou, Y. Yang, Y. Yang, Yakun Yuan, C. Ophus, A. Schmid, S. Yang, and et al., “Atomic electron tomography: past, present and future”, Microscopy and Microanalysis, 1–3 (2020).
9. X. Tian*, D. S. Kim*, S. Yang*, C. J. Ciccarino, Y. Gong, Y. Yang, Y. Yang, B. Duschatko, Yakun Yuan, P. M. Ajayan, J. C. Idrobo, P. Narang, and J. Miao, “Correlating the three-dimensional atomic defects and electronic properties of two-dimensional transition metal dichalcogenides”, Nature Materials, 10.1038/s41563-020-0636-5 (2020).
10. R. Gao, A. C. P. Jain, S. Pandya, Y. Dong, Yakun Yuan, H. Zhou, L. R. Dedon, V. Thoreton, S. Saremi, R. Xu, A. Luo, T. Chen, V. Gopalan, E. Ertekin, J. Kilner, T. Ishihara, N. H. Perry, D. R. Trinkle, and L. W. Martin, “Designing optimal perovskite structure for high ionic conduction”, Advanced Materials 32, 1905178 (2020).
11. X. Tian, D. S. Kim, S. Yang, C. J. Ciccarino, Y. Gong, Y. Yang, Y. Yang, B. Duschatko, Yakun Yuan, P. M. Ajayan, and et al., “Determining the 3D Atomic Coordinates and Crystal Defects in 2D Materials with Picometer Precision”, Microscopy and Microanalysis 25, 404–405 (2019).
12. S. Lei, S. Chikara, D. Puggioni, J. Peng, M. Zhu, M. Gu, W. Zhao, Y. Wang, Yakun Yuan, H. Akamatsu, M. H. W. Chan, X. Ke, Z. Mao, J. M. Rondinelli, M. Jaime, J. Singleton, F. Weickert, V. S. Zapf, and V. Gopalan, “Comprehensive magnetic phase diagrams of the polar metal Ca3Ru2O7”, Phys. Rev. B 99, 224411 (2019).
13. Yakun Yuan*, P. Kissin*, D. Puggioni, K. Cremin, S. Lei, Y. Wang, Z. Mao, J. M. Rondinelli, R. D. Averitt, and V. Gopalan, “Ultrafast quasiparticle dynamics in the correlated semimetal Ca3Ru2O7”, Phys. Rev. B 99, 155111 (2019).
14. Yakun Yuan, Y. Lu, G. Stone, K. Wang, C. M. Brooks, D. G. Schlom, S. B. Sinnott, H. Zhou, and V. Gopalan, “Three-dimensional atomic scale electron density reconstruction of octahedral tilt epitaxy in functional perovskites”, Nature Communications 9, 5220 (2018).
15. S. Shetty, A. Damodaran, K. Wang, Yakun Yuan, V. Gopalan, L. Martin, and S. Trolier-McKinstry, “Relaxor Behavior in Ordered Lead Magnesium Niobate (PbMg1/3Nb2/3O3) Thin Films”, Advanced Functional Materials 1804258, 1–9 (2018).
16. R. C. Haislmaier, J. Lapano, Yakun Yuan, G. Stone, Y. Dong, H. Zhou, N. Alem, and R. Engel-Herbert, “Overlapping growth windows to build complex oxide superlattices”, APL Materials 6, 111104 (2018).
17. H. Padmanabhan, Y. Park, D. Puggioni, Yakun Yuan, Y. Cao, L. Gasparov, Y. Shi, J. Chakhalian, J. M. Rondinelli, and V. Gopalan, “Linear and nonlinear optical probe of the ferroelectric-like phase transition in a polar metal, LiOsO3”, Applied Physics Letters 113 (2018).
18. V. Stoica, N. Laanaint, C. Dai, Z. Hong, Yakun Yuan, Z. Zhang, S. Lei, M. McCarter, A. Yadav, A. Damodaran, G. Stone, J. Karapetrova, D. Walko, X. Zhang, L. Martin, R. Ramesh, L.-Q. Chen, H. Wen, V. Gopalan, and J. Freeland, “Optical creation of an oxide supercrystal with 3-dimensional nanoscale periodicity”, Nature Materials 18, 377–383 (2019).
19. J. W. Guo*, P. S. Wang*, Yakun Yuan*, Q. He, J. L. Lu, T. Z. Chen, S. Z. Yang, Y. J. Wang, R. Erni, M. D. Rossell, V. Gopalan, H. J. Xiang, Y. Tokura, and P. Yu, “Strain-induced ferroelectricity and spin-lattice coupling in SrMnO3 thin films”, Phys. Rev. B 97, 235135 (2018).
