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1. Yamazaki, H., H. Honma, T. Nagai, M. Doubell, K. Amakasu and M. Kumagai 2010: Multilayer biological structure and mixing in the upper water column of Lake Biwa during summer 2008, Limnol. 11(l), doi:10,1007/S10201-009-0288-2,63-70.*
2. deYoung, B., F. Werner, H. Batchelder, F. Carlotti, Ø. Fiksen, E. Hofmann, S. Kim and H. Yamazaki 2010: Physical-biological interactions: integration and modeling. In Marine Ecosystems and Climate Change, (eds) M.Barange, J.Field, R.Harris, E.Hofmann, R.Perry, and F.Werner, Oxford University Press, 89-128.
3. Arima, M., H. Nakamura and H. Yamazaki 2010: “Development of the Glider-type Turbulence Ocean microstructures Acquisition Profiler, TurboMAP-G”, Procs. of the twentieth, International Offshore and Polar Engineering Conference (ISOPE-2010), CD-ROM, (2010.06).
4. Prairie J.C., P.J.S. Franks, J.S. Jaffe, M.J. Doubell and H.Yamazaki 2011: Physical and biological controls of vertical gradients in phytoplankton. Limnology and Oceanography: Fluids and Enviroments, 1, 75-90, doi 10.1215/21573698-1267403.
5. Nagai, T., A. Tandon, H. Yamazaki, M. Doubell and S. Gallager 2012: Direct observations of microscale turbulence and thermohaline structure in the Kuroshio front. J. Geophys. Res., 117, C08013, DOI: 10.1029/2011JC007228.
6. Yamazaki, H. and T. Nagai 2012: Turbulence and mixing、In: Global warming and limnology (Eds.) T. Nagata, M. Kumagai & H. Yoshiyama, Kyoto University Press. 74-87, (in Japanese).
7. Auger, G., H.Yamazaki, T.Nagai, C.Jiao and M.Kumagai 2013:Hypolimnetic turbulence generation associated with superposition of large-scale internal waves in a strongly stratified lake: Lake Biwa, Japan, Limnology, 14: 229-238 DOI 10.1007/s10201-013-0401-4.*
8. Kokubu, Y., H. Yamazaki, T. Nagai and E. Gross 2013: Mixing observations at a constricted channel of a semi-closed estuary: Tokyo bay, Continental Shelf Research, http://dx.doi.org/10.1016/jsr.2013.09.004.*
9. Masunaga, E. and H.Yamazaki 2014: A new tow-yo instrument to observe high-resolution coastal phenomena. J. Mar. Sys., 129, 425-436, http://dx.doi.org/10.1016/j.jmarsys.2013.09.005*
10. Raine, R., E. Berdalet, M. McManus and H.Yamazaki 2014: Preface Harmful algal blooms in stratified systems, Deep-Sea Res. II, 101, 1-3, http://dx.doi.org/10.1016/j.dsr2.2014.01.005
11. Berdalet, E., M.A. McManus, O.N. Ross, H. Burchard, F.P. Chavez, J.S. Jaffe, I.R. Jenkinson, R. Kudela, I. Lips, U. Lips, A. Lucas, D. Rivas, M.C. Ruiz-de la Torre, J. Ryan, J.M. Sullivan and H. Yamazaki 2014: Understanding harmful algae in stratified systems: Review of progress and future directions, Deep-Sea Res. II, 101, 4-20, http://dx.doi.org/10.1016/j.dsr2.2013.09.042
12. Doubell,M., J.C. Prairie and H.Yamazaki 2014: Millimeter scale profiles of chlorophyll fluorescence: Deciphering the microscale spatial structure of phytoplankton, Deep-Sea Res. II, 101, 207-215, http://dx.doi..org/10.1016/j.dsr2.2012.12.009.*
13. Yamazaki, H., C. Locke, L. Umlauf, H. Burchard, T. Ishimaru and D. Kamykowski 2014: A Lagrangian model for phototaxis-induced thin layer formation, Deep-Sea Res. II, 101, 193-206, http://dx.doi.org/10.1016/j.dsr2.2012.12.010.*
14. Mandal, S., C. Locke, M. Tanaka and H.Yamazaki 2014: Observations and models of highly intermittent phytoplankton distributions, Plos One, DOI: 10.1371/journal.pone.0094797*
15. Foloni-Neto, H., R. Lueck, Y. Mabuchi, H. Nakamura, M. Arima and H. Yamazaki 2014: A new quasi-horizontal glider to measure biophysical microstructure, J. Atmospheric and Oceanic Technology, 31(10), 2278-2293*
16. Masunaga, E., O. Flinger and H. Yamazaki 2015: An observational and numerical study of river plume dynamics in Otsuchi Bay, Japan, J. Oceanogr., doi: 10.1007/s10872-015-0324-2.*
17. Foloni-Neto, H., M. Tanaka, H. Joshima and H.Yamazaki 2015: A comparison between quasi-horizontal and vertical observations of phytoplankton microstructure, J. Plankton Res., doi: 10.1093/plankt/fbv075*
18. Masunaga, E., H. Honmma, H.Yamazaki, O. Fringer, T. Nagai, Y.Kitade and A.Okayasu 2015: Mixing and sediment resuspension associated with internal bores in a shallow bay, Continental Shelf Research, 110, 85-99. doi:10.1016/j.csr.2015.09.022
19. Masunaga, E., O.B. Fringer, H.Yamazaki and A. Amakasu 2016: Strong turbulent mixing induced by internal bores interacting with internal tide-driven vertically sheared flow, Geophys. Res. Lett., 43, 2094-2101, doi:10.1002/2016GL067812*
20. Yamazaki, H. and L. Smith 2016: Introduction to the themed section: advances in plankton modelling and biodiversity evaluation, J. Plankton Res., 38, 944-945.
