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（1）Junshi Shen#, Zhipeng Li#, Zhongtang Yu, and Weiyun Zhu*. Effects of dietary replacement of soybean meal with dried distillers grains with solubles on the microbiota occupying different ecological niches in the rumen of growing Hu lambs. Journal of Animal Science and Biotechnology, 2020, 11:93, doi:10.1186/s40104-020-00499-2
（2）Zhipeng Li#, Junshi Shen#, Yixuan Xu, and Weiyun Zhu*. Metagenomic analysis reveals significant differences in microbiome and metabolic profiles in the rumen of sheep fed low N diet with increased urea supplementation. FEMS Microbiology Ecology, 2020, 96, fiaa117. doi:10.1093/femsec/fiaa117
（3）Zhipeng Li, Chunlong Mu, Yixuan Xu, Junshi Shen*, and Weiyun Zhu. Changes in the solid-, liquid-, and epithelium-associated bacterial communities in the rumen of Hu lambs in response to dietary urea supplementation. Frontiers in Microbiology, 2020, 11:244. doi:10.3389/fmicb.2020.00244
（4）Yixuan Xu, Zhipeng Li, Luis Eduardo Moraes, Junshi Shen*, Zhongtang Yu, and Weiyun Zhu. Effects of incremental urea supplementation on rumen fermentation, nutrient digestion, plasma metabolites, and growth performance in fattening lambs. Animals, 2019, 9: 652; doi:10.3390/ani9090652.
（5）Junshi Shen, Yaying Chen, Luis Eduardo Moraes, Zhongtang Yu, and Weiyun Zhu*. Effects of dietary protein sources and nisin on rumen fermentation, nutrient digestion, plasma metabolites, nitrogen utilization, and growth performance in growing lambs. Journal of Animal Science, 2018, 96:1929-1938.
（6）Junshi Shen, Zhongtang Yu, and Weiyun Zhu*. Insights into the populations of proteolytic and amino acid-fermenting bacteria from microbiota analysis using in vitro enrichment cultures. Current Microbiology, 2018, 75:1543-1550.
（7）Junshi Shen, Zhuang Liu, Zhongtang Yu*, and Weiyun Zhu*. Monensin and nisin affect rumen fermentation and microbiota differently in vitro. Frontiers in Microbiology, 2017, 8:1111. doi:10.3389/fmicb.2017.01111
（8）Junshi Shen, Lijiang Song, Huizeng Sun, Bing Wang, Zhi Chai, Barhram Chacher, Jianxin Liu*. Effects of corn and soybean meal types on rumen fermentation, nitrogen metabolism and productivity in dairy cows, Asian-Australasian Journal of Animal Science, 2015, 28:351-359.
（9）Shanshan Li#, Junshi Shen#, Daxi Ren, and Jianxin Liu*. Effect of the processing methods of corn grain and soybean meal on milk protein expression profiles in dairy cows. Animal, 2015, 9:267-274.
（10）Junshi Shen, Zhi Chai, Lijiang Song, Jianxin Liu*, Yueming Wu. Insertion depth of oral stomach tubes may affect the fermentation parameters of ruminal fluid collected in dairy cows, Journal of Dairy Science, 2012, 95:5978-5984.
（11）Junshi Shen, Jiaqi Wang*, Hongyang Wei, Dengpan Bu, Peng Sun, Lingyun Zhou. Transfer efficiency of melamine from feed to milk in lactating dairy cows fed with different doses of melamine. Journal of Dairy Science, 2010, 93:2060-2066.
（12）Yaying Chen, Junshi Shen*, Zhuang Liu, Peng’an Lv, and Weiyun Zhu. Effects of bacitracin and bacitracin zinc on in vitro fermentation, methane production and microbial populations of the rumen. Animal Nutrition and Feed Technology, 2017, 17:303-314.