20. S. Lei, M. Gu, D. Puggioni, G. Stone, J. Peng, J. Ge, Y. Wang, B. Wang, Yakun Yuan, K. Wang, Z. Mao, J. M. Rondinelli, and V. Gopalan, “Observation of Quasi-Two-Dimensional Polar Domains and Ferroelastic Switching in a Metal, Ca3Ru2O7”, Nano Letters 18, 3088–3095 (2018).
21. L. Zhang, Yakun Yuan, J. Lapano, M. Brahlek, S. Lei, B. Kabius, V. Gopalan, and R. Engel-Herbert, “Continuously Tuning Epitaxial Strains by Thermal Mismatch”, ACS Nano 12, 1306–1312 (2018).
22. Y. Cao, Z. Wang, S. Y. Park, Yakun Yuan, X. Liu, S. M. Nikitin, H. Akamatsu, M. Kareev, S. Middey, D. Meyers, P. Thompson, P. J. Ryan, P. Shafer, A. N’Diaye, E. Arenholz, V. Gopalan, Y. Zhu, K. M. Rabe, and J. Chakhalian, “Artificial two-dimensional polar metal at room temperature”, Nature Communications 9, 1547 (2018).
23. H. Akamatsu, Yakun Yuan, V. A. Stoica, G. Stone, T. Yang, Z. Hong, S. Lei, Y. Zhu, R. C. Haislmaier, J. W. Freeland, L.-Q. Chen, H. Wen, and V. Gopalan, “Light-Activated Gigahertz Ferroelectric Domain Dynamics”, Physical Review Letters 120, 096101 (2018).
24. B. Guzelturk, R. A. Belisle, M. D. Smith, K. Bruening, R. Prasanna, Yakun Yuan, V. Gopalan, C. J. Tassone, H. I. Karunadasa, M. D. McGehee, and A. M. Lindenberg, “Terahertz Emission from Hybrid Perovskites Driven by Ultrafast Charge Separation and Strong Electron-Phonon Coupling”, Advanced Materials 30, 1704737 (2018).
25. Y. Yan, Yakun Yuan, B. Wang, V. Gopalan, and N. C. Giebink, “Sub-wavelength modulation of χ(2) optical nonlinearity in organic thin films”, Nature Communications 8, 14269 (2017).
26. T. Wang, K. C. Pitike, Yakun Yuan, S. M. Nakhmanson, V. Gopalan, and B. Jalan, “Chemistry, growth kinetics, and epitaxial stabilization of Sn 2+ in Sn-doped SrTiO3 using (CH3)6Sn2 tin precursor”, APL Materials 4, 126111 (2016).
27. T. H. Kim, D. Puggioni, Yakun Yuan, L. Xie, H. Zhou, N. Campbell, P. J. Ryan, Y. Choi, J.-W. Kim, J. R. Patzner, S. Ryu, J. P. Podkaminer, J. Irwin, Y. Ma, C. J. Fennie, M. S. Rzchowski, X. Q. Pan, V. Gopalan, J. M. Rondinelli, and C. B. Eom, “Polar metals by geometric design”, Nature 533, 68–72 (2016).
28. R. Gao, Y. Dong, H. Xu, H. Zhou, Yakun Yuan, V. Gopalan, C. Gao, D. D. Fong, Z. Chen, Z. Luo, and L. W. Martin, “Interfacial Octahedral Rotation Mismatch Control of the Symmetry and Properties of SrRuO3”, ACS Applied Materials & Interfaces 8, 14871–14878 (2016).
29. R. Quhe, Yakun Yuan, J. Zheng, Y. Wang, Z. Ni, J. Shi, D. Yu, J. Yang, and J. Lu, “Does the Dirac Cone Exist in Silicene on Metal Substrates?”, Scientific Reports 4, 5476 (2015).
30. Yakun Yuan, R. Quhe, J. Zheng, Y. Wang, Z. Ni, J. Shi, and J. Lu, “Strong band hybridization between silicene and Ag(1 1 1) substrate”, Physica E: Low-Dimensional Systems and Nanostructures 58, 38–42 (2014).
31. M. Ye, R. Quhe, J. Zheng, Z. Ni, Y. Wang, Yakun Yuan, G. Tse, J. Shi, Z. Gao, and J. Lu, “Tunable band gap in germanene by surface adsorption”, Physica E: Low-dimensional Systems and Nanostructures 59, 60–65 (2014).