21. Mandal, S., H.Homma, A. Priyadarshi, H. Burchard, S.L. Smith, K.W. Wiritz and H. Yamazaki 2016: A 1D physical-biological model of the impact of highly intermittent phytoplankton distributeons, J. Plankton Res., doi: 10.1093/plankt/fbw019.*
22. Yamazaki, H., E. Masunaga, H. Foloni-Neto and S. Gallager 2016: Development of monitoring technologies to observe plankton ecosystem in coastal oceans, Bull. Coastal Oceanogr., 53(2) 159-163. (in Japanese with English abstract).*
23. Homma, H., T.Nagai, K. Shimizu and H. Yamazaki 2016: Early-winter mixing event associated with baroclinic motions in weakly stratified Lake Biwa. Inland Water, 6, 364-378. doi: 10.5268/IW-6.3.898.*
24. Uchiyama, Y., Y. Suzue and H. Yamazaki 2016: Biogeochemical responses to mesoscale oceanic variability in the Kuroshio region analyzed with a ROMS-NPZD model, J-Stage, 72, 3, I_1369-1374, doi:10.2208/kaigan.72.I_136. (in Japanese with English abstract).
25. Priyadarshi, A., S. Mandal, L. Smith and H.Yamazaki 2017: Micro-scale variability enhances trophic transfer and potentially sustains biodiversity in plankton ecosystems, J. Theoretical Biology, 412, 86-93.*
26. Berdalet, E., M. Montresor, B. Reguera, S. Roy, H. Yamazaki, A. Cembella, and R. Raine 2017: Harmful algal blooms in fjords, coastal embayments, and stratified systems: Recent progress and future research. Oceanography 30(1):46–57, https://doi.org/10.5670/oceanog.2017.109.
27. Masunaga, E., R. Arthur, O. Fringer and H.Yamazaki 2017: Sediment resuspension and the generation of intermediate nepheloid layers by shoaling internal bores, J. Mar. Sys., 170, 31-41.
28. Tanaka, M., T. Nagai, T. Okada and H. Yamazaki 2017: Measurement of sardine-generated turbulence in a large tank. Mar. Ecol. Prog. Ser., 571, 207-220. doi: 10.3354/meps12098.*
29. Uchiyama, Y., Y. Suzue and H. Yamazaki 2017: Eddy-driven nutrient transport and associated upper-ocean primary production along the Kuroshio. J. Geophys. Res. doi: 10.1002/2017JC012847.
30. Masunaga, E., O. Fringer, Y. Kitade, H. Yamazaki and S. Gallager 2017: Dynamics and energetics of trapped diurnal internal Kelvin waves around a mid-latitude island. J. Phys. Oceanogr., 47, 2479-2498. DOI: 10.1175/JPO-D-16-0167.1*
31. Uchiyama, Y., R. Kanki, A. Takano, H. Yamazaki and Y. Miyazawa 2017: Mesoscale reproducibility in regional ocean modeling with a 3-D stratification estimate based on AVISO-Argo data. Atmosphere-Ocean. DOI:10.1080/07055900.2017.1399858.
32. Masunaga, E., Y. Suzue, Y. Uchiyama and H. Yamazaki 2017: A study of flow field influenced by internal tides and the Kuroshio around the Izu-chain islands, J-stage, 73, 2, I_451-456, https://doi.org/10.2208/kaigan.73.I_451. (in Japanese with English abstract).
33. Suzue, Y., Y. Uchiyama and H. Yamazaki 2017: Biogeochemical responses to seasonal oceanic variability around the Kuroshio analyzed using a ROMS-NPZD model, J-stage, 73, 2, I_457-462,https://doi.org/10.2208/kaigan.73.I_457. (in Japanese with English abstract).
34. Sasmal, K., E. Masunaga, A. Webb, O. Fringer, E. Gross, M. Rayson and H. Yamazaki 2018: A three-dimensional numerical study of river plume mixing processes in Otsuchi Bay, Japan.J. Oceanogr., 74, 169-186. doi: 10.1007/s10872-017-0446-9.*
35. Masunaga, E., Y. Uchiyama, Y. Suzue and H. Yamazaki 2018: Dynamics of internal tides over a shallow ridge investigated with a high-resolution downscale regional ocean model, Geophysical Research Letters, 45,https://doi.org/10.1002/2017GL076916 .