（13）孙美杰, 徐诣轩, 曹玉荣, 杜风光, 申军士*, 朱伟云. 不同尿素添加剂量对蒸汽爆破玉米秸秆体外瘤胃发酵和功能微生物数量的影响. 动物营养学报, 2021, https://kns.cnki.net/kcms/detail/11.5461.S.20210419.1022.020.html
（14）徐诣轩, 李志鹏, 申军士*, 朱伟云. 微生物介导反刍动物瘤胃氨生成及其对瘤胃功能的影响. 微生物学报, 2019, 59:781-788.
（15）陈亚迎, 刘壮, 吕朋安, 申军士*, 朱伟云. 溶菌酶对瘤胃体外发酵、甲烷生成及微生物菌群结构的影响. 微生物学报, 2017, 57: 758-768.
（16）申军士, 刘壮, 陈亚迎, 吕朋安, 朱伟云*. 乳酸链球菌素对瘤胃体外发酵、甲烷生成及功能菌群数量的影响. 微生物学报, 2016, 56:1348-1357.
（17）申军士, 毛胜勇, 朱伟云*. 反刍动物瘤胃高效产氨菌菌群结构、功能及其调控. 动物营养学报, 2015, 2327: 2323-2327.
（18）申军士, 宋立江, 柴智, 刘建新*, 李树聪. 瘤胃穿刺技术及其在奶牛亚急性瘤胃酸中毒诊断中的应用. 中国畜牧杂志, 2013,49:65-68
（19）申军士, 王加启*, 卜登攀, 魏宏阳, 兰欣怡. 乳中碱性磷酸酶活性测定方法研究进展. 中国乳品工业, 2009, 37:31-34
（20）申军士, 王加启*, 王晶, 魏宏阳, 卜登攀, 国卫杰. DDGS的营养特性及其在奶牛日粮中的应用. 中国饲料, 2008, 365:37-40
著作
（1）申军士（参编），世界奶业发展报告，2014，中国农业大学出版社.
（2）申军士（参译），奶中的生物活性成分及其在人类营养中的作用，2020，中国农业科学技术出版社.
其他文章
（1）Peng Sun, Jiaqi Wang*, Junshi Shen, and Hongyang Wei. Pathway for the elimination of melamine in lactating dairy cows. Journal of Dairy Science, 2012, 95:266-271.
（2）Peng Sun, Jiaqi Wang*, Junshi Shen, and Hongyang Wei. Residues of melamine and cyanuric acid in milk and tissues of dairy cows fed different doses of melamine. Journal of Dairy Science, 2011, 94:3575-3682.
（3）Xinyi Lan, Jiaqi Wang*, Dengpan Bu, Junshi Shen, Nan Zheng, and Peng Sun. Effects of heating temperatures and addition of reconstituted milk on the heat indicators in milk. Journal of Food Science, 2010, 75:C653-C658.
（4）刘壮, 申军士, 朱伟云*. 大肠菌群与氮营养素互作及其对机体健康的影响. 微生物学报. 2017, 57: 8-14.
（5）王炳, 申军士, 叶均安, 刘建新*. 奶牛日粮中物理有效中性洗涤纤维作用的研究进展. 中国畜牧杂志, 2013, 19:91-96.
（6）姜雅慧, 沈维军, 卜登攀, 杨红建*, 申军士. 持续动态瘤胃模拟系统研制现状与应用展望. 中国畜牧兽医, 2011, 2:212-217.
（7）王晶, 王加启*, 卜登攀, 国卫杰, 申军士, 魏宏阳, 周凌云, 刘开朗. DDGS的营养价值及在动物生产中的应用研究进展. 中国畜牧杂志, 2009, 45:71-75.
（8）王晶, 王加启*, 卜登攀, 国卫杰, 申军士, 魏宏阳, 周凌云, 刘开朗. 近红外光谱技术在牛奶及其制品品质检测中的应用. 光谱学与光谱分析, 2007, 6:38-41.
（9）梅原, 薛洋, 于昊, 姜志洋, 申军士, 茆达干*. 低蛋白质日粮中添加非蛋白氮对湖羊睾丸发育的影响. 畜牧与兽医, 2020, 52:21-26.
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