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Ya-Jun Liu , M.-B. Huang, The asymmetric structure of the n -pentane radical cation: a theoretical study, Chem. Phys. Lett . 321, 89-94(2000).
Ya-Jun Liu , M.-B. Huang, Hyperfine structure of some hydrocarbon radical cations: a B3LYP and MP2 study, J. Mol. Struct. (Theochem) 536,133-142 (2001).
Ya-Jun Liu , M.-B. Huang, X. Zhou, S. Yu, The MRSDCI/CIS study of excited electronic states of the SF2 radical, Chem. Phys. Lett. 345,505-511 (2001).
Ya-Jun Liu , Ping-Xian Kuang, Ming-Bao Huang, Theoretical Study of the Benzene Cation, Chemical Joural of Chinese University-Chinese 22, 657-659(2001).
Ya-Jun Liu and Ming-Bao Huang, A theoretical study of low-lying singlet electronic states of the SF2 , Chem. Phys. Letters. 360,400-405 (2002).
Ya-Jun Liu , Ming-Bao Huang, Xiao-Guo Zhou, Quan-Xin Li, and Shu-Qin. Yu, Theoretical investigation on the N + SF2 ---> NS+ reaction involving resonance-enhanced multiphoton ionization process, J. Chem. Phys. 117, 6519-6523(2002).
Ya-Jun Liu, Ming-Bao Huang, Shi-Jun Zheng, Theoretical Study of the Butene and Butane Radical Cations: Molecular and Hyperfine Structures, Acta Chimica Sinica 60, 267-271(2002).
Ya-Jun Liu, P. Persson, H. O. Karlsson, S. Lunell, M. Kadi, D. Karlsson, and J. Davidsson, Photodissociation of bromobenzene, dibromobenzene, and 1,3,5-tribromobenzene, J. Chem. Phys. 120, 6502-6509(2004). (was selected for the April 2004 issue of Virtual Journal of Ultrafast Science)
Ya-Jun Liu, P. Persson, and S. Lunell, Theoretical study of the fast photodissociation channels of the monohalobenzenes, J. Phys Chem. A 108, 2339-2345(2004).
Ya-Jun Liu, P. Persson, and S. Lunell, Theoretical study of the photodissociation of low lying excited states of hydrogen peroxide, Mol. Phys. 102, 2575 -2584 (2004)
Ya-Jun Liu, P. Persson, and S. Lunell, Multireference Calculations of the Phosphorescence and Photodissociation of Chlorobenzene, J. Chem. Phys. 121, 11000-11006(2004).
Ya-Jun Liu and S. Lunell, Multireference calculations of the fluorescence, phosphorescence and photodissociation of p -chlorotoluene, Phys. Chem. Chem. Phys. 7, 3938 - 3942 (2005).
Ya-Jun Liu, A. Lund, P. Persson, and S. Lunell, Density functional theory study of NO adsorbed in A-zeolite, J. Phys Chem. B 109,7948-7951(2005).
Ya-Jun Liu , Ajitha Devarajan , Jesper Wisborg-Krogh, Alexander N. Tarnovsky and Roland Lindh , Spin-orbit ab initio investigation on the photolysis of bromoiodomethane , ChemPhyschem 7 , 955-963(2006).
Hong-Yan Xiao, Ya-Jun Liu*, Wei-Hai Fang*, Density functional theory investigation of the photodissociation channels of acetophenone, Journal of Molecular Structure: THEOCHEM 802 (1-3) 99–103 (2007).
Jun Cao, Ya-Jun Liu* , Wei-Hai Fang*, Multireference Calculation of the Photodissociation of Benzyl Chloride , Chinese Journal of chemistry, 25, 145-148 (2007).
Ya-Jun Liu , Luca De Vico, Roland Lindh, and Wei-Hai Fang, Spin–Orbit Ab Initio Investigation of the Ultraviolet Photolysis of Diiodomethane, ChemPhyschem 8, 890-898 (2007).
Hong-Yan Xiao, Ya-Jun Liu* , Jian-Guo Yu, Wei-Hai Fang , Spin-orbit ab initi12investigation of the photodissociation of CH 2 Cl 2, Chem. Phys. Lett. 436 , 75-79 (2007) .