36. Boss, E., A, Waite, F. Muller-Karger, H. Yamazaki, R. Wanninkhof, J. Uitz, S. Thomalla, H. Sosik, B. Sloyan, A. Richardson, P. Miloslavich, J. Karstensen, G. Grégori, K. Fennel, H. Claustre, M. Cornejo, I. Berman-Frank, S. Batten, and S. Acinas 2018: Beyond chlorophyll fluorescence: the time is right to expand biological measurements in ocean observing programs. Limnology and Oceanography Bulletin, Article ID: LOB10243, http://dx.doi.org/10.1002/lob.10243.
37. Raine, R., E. Berdalet, H. Yamazaki, I. Jenkinson and B. Reguera 2018: Key questions and recent research advances on harmful algal blooms in stratified systems, Chapter 9, In Global Ecology and Oceanography of Harmful Algal Blooms, Ecological Studies 232, (eds.) P.M. Glibert et al. https://doi.org/10.1007/978-3-319-70069-4_9 165-186.
38. Smith, S.L., S. Mandal, A. Priyadarshi, B. Chen and H. Yamazaki 2019: Modeling the combined effects of physiological flexibility and micro-scale variability for plankton ecosystem dynamics, Encyclopedia of Ocean Sciences, Third Edition, (eds) H.K. Cochran, H.J. Bokuniewicz and P.L. Yager, Elsevier, Vol.5, 527-535. https://doi.org/10.1016/B978-0-12-409548-9.10955-8
39. Nagai, T., G. Augur, H. Burchard, K. Denman and H. Yamazaki 2019: One-dimensional mixed layer models, Encyclopedia of Ocean Sciences, Third Edition, (eds) H.K. Cochran, H.J. Bokuniewicz and P.L. Yager, Elsevier, vol. 5, 561-570. https://doi.org/10.1016/B978-0-12-409548-9.11623-9.
40. Yamazaki, H., W. Aoyama, E. Masunaga and M. Tanaka 2019: Observation of three-dimensional flow around fish cages using a towed ADCP and free-fall multi-parameter profiler. Aquaculture Research, 50, 1107-1116 DOI: 10.1111/are.13985.
41. Locke, C., L. Seuront and H. Yamazaki, 2019: A correction and discussion on Log-Normal intermittency B-model. Fluid, doi:10.3390/fluidsxx010005.
42. Mandal, S., S. Lan Smith, A. Priyadarshi and H. Yamazaki, 2019: Micro-scale variability impacts the outcome of competition between different modelled size classes of phytoplankton. Frontiers in Marine Science, 6:259, doi: 10.3389/fmars.2019.00259*.
43. Takeuchi, M., M.J. Doubell, G. Jackson, M. Yukawa, Y. Sagara and H. Yamazaki, 2019: Turbulence mediates marine aggregate formation and destruction in the upper ocean. Scientific Report 9, 16280 https://doi.org/10.1038/s41598-019-52470-5*.
44. Priyadarshi, A., S. Lan Smith, S. Mandal, M. Tanaka and H.Yamazaki, 2019: Micro-scale patchiness enhances trophic transfer efficiency and potential plankton biodiversity. Scientific Report, 9:17243 | https://doi.org/10.1038/s41598-019-53592-6*.
45. Masunaga, E., Y. Uchiyama and H.Yamazaki, 2019: Strong internal tides generated by the interaction of the Kuroshio Current and tides over shallow ridge. J. Physical Oceanography, 49, 2917-2934, DOI: 10.1175/JPO-D-18-0238.1.
46. Tanaka, M., A. Genin, R.M. Lopes, J.R. Stricker and H.Yamazaki, 2019 Biased measurements by stationary turbidity-fluorescence instruments due to phototactic zooplankton behavior. Limnology and Oceanography: Method, 17, 505-513, doi: 10.1002/lom3.10328*.
47. Masunaga, E., R.S. Arthur and H.Yamazaki, 2020: Baroclinic residual circulation and mass transport due to internal tides. J. Geophysical Research: Ocean, 125, e2019JC015316. doi.org/10.1029/2019JC015316.
48. Tanaka, M., A. Genin, Y. Endo, G.N. Ivey and H.Yamazaki, 2020: Modulation of demersal zooplankton migration by turbulence: evidence from the North Pacific and the Red Sea. Limnology and Oceanography, DOI: 10.1002/lno.11646 (in press)*
49. Chen, B., E. Masunaga, S.L. Smith and H.Yamazaki, 2020: Effect of diel migration on zooplankton dispersion and patchiness. J. Oceanogr., doi.org/10.1007/s10872-020-00564-4.
*: HY is the corresponding author