Ya-Jun Liu, Wei-Hai Fang, Ab initio investigation on the structures and spectra of the firefly luciferin, Science in China (B) ,50, 725-730 (2007).
Luca De Vico*, Ya-Jun Liu* , Jesper Wisborg Krogh, and Roland Lindh, The chemiluminescence of 1,2-dioxetane. Reaction mechanism uncovered, J. Phys Chem. A 111, 8013-8019 (2007).
Hong-Yan Xiao, Jun Cao, Ya-Jun Liu*, Wei-Hai Fang*, Hiroto Tachikawa, and Masaru Shiotani*, Structures and Cis-to-Trans Photoisomerization of Hexafluoro-1,3-butadiene Radical Cation: Electron Spin Resonance ( ESR ) and Computational Studies , J. Phys Chem. A 111, 5192-5200 (2007) .
Mengtao Sun*, Yong Ding, Ganglong Cui, Ya-Jun Liu* , S1 and S2 Excited States of Gas-phase Schiff-base Retinal Chromophore s: a Time-Dependent Density Functional Theoretical Investigation, J. Phys Chem. A 111 , 2946-2950 (2007) .
Ya-Jun Liu , Fei-Xue Gao, Jun-Lin Yang, Progress of Chinese Theoretical Chemistry in 2006, Acta Phys. - Chim. Sin. 23, 790-794 (2007).
Yan-Cong Tian, Ya-Jun Liu* and Wei-Hai Fang*, Theoretical investigation on o -, m -, and p -chlorotoluene photodissociations at 193 and 266 nm , J. Chem. Phys. 127 , 044309(1-8) (2007).
Hong-Yan Xiao, Ya-Jun Liu,* and Wei-Hai Fang*, Multireference Theoretical Investigation on Selectivity of the Bond Fissions in Photodissociation of Acetyl Cyanide, J. Chem. Phys. 127 , 244313 (1-7) (2007). (has been selected for the January 2008 issue of Virtual Journal of Ultrafast Science)
Ya-Jun Liu*, Luca De Vico*, Roland Lindh , Ab initio investigation on the chemical origin of the firefly bioluminescence , J. Photoch Photobio A 194, 261–267 (2008).
Ya-Jun Liu*, Yan-Cong Tian, and Wei-Hai Fang* , Spin-orbit Ab Initio Investigation of the Photolysis of o -, m -, and p -bromotoluene, J. Chem. Phys. 128, 064307(1-8) (2008).
Ya-Jun Liu*, Hong- Yan Xiao, Men-Tao Sun and Wei-Hai Fang , Spin-Orbit Ab Initio Investigation of the Photodissociation of Dibromomethane in the Gas and Solution Phases, J. Comput. Chem. 29, 2513–2519 (2008).
Ya-Jun Liu* and Wei-Hai Fang*,Chapter 1 Multi-Reference and Spin–Orbit Calculations on Photodissociations of Hydrocarbon Halides, Adv. Quant. Chem., 56, 1-29 (2009).
Feng-Yi Liu, Ya-Jun Liu*, Luca De Vico, Roland Lindh*, A Theoretical Study of the Chemiluminescent Decomposition of Dioxetanone, J. Am. Chem. Soc. 131, 6181–6188 (2009).
Shu-Feng Chen, Feng-Yi Liu, Ya-Jun Liu*, An ab initio investigation of the mechanisms of photodissociation in bromobenzene and iodobenzene,J. Chem. Phys. 131, 124304 (1-7) (2009)
Fengyi Liu*, Yajun Liu*, Luca De Vico, Roland Lindh, A CASSCF/CASPT2 approach to the decomposition of thiazole-substituted dioxetanone: Substitution effects and charge-transfer induced electron excitation, Chem. Phys. Lett. 484, 69-75 (2009 ).
Qiu Fang, Ya-Jun Liu*, Wavelength-Dependent Photodissociation of Benzoic Acid Monomer in alpha C―O Fission, J. Phys Chem. A 114, 680-684 (2010).
Ya-Jun Liu*, Yan-Cong Tian, and Wei-Hai Fang, Spin-orbit ab initio investigation of the photolysis of o-, m-, and p-iodotoluene, J. Chem. Phys. 132, 014306 (1-11) (2010).
Isabelle Navizet, Ya-Jun Liu*, Nicolas Ferré, Hong-Yan Xiao, Wei-Hai Fang*, and Roland Lindh*, Color-Tuning Mechanism of Firefly Investigated by Multi-Configurational Perturbation Method, J. Am. Chem. Soc. 132, 706–712 (2010).
Shu-Feng Chen, Ya-Jun Liu*, Feng-Yi Liu, Luca De Vico, Roland Lindh, Multireference calculations on the chemical origin and mechanism of firefly bioluminescence, Luminescence 25, 89-90 (2010).
Yan-Hua Li, Ya-Jun Liu*, Theoretical studies on photochemistry of hydrogen peroxide, Journal of Molecular Science 26, 297-302 (2010).
Su-Li Dong, Ya-Jun Liu*, Theoretical Investigation on Hyperfine Structures of Perfluoropolyether Radicals, CHEM. RES. CHINESE UNIVERSITIES 27, 117-122 (2011)
Shu-Feng Chen, Ya-Jun Liu*, Isabelle Navizet, Nicolas Ferre, Wei-Hai Fang,* and Roland Lindh* , Systematic Theoretical Investigation on the Light Emitter of Firefly, J. Chem. Theory Comput . 7, 798–803 (2011).
Wen-Zuo Li, Shu-Feng Chen, and Ya-Jun Liu*, Relativistic multireference calculation of photodissociation of o-, m-, and p-bromofluorobenzene, J. Chem. Phys. 134, 114303 (1-8) (2011)
Shu-Feng Chen, Ling Yue, Ya-Jun Liu* and Roland Lindh, Multireference theoretical studies on the solvent effect of firefly multicolor bioluminescence, Int. J. Quant. Chem . 111, 3371-3377 (2011)
Ya-Jun Liu,* Daniel Roca-Sanjuán and Roland Lindh, Computational Photochemistry and Photophysics: the state of the art, Photochemistry , 40, 42-72 (2012) (book chapter)
Ya-Jun Liu*, Computational photochemistry, Progress in Chemistry, 24, 950-956 (2012) (review)
Xue-Fen Gao, Cheng-Xing Cui, Ya-Jun Liu* , Trapping intermediates and comparing relative reactivities: a DFT M06-2X study on Diels–Alder cycloadditions of butadiene to C60 and C70, J. Phys. Org. Chem. 25, 850–855 (2012).
Ling Yue, Ya-Jun Liu* and Wei-Hai Fang* , Mechanistic Insight into the Chemiluminescent Decomposition of Firefly Dioxetanone, J. Am. Chem. Soc. 134, 11632–11639 (2012).
Shu-Feng Chen, Isabelle Navizet, Daniel Roca-Sanjuán, Roland Lindh, Ya-Jun Liu* , and Nicolas Ferré* , Chemiluminescence of coelenterazine and fluorescence of coelenteramide: a systematic theoretical study , J. Chem. Theory Comput . 8, 2796–2807 (2012).
Ling Yue, Daniel Roca-Sanjua?n, Roland Lindh, Nicolas Ferre and Ya-Jun Liu* , Can the Closed-Shell DFT Methods Describe the Thermolysis of 1,2-Dioxetanone? J. Chem. Theory Comput. 8 , 4359-4363 (2012)
Ling Yue and Ya-Jun Liu*, Mechanism of AMPPD Chemiluminescence in a Different Voice, J. Chem. Theory Comput. 9 , 2300-2312(2013)
Shu-Feng Chen, Nicolas Ferré and Ya-Jun Liu*, QM/MM Study on the Light Emitters of Aequorin Chemiluminescence, Bioluminescence, and Fluorescence: A General Understanding of the Bioluminescence of Several Marine Organisms, Chem. Eur. J. 19, 8466-8472 (2013)
Yuan-Yuan Cheng, Jia Zhu*, Ya-Jun Liu*, Theoretical tuning of the firefly bioluminescence spectra by the modification of oxyluciferin, Chem. Phys. Lett. 591, 156-160 (2014)
Ignacio Fdez Galván*, Hong-Yan Xiao, Isabelle Navizetc, Ya-Jun Liu*, and Roland Lindh, S0 → S3 transition in recombination products of photodissociated dihalomethanes, Mol . Phys . 112 , 575-582 (2014)..
Shufeng Chen, Isabelle Navizet, Roland Lindh, Yajun Liu* , and Nicolas Ferre*, Hybrid QM/MM Simulations of the Obelin Bioluminescence and Fluorescence Reveal an Unexpected Light Emitter. J. Phys. Chem. B 118, 2896-2903 (2014) .
Cong Hou, Ya-Jun Liu,* Nicolas Ferré, and Wei-Hai Fang*, Understanding bacterial bioluminescence: A theoretical study of the entire process, from reduced flavin to light emission, Chem. Eur. J. 20 , 7979-7986 (2014)
Cheng-Xing Cui, Ya-Jun Liu*, A thorough understanding of the Diels–Alder reaction of 1,3-butadiene and ethylene, J. Phys. Org. Chem. 27, 652–660 (2014).
Oleg V. Maltsev, Ling Yue, Mateusz Rebarz, Lukas Hintermann, Michel Sliwa, Cyril Ruckebusch, Ljupco Pejov*, Ya-Jun Liu* and Pance Naumov*, Vibrational Spectra of Chemical and Isotopic Variants of Oxyluciferin, the Light Emitter in the Firefly Bioluminescence , Chem. Eur. J. 20, 10782 – 10790 (2014)
Cheng-Xing Cui, Ya-Jun Liu*, A theoretical study of the mechanisms for 1,3-dipolar cycloadditions of diphenyldiazomethane to C60 and C70, J. Phys. Org. Chem. 27, 823–832 (2014).
Yanling Luo, Yajun Liu*, Role of Superoxide in Bioluminescence. Chem. J. Chinese U. 36, 24-33 (2015)
Bo-Wen Ding, Pance Naumov and Ya-Jun Liu*, Mechanistic Insight into Marine Bioluminescence: Photochemistry of the Chemiexcited Cypridina (Sea Firefly) Lumophore. J. Chem. Theory Comput. 11, 591-599 (2015)
Ling Yue, Zhenggang Lan* and Ya-Jun Liu*, The Theoretical Estimation of the Bioluminescent Efficiency of the Firefly via a Nonadiabatic Molecular Dynamics Simulation J. Phys. Chem. Lett. 6, 540-548 (2015)
Cheng-Xing Cui, Ya-Jun Liu*, Role of encapsulated metal cation in the reactivity and regioselectivity of the C60 Diels-Alder reaction,J. Phys. Chem. A. 19, 3098–3106 (2015).
Cheng-Xing Cui, Ya-Jun Liu*, A DFT study on Diels–Alder cycloadditions of trans-1,3-butadiene to C60 and C70,J. Phys. Org. Chem. 28, 281–289 (2015).
Yan-Li Song, Ya-Jun Liu*, Spin-orbit ab initio investigation on the photolysis of CH2BrI, Chem. J. Chinese U. 36, 2163-2170 (2015)
Yuan-Yuan Cheng, Ya-Jun Liu*, What Exactly Is the Light Emitter of a Firefly? J. Chem. Theory Comput . 11, 5360?5370 (2015)
Yan-Li Song, Cheng-Xing Cui, Ya-Jun Liu*, Theoretical study of the homolytic photolysis of hydrogen peroxide at the state-of-the-art level, J. Photoch. Photobio. A 317, 68–71 (2016)
Yuan-Yuan Cheng, Ya-Jun Liu *, Vibrationally Resolved Absorption and Fluorescence Spectra of Firefly Luciferin: A Theoretical Simulation in the Gas Phase and in Solution Photochem Photobio . 92, 552-560 (2016)
Yan-Ling Luo, Ya-Jun Liu*, Bioluminophore and FMN Fluorescence Quenching of Bacterial Bioluminescence - A Theoretical Study, Chem. Eur. J. 22, 16243–16249 (2016)
Ning Lou, Yanbang Li, Chengxing Cui, Yajun Liu*, and Liangbing Gan*, Preparation of Azafullerene C59NR5 and Fullerene Derivative C60NAr5 with a Pyridine Moiety on the Cage Skeleton, Org. Lett. 18, 2236?2239 (2016)
Bo-Wen Ding, Ya-Jun Liu*, Bioluminescence of Firefly Squid via Mechanism of Single Electron-Transfer Oxygenation and Charge-Transfer-Induced Luminescence, J. Am. Chem. Soc. 139, 1106?1119 (2017)
Daniel Roca-Sanjuán*, Antonio France′s-Monerris, Ignacio Fdez Galván, Pooria Farahani, Roland Lindh* and Ya-Jun Liu*, Advances in computational photochemistry and chemiluminescence of biological and nanotechnological molecules, Specialist Periodical Reports: Photochemistry, 44, 16-60 (2017) (Book chapter)
Cheng-Xing Cui*, Ya-Jun Liu*,Yu-Ping Zhang, Ling-Bo Qu, and Zhao-Pei Zhang, Theoretical Study on the Reactivity and Regioselectivity of the Diels?Alder Reaction of Fullerene: Effects of Charges and Encapsulated Lanthanum on the Bis-Functionalization of C70, J. Phys. Chem. A 121, 523–531 (2017)
Ming-Yu Wang, Ya-Jun Liu*, Theoretical Study of Dinoflagellate Bioluminescence, Photochem. Photobio. 93: 511–518 (2017)
Yuan-Yuan Cheng, Ya-Jun Liu*, Theoretical simulation of the vibrationally resolved UV absorption spectrum of acryloyl fluoride, Chin. J. Chem. 35, 733-741 (2017)
Mohan Yu, Yoshihiro Ohmiya*, Pan?e Naumov, Ya-Jun Liu*, Theoretical insight into the emission properties of the luciferin and oxyluciferin of Latia, Photochem. Photobio. 94, 540–544 (2018)
Yuan-Yuan Cheng, Ya-Jun Liu*, Theoretically Developing Near-infrared Bioluminescent Systems, Chem. Eur. J. 24, 9340–9352 (2018)
Ling Yue*, Ya-Jun Liu*, The Basic Theory and Critical Problems in the Trajectory Surface Hopping Simulations on the Chemiluminescent Reaction and Quantum Yields of Organic Peroxides, Chem. J. Chinese U. 39, 2113-2128 (2018)
Yan-Ling Luo, Ya-Jun Liu*, Revisiting the Origination of Bacterial Bioluminescence: a QM/MM Study on Oxygenation Reaction of Reduced Flavin in Protein, ChemPhyschem 20,405-409(2019)
Ling Yue*, Ya-Jun Liu*, Two Conical Intersections Control the Luminol Chemiluminescence, J. Chem. Theory Comput. 15, 1798?1805 (2019)
Meng Gao, Ya-Jun Liu*, Photoluminescence Rainbow from Coelenteramide - A Theoretical Study, Photochem. Photobio. 95, 563–571 (2019)
Yan-Ling Luo, Ya-Jun Liu*, Theoretical Insight into a Nonadiabatic Proton-Coupled Electron Transfer Mechanism of Reduced Flavin Oxygenation, J. Phys. Chem. A 123,4354-4359(2019)
Yuan-Yuan Cheng, Ya-Jun Liu*, Luciferin Regeneration in Firefly Bioluminescence via Proton-Transfer-Facilitated Hydrolysis, Condensation and Chiral Inversion, ChemPhyschem 20, 1719- 1727 (2019)
Y an-Ling Luo, Ya-Jun Liu * , Theoretical Insight into a Nonadiabatic Proton-Coupled Electron Transfer Mechanism of Reduced Flavin Oxygenation, J. Phys. Chem. A 123 , 4354-4359(2019)
Meng Gao , Ya-Jun Liu * , Tuning the Fluorescence of Calcium-discharged Photoprotein Obelin via Mutating at the His22-Phe88-Trp92 Triad – a QM/MM Study, Photochem. Photobio. Sci. 18, 1823–1832 (201 9)
Yi-Qi Tang, Ya-Jun Liu * , Chemistry Theoretical Study on Bioluminescent Mechanism and Process of Siberian Luminous Earthworm Fridericia heliota, J. Photoch. Photobio. A 380, 111870 (1-7) (2019)
Ming -Yu Wang, Ya-Jun Liu * , Mechanistic insight into initiation of dinoflagellate bioluminescence, J. Photoch. Photobio. A 394, 112488 (1-7) (2020)
Mohan Yu, Ya -J un Liu * , Same luciferin in different luciferases emitting different-color light - a theoretical study on beetle bioluminescence , J. Chem. Theory Comput . 16, 3904-3909 (2020)
Yue Ling, Le Yu, Chao Xu, Chaoyuan Zhu * and Yajun Liu * , Quantum yields of singlet and triplet chemiexcitation of dimethyl 1,2-Dioxetane: Ab initio nonadiabatic molecular dynamics simulation, Phys. Chem. Chem. Phys . 22, 11440-11451 (2020)
Yi-Qi Tang, Ya-Jun Liu * , Mechanistic Study on Chemiluminescence of H 2 O 2 -dependent Tet-rachloro-1,4-Benzoquinone, J. Org. Chem. 85, 9042–9050 (2020)
Bo-Wen Ding, Elena V. Eremeeva, Eugene S. Vysotski * , Ya-Jun Liu * , Luminescence Activity Decreases When v-Coelenterazine Replaces Coelenterazine in Calcium-regulated Photoprotein – A Theoretical and Experimental Study , Photochem. Photobio . 96, 1047–1060 (2020) (featured article and cover article)
Mo han Yu, Yuanyuan Cheng, Yajun Liu * , Mechanistic Study of Oxygenation Reaction in Firefly Bioluminescence, Acta Chim. Sinica . 78, 989-993 (2020)
Yi-Qi Tang, Ya-Jun Liu*, Computational Bioluminescence, Chin. J. Chem. 39, 43–49 (2021)
Ming-Yu Wang, Ya-Jun Liu*, Chemistry in Fungal Bioluminescence: A Theoretical Study of from Luciferin to Light Emission, J. Org. Chem. 86, 1874?1881 (2021)
Shuangqi Pi, Quansong Li, Ling Yue*, Ya-Jun Liu*, Mechanistic Investigation on Chemiluminescent Formaldehyde Probes, Chem. Eur. J. 27, 5712-5720 (2021)
Yi-Qi Tang, Li Mao, Ben-Zhan Zhu*, Ya-Jun Liu*, Mechanistic Study on Chemiluminescence of Chloranilic Acid by Co(II)-mediated Fenton-like System, J. Org. Chem. 86, 4472?4482 (2021)
Mohan Yu, Yajun Liu * , A QM/MM study on the initiation reaction of firefly bioluminescence - enzymatic oxidation of luciferin, Molecules 2021, 26, 4222 (1-7)
Yi-Qi Tang, Yanling Luo, and Ya-Jun Liu * , Theoretical Study on Role of Aliphatic Aldehyde in Bacterial Bioluminescence, J. Photoch. Photobio. A 419, 113446 (1-7) (2021)
Shu-Feng Chen, Eugene S. Vysotski * , Ya-Jun Liu * , H 2 O-Bridged Proton-Transfer Channel in Emitter Species Formation in Obelin Bioluminescence, J. Phys. Chem. B 125, 10452-10458 (2021)
Ling Yue * and Ya-Jun Liu * , Three S0/S1 Conical Intersections Control Electron-TransferCatalyzed Chemiluminescence of 1,2-Dioxetanedione, J. Chem. Theory Comput . 17, 3483?3494 (2021)
Ya-Jie Guo, Cheng-Xing Cui, Ya-Jun Liu * , Theoretical Study on Storage and Release of Firefly Luciferin, Photochem. Photobio. 98 , 184–192 (2022)
Ya-Jie Guo, Ya-Jun Liu * , QM/MM Study on Enzymatic Mechanism in Sinigrin Biosynthesis, Chin. J. Chem. Phys. 35 , 193–198 (2022)
Zhuo Quan, Li Mao, Yi-Qi Tang, Ming Lei, Ben-Zhan Zhu, and Ya-Jun Liu * , Mechanistic Investigation of H2O2-dependent Chemiluminescence from Tetrabromo-1,4-Benzoquinone, ChemPhyschem 23, e2021008857 (2022)
Ya-Jun Liu*, Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review, J. Photoch. Photobio. C 52, 100537 (1-25) (2022)